Merge branch 'master' into aniso

1 files changed, 1 insertions, 366 deletions

diff --git a/src/PluginAlgorithm.cpp b/src/PluginAlgorithm.cpp
index 9fc511a..1bcfbdb 100644
--- a/src/PluginAlgorithm.cpp
+++ b/src/PluginAlgorithm.cpp
@@ -26,376 +26,11 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
 $Id$
 */
 
-#ifdef ASTRA_PYTHON
-
 #include "astra/PluginAlgorithm.h"
-#include "astra/Logging.h"
-#include "astra/Utilities.h"
-#include <boost/algorithm/string.hpp>
-#include <boost/algorithm/string/split.hpp>
-#include <iostream>
-#include <fstream>
-#include <string>
-
-#include <Python.h>
-#include "bytesobject.h"
 
 namespace astra {
 
+CPluginAlgorithmFactory *CPluginAlgorithmFactory::m_factory = 0;
 
-
-void logPythonError(){
-    if(PyErr_Occurred()){
-        PyObject *ptype, *pvalue, *ptraceback;
-        PyErr_Fetch(&ptype, &pvalue, &ptraceback);
-        PyErr_NormalizeException(&ptype, &pvalue, &ptraceback);
-        PyObject *traceback = PyImport_ImportModule("traceback");
-        if(traceback!=NULL){
-            PyObject *exc;
-            if(ptraceback==NULL){
-                exc = PyObject_CallMethod(traceback,"format_exception_only","OO",ptype, pvalue);
-            }else{
-                exc = PyObject_CallMethod(traceback,"format_exception","OOO",ptype, pvalue, ptraceback);
-            }
-            if(exc!=NULL){
-                PyObject *six = PyImport_ImportModule("six");
-                if(six!=NULL){
-                    PyObject *iter = PyObject_GetIter(exc);
-                    if(iter!=NULL){
-                        PyObject *line;
-                        std::string errStr = "";
-                        while(line = PyIter_Next(iter)){
-                            PyObject *retb = PyObject_CallMethod(six,"b","O",line);
-                            if(retb!=NULL){
-                                errStr += std::string(PyBytes_AsString(retb));
-                                Py_DECREF(retb);
-                            }
-                            Py_DECREF(line);
-                        }
-                        ASTRA_ERROR("%s",errStr.c_str());
-                        Py_DECREF(iter);
-                    }
-                    Py_DECREF(six);
-                }
-                Py_DECREF(exc);
-            }
-            Py_DECREF(traceback);
-        }
-        if(ptype!=NULL) Py_DECREF(ptype);
-        if(pvalue!=NULL) Py_DECREF(pvalue);
-        if(ptraceback!=NULL) Py_DECREF(ptraceback);
-    }
-}
-
-
-CPluginAlgorithm::CPluginAlgorithm(PyObject* pyclass){
-    instance = PyObject_CallObject(pyclass, NULL);
-    if(instance==NULL) logPythonError();
-}
-
-CPluginAlgorithm::~CPluginAlgorithm(){
-    if(instance!=NULL){
-        Py_DECREF(instance);
-        instance = NULL;
-    }
-}
-
-bool CPluginAlgorithm::initialize(const Config& _cfg){
-    if(instance==NULL) return false;
-    PyObject *cfgDict = XMLNode2dict(_cfg.self);
-    PyObject *retVal = PyObject_CallMethod(instance, "astra_init", "O",cfgDict);
-    Py_DECREF(cfgDict);
-    if(retVal==NULL){
-        logPythonError();
-        return false;
-    }
-    m_bIsInitialized = true;
-    Py_DECREF(retVal);
-    return m_bIsInitialized;
-}
-
-void CPluginAlgorithm::run(int _iNrIterations){
-    if(instance==NULL) return;
-    PyGILState_STATE state = PyGILState_Ensure();
-    PyObject *retVal = PyObject_CallMethod(instance, "run", "i",_iNrIterations);
-    if(retVal==NULL){
-        logPythonError();
-    }else{
-        Py_DECREF(retVal);
-    }
-    PyGILState_Release(state);
 }
 
-void fixLapackLoading(){
-    // When running in Matlab, we need to force numpy
-    // to use its internal lapack library instead of
-    // Matlab's MKL library to avoid errors. To do this,
-    // we set Python's dlopen flags to RTLD_NOW|RTLD_DEEPBIND
-    // and import 'numpy.linalg.lapack_lite' here. We reset
-    // Python's dlopen flags afterwards.
-    PyObject *sys = PyImport_ImportModule("sys");
-    if(sys!=NULL){
-        PyObject *curFlags = PyObject_CallMethod(sys,"getdlopenflags",NULL);
-        if(curFlags!=NULL){
-            PyObject *retVal = PyObject_CallMethod(sys, "setdlopenflags", "i",10);
-            if(retVal!=NULL){
-                PyObject *lapack = PyImport_ImportModule("numpy.linalg.lapack_lite");
-                if(lapack!=NULL){
-                    Py_DECREF(lapack);
-                }
-                PyObject_CallMethod(sys, "setdlopenflags", "O",curFlags);
-                Py_DECREF(retVal);
-            }
-            Py_DECREF(curFlags);
-        }
-        Py_DECREF(sys);
-    }
-}
-
-CPluginAlgorithmFactory::CPluginAlgorithmFactory(){
-    if(!Py_IsInitialized()){
-        Py_Initialize();
-        PyEval_InitThreads();
-    }
-#ifndef _MSC_VER
-    if(astra::running_in_matlab) fixLapackLoading();
-#endif
-    pluginDict = PyDict_New();
-    inspect = PyImport_ImportModule("inspect");
-    six = PyImport_ImportModule("six");
-}
-
-CPluginAlgorithmFactory::~CPluginAlgorithmFactory(){
-    if(pluginDict!=NULL){
-        Py_DECREF(pluginDict);
-    }
-    if(inspect!=NULL) Py_DECREF(inspect);
-    if(six!=NULL) Py_DECREF(six);
-}
-
-PyObject * getClassFromString(std::string str){
-    std::vector<std::string> items;
-    boost::split(items, str, boost::is_any_of("."));
-    PyObject *pyclass = PyImport_ImportModule(items[0].c_str());
-    if(pyclass==NULL){
-        logPythonError();
-        return NULL;
-    }
-    PyObject *submod = pyclass;
-    for(unsigned int i=1;i<items.size();i++){
-        submod = PyObject_GetAttrString(submod,items[i].c_str());
-        Py_DECREF(pyclass);
-        pyclass = submod;
-        if(pyclass==NULL){
-            logPythonError();
-            return NULL;
-        }
-    }
-    return pyclass;
-}
-
-bool CPluginAlgorithmFactory::registerPlugin(std::string name, std::string className){
-    PyObject *str = PyBytes_FromString(className.c_str());
-    PyDict_SetItemString(pluginDict, name.c_str(), str);
-    Py_DECREF(str);
-    return true;
-}
-
-bool CPluginAlgorithmFactory::registerPlugin(std::string className){
-    PyObject *pyclass = getClassFromString(className);
-    if(pyclass==NULL) return false;
-    bool ret = registerPluginClass(pyclass);
-    Py_DECREF(pyclass);
-    return ret;
-}
-
-bool CPluginAlgorithmFactory::registerPluginClass(std::string name, PyObject * className){
-    PyDict_SetItemString(pluginDict, name.c_str(), className);
-    return true;
-}
-
-bool CPluginAlgorithmFactory::registerPluginClass(PyObject * className){
-    PyObject *astra_name = PyObject_GetAttrString(className,"astra_name");
-    if(astra_name==NULL){
-        logPythonError();
-        return false;
-    }
-    PyObject *retb = PyObject_CallMethod(six,"b","O",astra_name);
-    if(retb!=NULL){
-        PyDict_SetItemString(pluginDict,PyBytes_AsString(retb),className);
-        Py_DECREF(retb);
-    }else{
-        logPythonError();
-    }
-    Py_DECREF(astra_name);
-    return true;
-}
-
-CPluginAlgorithm * CPluginAlgorithmFactory::getPlugin(std::string name){
-    PyObject *className = PyDict_GetItemString(pluginDict, name.c_str());
-    if(className==NULL) return NULL;
-    CPluginAlgorithm *alg = NULL;
-    if(PyBytes_Check(className)){
-        std::string str = std::string(PyBytes_AsString(className));
-    	PyObject *pyclass = getClassFromString(str);
-        if(pyclass!=NULL){
-            alg = new CPluginAlgorithm(pyclass);
-            Py_DECREF(pyclass);
-        }
-    }else{
-        alg = new CPluginAlgorithm(className);
-    }
-    return alg;
-}
-
-PyObject * CPluginAlgorithmFactory::getRegistered(){
-    Py_INCREF(pluginDict);
-    return pluginDict;
-}
-
-std::map<std::string, std::string> CPluginAlgorithmFactory::getRegisteredMap(){
-    std::map<std::string, std::string> ret;
-    PyObject *key, *value;
-    Py_ssize_t pos = 0;
-    while (PyDict_Next(pluginDict, &pos, &key, &value)) {
-        PyObject *keystr = PyObject_Str(key);
-        if(keystr!=NULL){
-            PyObject *valstr = PyObject_Str(value);
-            if(valstr!=NULL){
-                PyObject * keyb = PyObject_CallMethod(six,"b","O",keystr);
-                if(keyb!=NULL){
-                    PyObject * valb = PyObject_CallMethod(six,"b","O",valstr);
-                    if(valb!=NULL){
-                        ret[PyBytes_AsString(keyb)] = PyBytes_AsString(valb);
-                        Py_DECREF(valb);
-                    }
-                    Py_DECREF(keyb);
-                }
-                Py_DECREF(valstr);
-            }
-            Py_DECREF(keystr);
-        }
-        logPythonError();
-    }
-    return ret;
-}
-
-std::string CPluginAlgorithmFactory::getHelp(std::string name){
-    PyObject *className = PyDict_GetItemString(pluginDict, name.c_str());
-    if(className==NULL){
-        ASTRA_ERROR("Plugin %s not found!",name.c_str());
-        PyErr_Clear();
-        return "";
-    }
-    std::string ret = "";
-    PyObject *pyclass;
-    if(PyBytes_Check(className)){
-        std::string str = std::string(PyBytes_AsString(className));
-        pyclass = getClassFromString(str);
-    }else{
-        pyclass = className;
-    }
-    if(pyclass==NULL) return "";
-    if(inspect!=NULL && six!=NULL){
-        PyObject *retVal = PyObject_CallMethod(inspect,"getdoc","O",pyclass);
-        if(retVal!=NULL){
-            if(retVal!=Py_None){
-                PyObject *retb = PyObject_CallMethod(six,"b","O",retVal);
-                if(retb!=NULL){
-                    ret = std::string(PyBytes_AsString(retb));
-                    Py_DECREF(retb);
-                }
-            }
-            Py_DECREF(retVal);
-        }else{
-            logPythonError();
-        }
-    }
-    if(PyBytes_Check(className)){
-        Py_DECREF(pyclass);
-    }
-    return ret;
-}
-
-DEFINE_SINGLETON(CPluginAlgorithmFactory);
-
-#if PY_MAJOR_VERSION >= 3
-PyObject * pyStringFromString(std::string str){
-    return PyUnicode_FromString(str.c_str());
-}
-#else
-PyObject * pyStringFromString(std::string str){
-    return PyBytes_FromString(str.c_str());
-}
-#endif
-
-PyObject* stringToPythonValue(std::string str){
-    if(str.find(";")!=std::string::npos){
-        std::vector<std::string> rows, row;
-        boost::split(rows, str, boost::is_any_of(";"));
-        PyObject *mat = PyList_New(rows.size());
-        for(unsigned int i=0; i<rows.size(); i++){
-            boost::split(row, rows[i], boost::is_any_of(","));
-            PyObject *rowlist = PyList_New(row.size());
-            for(unsigned int j=0;j<row.size();j++){
-                PyList_SetItem(rowlist, j, PyFloat_FromDouble(StringUtil::stringToDouble(row[j])));
-            }
-            PyList_SetItem(mat, i, rowlist);
-        }
-        return mat;
-    }
-    if(str.find(",")!=std::string::npos){
-        std::vector<std::string> vec;
-        boost::split(vec, str, boost::is_any_of(","));
-        PyObject *veclist = PyList_New(vec.size());
-        for(unsigned int i=0;i<vec.size();i++){
-            PyList_SetItem(veclist, i, PyFloat_FromDouble(StringUtil::stringToDouble(vec[i])));
-        }
-        return veclist;
-    }
-    try{
-        return PyLong_FromLong(StringUtil::stringToInt(str));
-    }catch(const StringUtil::bad_cast &){
-        try{
-            return PyFloat_FromDouble(StringUtil::stringToDouble(str));
-        }catch(const StringUtil::bad_cast &){
-            return pyStringFromString(str);
-        }
-    }
-}
-
-PyObject* XMLNode2dict(XMLNode node){
-    PyObject *dct = PyDict_New();
-    PyObject *opts = PyDict_New();
-    if(node.hasAttribute("type")){
-        PyObject *obj = pyStringFromString(node.getAttribute("type").c_str());
-        PyDict_SetItemString(dct, "type", obj);
-        Py_DECREF(obj);
-    }
-    std::list<XMLNode> nodes = node.getNodes();
-    std::list<XMLNode>::iterator it = nodes.begin();
-    while(it!=nodes.end()){
-        XMLNode subnode = *it;
-        if(subnode.getName()=="Option"){
-            PyObject *obj;
-            if(subnode.hasAttribute("value")){
-                obj = stringToPythonValue(subnode.getAttribute("value"));
-            }else{
-                obj = stringToPythonValue(subnode.getContent());
-            }
-            PyDict_SetItemString(opts, subnode.getAttribute("key").c_str(), obj);
-            Py_DECREF(obj);
-        }else{
-            PyObject *obj = stringToPythonValue(subnode.getContent());
-            PyDict_SetItemString(dct, subnode.getName().c_str(), obj);
-            Py_DECREF(obj);
-        }
-        ++it;
-    }
-    PyDict_SetItemString(dct, "options", opts);
-    Py_DECREF(opts);
-    return dct;
-}
-
-}
-#endif