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-rw-r--r--README.md82
-rw-r--r--astra_vc09.sln (renamed from astra_vc08.sln)436
-rw-r--r--astra_vc09.vcproj (renamed from astra_vc08.vcproj)6330
-rw-r--r--astra_vc11.sln54
-rw-r--r--astra_vc11.vcxproj585
-rw-r--r--astra_vc11.vcxproj.filters236
-rw-r--r--build/linux/Makefile.in67
-rw-r--r--build/linux/acinclude.m427
-rwxr-xr-xbuild/linux/autogen.sh7
-rw-r--r--build/linux/configure.ac155
-rw-r--r--build/msvc/gen.py1127
-rw-r--r--cuda/2d/astra.cu309
-rw-r--r--cuda/2d/astra.h39
-rw-r--r--cuda/2d/dims.h12
-rw-r--r--cuda/2d/fft.cu45
-rw-r--r--cuda/2d/util.cu8
-rw-r--r--cuda/3d/cone_bp.cu194
-rw-r--r--cuda/3d/dims3d.h32
-rw-r--r--cuda/3d/par3d_bp.cu104
-rw-r--r--cuda/3d/util3d.cu12
-rw-r--r--include/astra/AsyncAlgorithm.h8
-rw-r--r--include/astra/ConeProjectionGeometry3D.h25
-rw-r--r--include/astra/ConeVecProjectionGeometry3D.h20
-rw-r--r--include/astra/Config.h3
-rw-r--r--include/astra/FanFlatProjectionGeometry2D.h6
-rw-r--r--include/astra/FanFlatVecProjectionGeometry2D.h20
-rw-r--r--include/astra/GeometryUtil2D.h (renamed from src/Logger.cpp)54
-rw-r--r--include/astra/GeometryUtil3D.h73
-rw-r--r--include/astra/Globals.h7
-rw-r--r--include/astra/Logger.h72
-rw-r--r--include/astra/Logging.h159
-rw-r--r--include/astra/ParallelProjectionGeometry2D.h6
-rw-r--r--include/astra/ParallelProjectionGeometry3D.h24
-rw-r--r--include/astra/ParallelVecProjectionGeometry3D.h20
-rw-r--r--include/astra/ProjectionGeometry2D.h6
-rw-r--r--include/astra/ProjectionGeometry3D.h27
-rw-r--r--include/astra/Projector3D.h4
-rw-r--r--include/astra/SparseMatrixProjectionGeometry2D.h8
-rw-r--r--include/astra/VolumeGeometry2D.h6
-rw-r--r--include/astra/VolumeGeometry3D.h6
-rw-r--r--include/astra/XMLDocument.h3
-rw-r--r--include/astra/clog.h693
-rw-r--r--matlab/algorithms/DART/DARTalgorithm.m15
-rw-r--r--matlab/algorithms/DART/IterativeTomography.m435
-rw-r--r--matlab/algorithms/DART/IterativeTomography3D.m405
-rw-r--r--matlab/algorithms/DART/Kernels.m4
-rw-r--r--matlab/algorithms/DART/MaskingDefault.m4
-rw-r--r--matlab/algorithms/DART/MaskingGPU.m4
-rw-r--r--matlab/algorithms/DART/OutputDefault.m4
-rw-r--r--matlab/algorithms/DART/SegmentationDefault.m4
-rw-r--r--matlab/algorithms/DART/SmoothingDefault.m4
-rw-r--r--matlab/algorithms/DART/SmoothingGPU.m4
-rw-r--r--matlab/algorithms/DART/StatisticsDefault.m4
-rw-r--r--matlab/algorithms/DART/examples/example1.m40
-rw-r--r--matlab/algorithms/DART/examples/example2.m55
-rw-r--r--matlab/algorithms/DART/examples/example3.m21
-rw-r--r--matlab/mex/astra_mex.cpp3
-rw-r--r--matlab/mex/astra_mex_algorithm_c.cpp24
-rw-r--r--matlab/mex/astra_mex_algorithm_vc09.vcproj (renamed from matlab/mex/astra_mex_algorithm_vc08.vcproj)309
-rw-r--r--matlab/mex/astra_mex_algorithm_vc11.vcxproj209
-rw-r--r--matlab/mex/astra_mex_c.cpp5
-rw-r--r--matlab/mex/astra_mex_data2d_c.cpp85
-rw-r--r--matlab/mex/astra_mex_data2d_vc09.vcproj (renamed from matlab/mex/astra_mex_data2d_vc08.vcproj)323
-rw-r--r--matlab/mex/astra_mex_data2d_vc11.vcxproj207
-rw-r--r--matlab/mex/astra_mex_data3d_c.cpp93
-rw-r--r--matlab/mex/astra_mex_data3d_vc09.vcproj628
-rw-r--r--matlab/mex/astra_mex_data3d_vc11.vcxproj207
-rw-r--r--matlab/mex/astra_mex_log_c.cpp305
-rw-r--r--matlab/mex/astra_mex_log_vc09.vcproj (renamed from matlab/mex/astra_mex_data3d_vc08.vcproj)310
-rw-r--r--matlab/mex/astra_mex_log_vc11.vcxproj306
-rw-r--r--matlab/mex/astra_mex_matrix_c.cpp5
-rw-r--r--matlab/mex/astra_mex_matrix_vc09.vcproj (renamed from matlab/mex/astra_mex_matrix_vc08.vcproj)307
-rw-r--r--matlab/mex/astra_mex_matrix_vc11.vcxproj207
-rw-r--r--matlab/mex/astra_mex_projector3d_c.cpp29
-rw-r--r--matlab/mex/astra_mex_projector3d_vc09.vcproj (renamed from matlab/mex/astra_mex_projector3d_vc08.vcproj)304
-rw-r--r--matlab/mex/astra_mex_projector3d_vc11.vcxproj206
-rw-r--r--matlab/mex/astra_mex_projector_c.cpp21
-rw-r--r--matlab/mex/astra_mex_projector_vc09.vcproj (renamed from matlab/mex/astra_mex_projector_vc08.vcproj)307
-rw-r--r--matlab/mex/astra_mex_projector_vc11.vcxproj207
-rw-r--r--matlab/mex/astra_mex_vc09.vcproj (renamed from matlab/mex/astra_mex_vc08.vcproj)307
-rw-r--r--matlab/mex/astra_mex_vc11.vcxproj207
-rw-r--r--matlab/mex/mexCopyDataHelpFunctions.cpp44
-rw-r--r--matlab/mex/mexCopyDataHelpFunctions.h10
-rw-r--r--matlab/mex/mexDataManagerHelpFunctions.cpp52
-rw-r--r--matlab/mex/mexDataManagerHelpFunctions.h10
-rw-r--r--matlab/mex/mexHelpFunctions.cpp718
-rw-r--r--matlab/mex/mexHelpFunctions.h45
-rw-r--r--matlab/mex/mexInitFunctions.cpp24
-rw-r--r--matlab/mex/mexInitFunctions.h6
-rw-r--r--matlab/tools/astra_mex_log.m33
-rw-r--r--python/COPYING674
l---------python/LICENSE1
-rw-r--r--python/astra/ASTRAProjector.py135
-rw-r--r--python/astra/PyAlgorithmFactory.pxd36
-rw-r--r--python/astra/PyAlgorithmManager.pxd40
-rw-r--r--python/astra/PyData2DManager.pxd39
-rw-r--r--python/astra/PyData3DManager.pxd39
-rw-r--r--python/astra/PyIncludes.pxd244
-rw-r--r--python/astra/PyMatrixManager.pxd39
-rw-r--r--python/astra/PyProjector2DFactory.pxd35
-rw-r--r--python/astra/PyProjector2DManager.pxd39
-rw-r--r--python/astra/PyProjector3DFactory.pxd35
-rw-r--r--python/astra/PyProjector3DManager.pxd39
-rw-r--r--python/astra/PyXMLDocument.pxd65
-rw-r--r--python/astra/__init__.py44
-rw-r--r--python/astra/algorithm.py76
-rw-r--r--python/astra/algorithm_c.pyx104
-rw-r--r--python/astra/astra.py58
-rw-r--r--python/astra/astra_c.pyx79
-rw-r--r--python/astra/creators.py543
-rw-r--r--python/astra/data2d.py120
-rw-r--r--python/astra/data2d_c.pyx233
-rw-r--r--python/astra/data3d.py118
-rw-r--r--python/astra/data3d_c.pyx197
-rw-r--r--python/astra/extrautils.pyx43
-rw-r--r--python/astra/functions.py270
-rw-r--r--python/astra/log.py153
-rw-r--r--python/astra/log_c.pyx96
-rw-r--r--python/astra/matlab.py112
-rw-r--r--python/astra/matrix.py86
-rw-r--r--python/astra/matrix_c.pyx116
-rw-r--r--python/astra/projector.py110
-rw-r--r--python/astra/projector3d.py100
-rw-r--r--python/astra/projector3d_c.pyx119
-rw-r--r--python/astra/projector_c.pyx134
-rw-r--r--python/astra/utils.pxd35
-rw-r--r--python/astra/utils.pyx236
-rw-r--r--python/builder.py82
l---------python/doc1
-rw-r--r--python/docSRC/ASTRAProjector.rst8
-rw-r--r--python/docSRC/Makefile153
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-rw-r--r--python/docSRC/_build/doctrees/algorithm.doctreebin0 -> 26360 bytes
-rw-r--r--python/docSRC/_build/doctrees/astra.doctreebin0 -> 18750 bytes
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-rw-r--r--python/docSRC/_build/html/.buildinfo4
-rw-r--r--python/docSRC/_build/html/ASTRAProjector.html235
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-rw-r--r--samples/matlab/s001_sinogram_par2d.m (renamed from samples/s001_sinogram_par2d.m)0
-rw-r--r--samples/matlab/s002_data2d.m (renamed from samples/s002_data2d.m)0
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-rw-r--r--samples/matlab/s004_cpu_reconstruction.m (renamed from samples/s004_cpu_reconstruction.m)0
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-rw-r--r--samples/matlab/s013_constraints.m (renamed from samples/s013_constraints.m)0
-rw-r--r--samples/matlab/s014_FBP.m (renamed from samples/s014_FBP.m)0
-rw-r--r--samples/matlab/s015_fp_bp.m (renamed from samples/s015_fp_bp.m)0
-rw-r--r--samples/matlab/s016_plots.m (renamed from samples/s016_plots.m)0
-rw-r--r--samples/python/phantom.matbin0 -> 5583 bytes
-rw-r--r--samples/python/s001_sinogram_par2d.py60
-rw-r--r--samples/python/s002_data2d.py77
-rw-r--r--samples/python/s003_gpu_reconstruction.py75
-rw-r--r--samples/python/s004_cpu_reconstruction.py81
-rw-r--r--samples/python/s005_3d_geometry.py114
-rw-r--r--samples/python/s006_3d_data.py76
-rw-r--r--samples/python/s007_3d_reconstruction.py77
-rw-r--r--samples/python/s008_gpu_selection.py61
-rw-r--r--samples/python/s009_projection_matrix.py65
-rw-r--r--samples/python/s010_supersampling.py85
-rw-r--r--samples/python/s011_object_info.py54
-rw-r--r--samples/python/s012_masks.py92
-rw-r--r--samples/python/s013_constraints.py77
-rw-r--r--samples/python/s014_FBP.py76
-rw-r--r--samples/python/s015_fp_bp.py86
-rw-r--r--samples/python/s016_plots.py86
-rw-r--r--src/AsyncAlgorithm.cpp26
-rw-r--r--src/ConeProjectionGeometry3D.cpp57
-rw-r--r--src/ConeVecProjectionGeometry3D.cpp58
-rw-r--r--src/Config.cpp19
-rw-r--r--src/CudaFilteredBackProjectionAlgorithm.cpp77
-rw-r--r--src/CudaForwardProjectionAlgorithm.cpp65
-rw-r--r--src/CudaForwardProjectionAlgorithm3D.cpp21
-rw-r--r--src/CudaProjector3D.cpp19
-rw-r--r--src/CudaReconstructionAlgorithm2D.cpp75
-rw-r--r--src/FanFlatProjectionGeometry2D.cpp14
-rw-r--r--src/FanFlatVecProjectionGeometry2D.cpp24
-rw-r--r--src/FilteredBackProjectionAlgorithm.cpp4
-rw-r--r--src/GeometryUtil3D.cpp75
-rw-r--r--src/Logging.cpp184
-rw-r--r--src/ParallelProjectionGeometry2D.cpp14
-rw-r--r--src/ParallelProjectionGeometry3D.cpp38
-rw-r--r--src/ParallelVecProjectionGeometry3D.cpp54
-rw-r--r--src/Projector3D.cpp37
-rw-r--r--src/ReconstructionAlgorithm3D.cpp1
-rw-r--r--src/SparseMatrixProjectionGeometry2D.cpp13
-rw-r--r--src/VolumeGeometry2D.cpp20
-rw-r--r--src/VolumeGeometry3D.cpp23
-rw-r--r--src/XMLDocument.cpp8
-rw-r--r--src/XMLNode.cpp10
272 files changed, 28275 insertions, 6745 deletions
diff --git a/README.md b/README.md
new file mode 100644
index 0000000..ec86136
--- /dev/null
+++ b/README.md
@@ -0,0 +1,82 @@
+# The ASTRA Toolbox
+
+The ASTRA Toolbox is a MATLAB toolbox of high-performance GPU primitives for 2D and 3D tomography.
+
+We support 2D parallel and fan beam geometries, and 3D parallel and cone beam. All of them have highly flexible source/detector positioning.
+
+A large number of 2D and 3D algorithms are available, including FBP, SIRT, SART, CGLS.
+
+The basic forward and backward projection operations are GPU-accelerated, and directly callable from MATLAB to enable building new algorithms.
+
+
+
+## Documentation / samples
+
+See the matlab code samples in samples/ and on http://sf.net/projects/astra-toolbox .
+
+
+## Installation instructions
+
+### Windows, binary
+
+Add the mex and tools subdirectories to your matlab path.
+
+### Linux, from source
+
+Requirements: g++, boost, CUDA (driver+toolkit), matlab
+
+```
+cd build/linux
+./configure --with-cuda=/usr/local/cuda \
+ --with-matlab=/usr/local/MATLAB/R2012a \
+ --prefix=/usr/local/astra
+make
+make install
+```
+Add /usr/local/astra/lib to your LD_LIBRARY_PATH.
+Add /usr/local/astra/matlab and its subdirectories (tools, mex)
+ to your matlab path.
+
+
+NB: Each matlab version only supports a specific range of g++ versions.
+Despite this, if you have a newer g++ and if you get errors related to missing
+GLIBCXX_3.4.xx symbols, it is often possible to work around this requirement
+by deleting the version of libstdc++ supplied by matlab in
+MATLAB_PATH/bin/glnx86 or MATLAB_PATH/bin/glnxa64 (at your own risk).
+
+
+### Windows, from source using Visual Studio 2008
+
+Requirements: Visual Studio 2008, boost, CUDA (driver+toolkit), matlab.
+Note that a .zip with all required (and precompiled) boost files is
+ available from our website.
+
+Set the environment variable MATLAB_ROOT to your matlab install location.
+Open astra_vc08.sln in Visual Studio.
+Select the appropriate solution configuration.
+ (typically Release_CUDA|win32 or Release_CUDA|x64)
+Build the solution.
+Install by copying AstraCuda32.dll or AstraCuda64.dll from bin/ and
+ all .mexw32 or .mexw64 files from bin/Release_CUDA or bin/Debug_CUDA
+ and the entire matlab/tools directory to a directory to be added to
+ your matlab path.
+
+
+## References
+
+If you use parallel beam GPU code for your research, we would appreciate it if you would refer to the following paper:
+
+W. J. Palenstijn, K J. Batenburg, and J. Sijbers, "Performance improvements for iterative electron tomography reconstruction using graphics processing units (GPUs)", Journal of Structural Biology, vol. 176, issue 2, pp. 250-253, 2011.
+
+## License
+
+The ASTRA Toolbox is open source under the GPLv3 license.
+
+## Contact
+
+email: astra@uantwerpen.be
+website: http://sf.net/projects/astra-toolbox
+
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
+ http://visielab.uantwerpen.be/ and http://www.cwi.nl/ \ No newline at end of file
diff --git a/astra_vc08.sln b/astra_vc09.sln
index 60f2e25..9b93a0f 100644
--- a/astra_vc08.sln
+++ b/astra_vc09.sln
@@ -1,215 +1,221 @@
-
-Microsoft Visual Studio Solution File, Format Version 10.00
-# Visual Studio 2008
-Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "astra_mex", "astra_mex", "{33EF0AC5-B475-40BF-BAE5-67075B204D10}"
-EndProject
-Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "astra_mex_matrix", "matlab\mex\astra_mex_matrix_vc08.vcproj", "{9D041710-2119-4230-BCF2-5FBE753FDE49}"
- ProjectSection(ProjectDependencies) = postProject
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diff --git a/astra_vc08.vcproj b/astra_vc09.vcproj
index 750a9eb..a56e4bc 100644
--- a/astra_vc08.vcproj
+++ b/astra_vc09.vcproj
@@ -1,3146 +1,3184 @@
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+ Name="Release|Win32"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ <FileConfiguration
+ Name="Release|x64"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ </File>
+ <File
+ RelativePath=".\cuda\3d\par3d_fp.cu"
+ >
+ <FileConfiguration
+ Name="Debug|Win32"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ <FileConfiguration
+ Name="Debug|x64"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ <FileConfiguration
+ Name="Release|Win32"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ <FileConfiguration
+ Name="Release|x64"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ </File>
+ <File
+ RelativePath=".\cuda\3d\sirt3d.cu"
+ >
+ <FileConfiguration
+ Name="Debug|Win32"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ <FileConfiguration
+ Name="Debug|x64"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ <FileConfiguration
+ Name="Release|Win32"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ <FileConfiguration
+ Name="Release|x64"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ </File>
+ <File
+ RelativePath=".\cuda\3d\util3d.cu"
+ >
+ <FileConfiguration
+ Name="Debug|Win32"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ <FileConfiguration
+ Name="Debug|x64"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ <FileConfiguration
+ Name="Release|Win32"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ <FileConfiguration
+ Name="Release|x64"
+ ExcludedFromBuild="true"
+ >
+ <Tool
+ Name="Cudart Build Rule"
+ />
+ </FileConfiguration>
+ </File>
+ </Filter>
+ </Filter>
+ </Files>
+ <Globals>
+ </Globals>
+</VisualStudioProject>
diff --git a/astra_vc11.sln b/astra_vc11.sln
index 784fe7a..2832eab 100644
--- a/astra_vc11.sln
+++ b/astra_vc11.sln
@@ -4,20 +4,49 @@ Microsoft Visual Studio Solution File, Format Version 12.00
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "astra_vc11", "astra_vc11.vcxproj", "{BE9F1326-527C-4284-AE2C-D1E25D539CEA}"
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "astra_mex", "astra_mex", "{5E99A109-374E-4102-BE9B-99BA1FA8AA30}"
+ ProjectSection(ProjectDependencies) = postProject
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA} = {BE9F1326-527C-4284-AE2C-D1E25D539CEA}
+ EndProjectSection
EndProject
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "astra_mex", "matlab\mex\astra_mex_vc11.vcxproj", "{3FDA35E0-0D54-4663-A3E6-5ABA96F32221}"
+ ProjectSection(ProjectDependencies) = postProject
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA} = {BE9F1326-527C-4284-AE2C-D1E25D539CEA}
+ EndProjectSection
EndProject
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "astra_mex_algorithm", "matlab\mex\astra_mex_algorithm_vc11.vcxproj", "{056BF7A9-294D-487C-8CC3-BE629077CA94}"
+ ProjectSection(ProjectDependencies) = postProject
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA} = {BE9F1326-527C-4284-AE2C-D1E25D539CEA}
+ EndProjectSection
EndProject
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "astra_mex_data2d", "matlab\mex\astra_mex_data2d_vc11.vcxproj", "{E4092269-B19C-46F7-A84E-4F146CC70E44}"
+ ProjectSection(ProjectDependencies) = postProject
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA} = {BE9F1326-527C-4284-AE2C-D1E25D539CEA}
+ EndProjectSection
EndProject
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "astra_mex_data3d", "matlab\mex\astra_mex_data3d_vc11.vcxproj", "{0BEC029B-0929-4BF9-BD8B-9C9806A52065}"
+ ProjectSection(ProjectDependencies) = postProject
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA} = {BE9F1326-527C-4284-AE2C-D1E25D539CEA}
+ EndProjectSection
EndProject
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "astra_mex_matrix", "matlab\mex\astra_mex_matrix_vc11.vcxproj", "{9D041710-2119-4230-BCF2-5FBE753FDE49}"
+ ProjectSection(ProjectDependencies) = postProject
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA} = {BE9F1326-527C-4284-AE2C-D1E25D539CEA}
+ EndProjectSection
EndProject
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "astra_mex_projector", "matlab\mex\astra_mex_projector_vc11.vcxproj", "{4DD6056F-8EEE-4C9A-B2A9-923F01A32E97}"
+ ProjectSection(ProjectDependencies) = postProject
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA} = {BE9F1326-527C-4284-AE2C-D1E25D539CEA}
+ EndProjectSection
EndProject
Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "astra_mex_projector3d", "matlab\mex\astra_mex_projector3d_vc11.vcxproj", "{F94CCD79-AA11-42DF-AC8A-6C9D2238A883}"
+ ProjectSection(ProjectDependencies) = postProject
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA} = {BE9F1326-527C-4284-AE2C-D1E25D539CEA}
+ EndProjectSection
+EndProject
+Project("{8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942}") = "astra_mex_log", "matlab\mex\astra_mex_log_vc11.vcxproj", "{03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}"
+ ProjectSection(ProjectDependencies) = postProject
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA} = {BE9F1326-527C-4284-AE2C-D1E25D539CEA}
+ EndProjectSection
EndProject
Global
GlobalSection(SolutionConfigurationPlatforms) = preSolution
@@ -31,10 +60,10 @@ Global
Release|x64 = Release|x64
EndGlobalSection
GlobalSection(ProjectConfigurationPlatforms) = postSolution
- {BE9F1326-527C-4284-AE2C-D1E25D539CEA}.Debug_CUDA|Win32.ActiveCfg = Debug|Win32
- {BE9F1326-527C-4284-AE2C-D1E25D539CEA}.Debug_CUDA|Win32.Build.0 = Debug|Win32
- {BE9F1326-527C-4284-AE2C-D1E25D539CEA}.Debug_CUDA|x64.ActiveCfg = Debug|x64
- {BE9F1326-527C-4284-AE2C-D1E25D539CEA}.Debug_CUDA|x64.Build.0 = Debug|x64
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA}.Debug_CUDA|Win32.ActiveCfg = Debug_CUDA|Win32
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA}.Debug_CUDA|Win32.Build.0 = Debug_CUDA|Win32
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA}.Debug_CUDA|x64.ActiveCfg = Debug_CUDA|x64
+ {BE9F1326-527C-4284-AE2C-D1E25D539CEA}.Debug_CUDA|x64.Build.0 = Debug_CUDA|x64
{BE9F1326-527C-4284-AE2C-D1E25D539CEA}.Debug|Win32.ActiveCfg = Debug|Win32
{BE9F1326-527C-4284-AE2C-D1E25D539CEA}.Debug|Win32.Build.0 = Debug|Win32
{BE9F1326-527C-4284-AE2C-D1E25D539CEA}.Debug|x64.ActiveCfg = Debug|x64
@@ -159,6 +188,22 @@ Global
{F94CCD79-AA11-42DF-AC8A-6C9D2238A883}.Release|Win32.Build.0 = Release|Win32
{F94CCD79-AA11-42DF-AC8A-6C9D2238A883}.Release|x64.ActiveCfg = Release|x64
{F94CCD79-AA11-42DF-AC8A-6C9D2238A883}.Release|x64.Build.0 = Release|x64
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Debug_CUDA|Win32.ActiveCfg = Debug_CUDA|Win32
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Debug_CUDA|Win32.Build.0 = Debug_CUDA|Win32
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Debug_CUDA|x64.ActiveCfg = Debug_CUDA|x64
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Debug_CUDA|x64.Build.0 = Debug_CUDA|x64
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Debug|Win32.ActiveCfg = Debug|Win32
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Debug|Win32.Build.0 = Debug|Win32
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Debug|x64.ActiveCfg = Debug|x64
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Debug|x64.Build.0 = Debug|x64
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Release_CUDA|Win32.ActiveCfg = Release_CUDA|Win32
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Release_CUDA|Win32.Build.0 = Release_CUDA|Win32
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Release_CUDA|x64.ActiveCfg = Release_CUDA|x64
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Release_CUDA|x64.Build.0 = Release_CUDA|x64
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Release|Win32.ActiveCfg = Release|Win32
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Release|Win32.Build.0 = Release|Win32
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Release|x64.ActiveCfg = Release|x64
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}.Release|x64.Build.0 = Release|x64
EndGlobalSection
GlobalSection(SolutionProperties) = preSolution
HideSolutionNode = FALSE
@@ -171,5 +216,6 @@ Global
{9D041710-2119-4230-BCF2-5FBE753FDE49} = {5E99A109-374E-4102-BE9B-99BA1FA8AA30}
{4DD6056F-8EEE-4C9A-B2A9-923F01A32E97} = {5E99A109-374E-4102-BE9B-99BA1FA8AA30}
{F94CCD79-AA11-42DF-AC8A-6C9D2238A883} = {5E99A109-374E-4102-BE9B-99BA1FA8AA30}
+ {03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E} = {5E99A109-374E-4102-BE9B-99BA1FA8AA30}
EndGlobalSection
EndGlobal
diff --git a/astra_vc11.vcxproj b/astra_vc11.vcxproj
index d0a52e0..bc11b23 100644
--- a/astra_vc11.vcxproj
+++ b/astra_vc11.vcxproj
@@ -1,6 +1,14 @@
<?xml version="1.0" encoding="utf-8"?>
<Project DefaultTargets="Build" ToolsVersion="4.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
<ItemGroup Label="ProjectConfigurations">
+ <ProjectConfiguration Include="Debug_CUDA|Win32">
+ <Configuration>Debug_CUDA</Configuration>
+ <Platform>Win32</Platform>
+ </ProjectConfiguration>
+ <ProjectConfiguration Include="Debug_CUDA|x64">
+ <Configuration>Debug_CUDA</Configuration>
+ <Platform>x64</Platform>
+ </ProjectConfiguration>
<ProjectConfiguration Include="Debug|Win32">
<Configuration>Debug</Configuration>
<Platform>Win32</Platform>
@@ -31,40 +39,52 @@
<RootNamespace>astra_vc11</RootNamespace>
</PropertyGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.Default.props" />
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'" Label="Configuration">
+ <ConfigurationType>DynamicLibrary</ConfigurationType>
+ <UseDebugLibraries>true</UseDebugLibraries>
+ <PlatformToolset>v110</PlatformToolset>
+ <CharacterSet>MultiByte</CharacterSet>
+ </PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="Configuration">
+ <ConfigurationType>DynamicLibrary</ConfigurationType>
+ <UseDebugLibraries>true</UseDebugLibraries>
+ <PlatformToolset>v110</PlatformToolset>
+ <CharacterSet>MultiByte</CharacterSet>
+ </PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
- <ConfigurationType>Application</ConfigurationType>
+ <ConfigurationType>DynamicLibrary</ConfigurationType>
<UseDebugLibraries>true</UseDebugLibraries>
<PlatformToolset>v110</PlatformToolset>
<CharacterSet>MultiByte</CharacterSet>
</PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'" Label="Configuration">
- <ConfigurationType>Application</ConfigurationType>
+ <ConfigurationType>DynamicLibrary</ConfigurationType>
<UseDebugLibraries>true</UseDebugLibraries>
<PlatformToolset>v110</PlatformToolset>
<CharacterSet>MultiByte</CharacterSet>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
- <ConfigurationType>Application</ConfigurationType>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="Configuration">
+ <ConfigurationType>DynamicLibrary</ConfigurationType>
<UseDebugLibraries>false</UseDebugLibraries>
<PlatformToolset>v110</PlatformToolset>
<WholeProgramOptimization>true</WholeProgramOptimization>
<CharacterSet>MultiByte</CharacterSet>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="Configuration">
- <ConfigurationType>Application</ConfigurationType>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'" Label="Configuration">
+ <ConfigurationType>DynamicLibrary</ConfigurationType>
<UseDebugLibraries>false</UseDebugLibraries>
<PlatformToolset>v110</PlatformToolset>
<WholeProgramOptimization>true</WholeProgramOptimization>
<CharacterSet>MultiByte</CharacterSet>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<UseDebugLibraries>false</UseDebugLibraries>
<PlatformToolset>v110</PlatformToolset>
<WholeProgramOptimization>true</WholeProgramOptimization>
<CharacterSet>MultiByte</CharacterSet>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<UseDebugLibraries>false</UseDebugLibraries>
<PlatformToolset>v110</PlatformToolset>
@@ -75,136 +95,282 @@
<ImportGroup Label="ExtensionSettings">
<Import Project="$(VCTargetsPath)\BuildCustomizations\CUDA 5.5.props" />
</ImportGroup>
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
+ <Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
+ </ImportGroup>
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
+ <Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
+ </ImportGroup>
<ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
<PropertyGroup Label="UserMacros" />
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
+ <IncludePath>$(CUDA_INC_PATH);$(IncludePath)</IncludePath>
+ <LibraryPath>$(CUDA_LIB_PATH);$(LibraryPath)</LibraryPath>
+ <OutDir>$(SolutionDir)bin\$(Platform)\Debug_CUDA\</OutDir>
+ <IntDir>$(OutDir)obj\</IntDir>
+ <TargetExt>.dll</TargetExt>
+ <TargetName>AstraCuda32D</TargetName>
+ <GenerateManifest>true</GenerateManifest>
+ </PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
+ <IncludePath>$(CUDA_INC_PATH);$(IncludePath)</IncludePath>
+ <LibraryPath>$(CUDA_LIB_PATH);$(LibraryPath)</LibraryPath>
+ <OutDir>$(SolutionDir)bin\$(Platform)\Debug_CUDA\</OutDir>
+ <IntDir>$(OutDir)obj\</IntDir>
+ <TargetExt>.dll</TargetExt>
+ <TargetName>AstraCuda64D</TargetName>
+ <GenerateManifest>true</GenerateManifest>
+ </PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
+ <OutDir>$(SolutionDir)bin\$(Platform)\Debug\</OutDir>
+ <IntDir>$(OutDir)obj\</IntDir>
+ <TargetExt>.dll</TargetExt>
+ <TargetName>Astra32D</TargetName>
+ <GenerateManifest>true</GenerateManifest>
+ </PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
+ <OutDir>$(SolutionDir)bin\$(Platform)\Debug\</OutDir>
+ <IntDir>$(OutDir)obj\</IntDir>
+ <TargetExt>.dll</TargetExt>
+ <TargetName>Astra64D</TargetName>
+ <GenerateManifest>true</GenerateManifest>
+ </PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
<IncludePath>$(CUDA_INC_PATH);$(IncludePath)</IncludePath>
<LibraryPath>$(CUDA_LIB_PATH);$(LibraryPath)</LibraryPath>
<OutDir>$(SolutionDir)bin\$(Platform)\Release_CUDA\</OutDir>
<IntDir>$(OutDir)obj\</IntDir>
<TargetExt>.dll</TargetExt>
+ <TargetName>AstraCuda32</TargetName>
+ <GenerateManifest>true</GenerateManifest>
</PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
<IncludePath>$(CUDA_INC_PATH);$(IncludePath)</IncludePath>
<LibraryPath>$(CUDA_LIB_PATH);$(LibraryPath)</LibraryPath>
<OutDir>$(SolutionDir)bin\$(Platform)\Release_CUDA\</OutDir>
- <IntDir>$(OutDir)\obj\</IntDir>
+ <IntDir>$(OutDir)obj\</IntDir>
<TargetExt>.dll</TargetExt>
- <GenerateManifest>true</GenerateManifest>
<TargetName>AstraCuda64</TargetName>
+ <GenerateManifest>true</GenerateManifest>
+ </PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
+ <OutDir>$(SolutionDir)bin\$(Platform)\Release\</OutDir>
+ <IntDir>$(OutDir)obj\</IntDir>
+ <TargetExt>.dll</TargetExt>
+ <TargetName>Astra32</TargetName>
+ <GenerateManifest>true</GenerateManifest>
+ </PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
+ <OutDir>$(SolutionDir)bin\$(Platform)\Release\</OutDir>
+ <IntDir>$(OutDir)obj\</IntDir>
+ <TargetExt>.dll</TargetExt>
+ <TargetName>Astra64</TargetName>
+ <GenerateManifest>true</GenerateManifest>
</PropertyGroup>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
+ <ClCompile>
+ <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <WarningLevel>Level3</WarningLevel>
+ <AdditionalIncludeDirectories>lib\include;include\;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
+ <OpenMPSupport>true</OpenMPSupport>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>Disabled</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;DLL_EXPORTS;_CRT_SECURE_NO_WARNINGS;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
+ <SDLCheck>true</SDLCheck>
+ </ClCompile>
+ <Link>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
+ <OutputFile>bin\Win32\Debug_CUDA\AstraCuda32D.dll</OutputFile>
+ <AdditionalDependencies>cudart.lib;cufft.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>lib\win32;%(AdditionalLibraryDirectories);$(CudaToolkitLibDir)</AdditionalLibraryDirectories>
+ </Link>
+ <CudaCompile>
+ <TargetMachinePlatform>32</TargetMachinePlatform>
+ <GenerateLineInfo>true</GenerateLineInfo>
+ <CodeGeneration>compute_20,sm_20;compute_30,sm_30;compute_30,sm_35;compute_30,compute_30</CodeGeneration>
+ </CudaCompile>
+ </ItemDefinitionGroup>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
+ <ClCompile>
+ <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <WarningLevel>Level3</WarningLevel>
+ <AdditionalIncludeDirectories>lib\include;include\;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
+ <OpenMPSupport>true</OpenMPSupport>
+ <Optimization>Disabled</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;DLL_EXPORTS;_CRT_SECURE_NO_WARNINGS;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
+ <SDLCheck>true</SDLCheck>
+ </ClCompile>
+ <Link>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
+ <OutputFile>bin\x64\Debug_CUDA\AstraCuda64D.dll</OutputFile>
+ <AdditionalDependencies>cudart.lib;cufft.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>lib\x64;%(AdditionalLibraryDirectories);$(CudaToolkitLibDir)</AdditionalLibraryDirectories>
+ </Link>
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+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\2d\darthelper.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\2d\em.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\2d\fan_bp.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\2d\fan_fp.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\2d\fft.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\2d\par_bp.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\2d\par_fp.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\2d\sart.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\2d\sirt.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\2d\util.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\3d\algo3d.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\3d\arith3d.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\3d\astra3d.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\3d\cgls3d.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\3d\cone_bp.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\3d\cone_fp.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\3d\darthelper3d.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\3d\fdk.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\3d\par3d_bp.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\3d\par3d_fp.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\3d\sirt3d.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
+ <CudaCompile Include="cuda\3d\util3d.cu">
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</ExcludedFromBuild>
+ <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release|x64'">true</ExcludedFromBuild>
+ </CudaCompile>
</ItemGroup>
<ItemGroup>
<None Include="include\astra\DataProjectorPolicies.inl" />
<None Include="include\astra\FanFlatBeamLineKernelProjector2D.inl" />
<None Include="include\astra\FanFlatBeamStripKernelProjector2D.inl" />
<None Include="include\astra\ParallelBeamBlobKernelProjector2D.inl" />
- <None Include="include\astra\ParallelBeamLinearKernelProjector2D.inl" />
<None Include="include\astra\ParallelBeamLineKernelProjector2D.inl" />
+ <None Include="include\astra\ParallelBeamLinearKernelProjector2D.inl" />
<None Include="include\astra\ParallelBeamStripKernelProjector2D.inl" />
<None Include="include\astra\SparseMatrixProjector2D.inl" />
</ItemGroup>
diff --git a/astra_vc11.vcxproj.filters b/astra_vc11.vcxproj.filters
index 404f34e..a597962 100644
--- a/astra_vc11.vcxproj.filters
+++ b/astra_vc11.vcxproj.filters
@@ -4,76 +4,76 @@
<CudaCompile Include="cuda\2d\algo.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\3d\algo3d.cu">
+ <CudaCompile Include="cuda\2d\arith.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\arith.cu">
+ <CudaCompile Include="cuda\2d\astra.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\3d\arith3d.cu">
+ <CudaCompile Include="cuda\2d\cgls.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\astra.cu">
+ <CudaCompile Include="cuda\2d\darthelper.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\3d\astra3d.cu">
+ <CudaCompile Include="cuda\2d\em.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\cgls.cu">
+ <CudaCompile Include="cuda\2d\fan_bp.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\3d\cgls3d.cu">
+ <CudaCompile Include="cuda\2d\fan_fp.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\3d\cone_bp.cu">
+ <CudaCompile Include="cuda\2d\fft.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\3d\cone_fp.cu">
+ <CudaCompile Include="cuda\2d\par_bp.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\darthelper.cu">
+ <CudaCompile Include="cuda\2d\par_fp.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\3d\darthelper3d.cu">
+ <CudaCompile Include="cuda\2d\sart.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\em.cu">
+ <CudaCompile Include="cuda\2d\sirt.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\fan_bp.cu">
+ <CudaCompile Include="cuda\2d\util.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\fan_fp.cu">
+ <CudaCompile Include="cuda\3d\algo3d.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\3d\fdk.cu">
+ <CudaCompile Include="cuda\3d\arith3d.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\fft.cu">
+ <CudaCompile Include="cuda\3d\astra3d.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\3d\par3d_bp.cu">
+ <CudaCompile Include="cuda\3d\cgls3d.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\3d\par3d_fp.cu">
+ <CudaCompile Include="cuda\3d\cone_bp.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\par_bp.cu">
+ <CudaCompile Include="cuda\3d\cone_fp.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\par_fp.cu">
+ <CudaCompile Include="cuda\3d\darthelper3d.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\sart.cu">
+ <CudaCompile Include="cuda\3d\fdk.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\sirt.cu">
+ <CudaCompile Include="cuda\3d\par3d_bp.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\3d\sirt3d.cu">
+ <CudaCompile Include="cuda\3d\par3d_fp.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
- <CudaCompile Include="cuda\2d\util.cu">
+ <CudaCompile Include="cuda\3d\sirt3d.cu">
<Filter>CUDA\cuda source</Filter>
</CudaCompile>
<CudaCompile Include="cuda\3d\util3d.cu">
@@ -162,7 +162,7 @@
<ClCompile Include="src\Globals.cpp">
<Filter>Global &amp; Other\source</Filter>
</ClCompile>
- <ClCompile Include="src\Logger.cpp">
+ <ClCompile Include="src\Logging.cpp">
<Filter>Global &amp; Other\source</Filter>
</ClCompile>
<ClCompile Include="src\PlatformDepSystemCode.cpp">
@@ -189,6 +189,9 @@
<ClCompile Include="src\FanFlatVecProjectionGeometry2D.cpp">
<Filter>Geometries\source</Filter>
</ClCompile>
+ <ClCompile Include="src\GeometryUtil3D.cpp">
+ <Filter>Geometries\source</Filter>
+ </ClCompile>
<ClCompile Include="src\ParallelProjectionGeometry2D.cpp">
<Filter>Geometries\source</Filter>
</ClCompile>
@@ -329,7 +332,10 @@
<ClInclude Include="include\astra\CglsAlgorithm.h">
<Filter>Algorithms\headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\DartAlgorithm.h">
+ <ClInclude Include="include\astra\CudaBackProjectionAlgorithm.h">
+ <Filter>Algorithms\headers</Filter>
+ </ClInclude>
+ <ClInclude Include="include\astra\CudaBackProjectionAlgorithm3D.h">
<Filter>Algorithms\headers</Filter>
</ClInclude>
<ClInclude Include="include\astra\FilteredBackProjectionAlgorithm.h">
@@ -389,6 +395,9 @@
<ClInclude Include="include\astra\AstraObjectManager.h">
<Filter>Global &amp; Other\headers</Filter>
</ClInclude>
+ <ClInclude Include="include\astra\clog.h">
+ <Filter>Global &amp; Other\headers</Filter>
+ </ClInclude>
<ClInclude Include="include\astra\Config.h">
<Filter>Global &amp; Other\headers</Filter>
</ClInclude>
@@ -398,7 +407,7 @@
<ClInclude Include="include\astra\Globals.h">
<Filter>Global &amp; Other\headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\Logger.h">
+ <ClInclude Include="include\astra\Logging.h">
<Filter>Global &amp; Other\headers</Filter>
</ClInclude>
<ClInclude Include="include\astra\PlatformDepSystemCode.h">
@@ -410,6 +419,9 @@
<ClInclude Include="include\astra\TypeList.h">
<Filter>Global &amp; Other\headers</Filter>
</ClInclude>
+ <ClInclude Include="include\astra\Utilities.h">
+ <Filter>Global &amp; Other\headers</Filter>
+ </ClInclude>
<ClInclude Include="include\astra\Vector3D.h">
<Filter>Global &amp; Other\headers</Filter>
</ClInclude>
@@ -431,6 +443,12 @@
<ClInclude Include="include\astra\FanFlatVecProjectionGeometry2D.h">
<Filter>Geometries\headers</Filter>
</ClInclude>
+ <ClInclude Include="include\astra\GeometryUtil2D.h">
+ <Filter>Geometries\headers</Filter>
+ </ClInclude>
+ <ClInclude Include="include\astra\GeometryUtil3D.h">
+ <Filter>Geometries\headers</Filter>
+ </ClInclude>
<ClInclude Include="include\astra\ParallelProjectionGeometry2D.h">
<Filter>Geometries\headers</Filter>
</ClInclude>
@@ -491,46 +509,79 @@
<ClInclude Include="include\astra\SparseMatrixProjector2D.h">
<Filter>Projectors\headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\2d\algo.h">
- <Filter>CUDA\cuda headers</Filter>
+ <ClInclude Include="include\astra\CudaCglsAlgorithm.h">
+ <Filter>CUDA\astra headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\3d\algo3d.h">
- <Filter>CUDA\cuda headers</Filter>
+ <ClInclude Include="include\astra\CudaCglsAlgorithm3D.h">
+ <Filter>CUDA\astra headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\2d\arith.h">
- <Filter>CUDA\cuda headers</Filter>
+ <ClInclude Include="include\astra\CudaDartMaskAlgorithm.h">
+ <Filter>CUDA\astra headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\3d\arith3d.h">
- <Filter>CUDA\cuda headers</Filter>
+ <ClInclude Include="include\astra\CudaDartMaskAlgorithm3D.h">
+ <Filter>CUDA\astra headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\2d\astra.h">
- <Filter>CUDA\cuda headers</Filter>
+ <ClInclude Include="include\astra\CudaDartSmoothingAlgorithm.h">
+ <Filter>CUDA\astra headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\3d\astra3d.h">
- <Filter>CUDA\cuda headers</Filter>
+ <ClInclude Include="include\astra\CudaDartSmoothingAlgorithm3D.h">
+ <Filter>CUDA\astra headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\2d\cgls.h">
- <Filter>CUDA\cuda headers</Filter>
+ <ClInclude Include="include\astra\CudaDataOperationAlgorithm.h">
+ <Filter>CUDA\astra headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\3d\cgls3d.h">
- <Filter>CUDA\cuda headers</Filter>
+ <ClInclude Include="include\astra\CudaEMAlgorithm.h">
+ <Filter>CUDA\astra headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\3d\cone_bp.h">
+ <ClInclude Include="include\astra\CudaFDKAlgorithm3D.h">
+ <Filter>CUDA\astra headers</Filter>
+ </ClInclude>
+ <ClInclude Include="include\astra\CudaFilteredBackProjectionAlgorithm.h">
+ <Filter>CUDA\astra headers</Filter>
+ </ClInclude>
+ <ClInclude Include="include\astra\CudaForwardProjectionAlgorithm.h">
+ <Filter>CUDA\astra headers</Filter>
+ </ClInclude>
+ <ClInclude Include="include\astra\CudaForwardProjectionAlgorithm3D.h">
+ <Filter>CUDA\astra headers</Filter>
+ </ClInclude>
+ <ClInclude Include="include\astra\CudaProjector2D.h">
+ <Filter>CUDA\astra headers</Filter>
+ </ClInclude>
+ <ClInclude Include="include\astra\CudaProjector3D.h">
+ <Filter>CUDA\astra headers</Filter>
+ </ClInclude>
+ <ClInclude Include="include\astra\CudaReconstructionAlgorithm2D.h">
+ <Filter>CUDA\astra headers</Filter>
+ </ClInclude>
+ <ClInclude Include="include\astra\CudaRoiSelectAlgorithm.h">
+ <Filter>CUDA\astra headers</Filter>
+ </ClInclude>
+ <ClInclude Include="include\astra\CudaSartAlgorithm.h">
+ <Filter>CUDA\astra headers</Filter>
+ </ClInclude>
+ <ClInclude Include="include\astra\CudaSirtAlgorithm.h">
+ <Filter>CUDA\astra headers</Filter>
+ </ClInclude>
+ <ClInclude Include="include\astra\CudaSirtAlgorithm3D.h">
+ <Filter>CUDA\astra headers</Filter>
+ </ClInclude>
+ <ClInclude Include="cuda\2d\algo.h">
<Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\3d\cone_fp.h">
+ <ClInclude Include="cuda\2d\arith.h">
<Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\2d\darthelper.h">
+ <ClInclude Include="cuda\2d\astra.h">
<Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\3d\darthelper3d.h">
+ <ClInclude Include="cuda\2d\cgls.h">
<Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\2d\dims.h">
+ <ClInclude Include="cuda\2d\darthelper.h">
<Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\3d\dims3d.h">
+ <ClInclude Include="cuda\2d\dims.h">
<Filter>CUDA\cuda headers</Filter>
</ClInclude>
<ClInclude Include="cuda\2d\em.h">
@@ -545,18 +596,9 @@
<ClInclude Include="cuda\2d\fbp_filters.h">
<Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\3d\fdk.h">
- <Filter>CUDA\cuda headers</Filter>
- </ClInclude>
<ClInclude Include="cuda\2d\fft.h">
<Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\3d\par3d_bp.h">
- <Filter>CUDA\cuda headers</Filter>
- </ClInclude>
- <ClInclude Include="cuda\3d\par3d_fp.h">
- <Filter>CUDA\cuda headers</Filter>
- </ClInclude>
<ClInclude Include="cuda\2d\par_bp.h">
<Filter>CUDA\cuda headers</Filter>
</ClInclude>
@@ -569,74 +611,44 @@
<ClInclude Include="cuda\2d\sirt.h">
<Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="cuda\3d\sirt3d.h">
- <Filter>CUDA\cuda headers</Filter>
- </ClInclude>
<ClInclude Include="cuda\2d\util.h">
<Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\CudaBackProjectionAlgorithm.h">
- <Filter>CUDA\astra headers</Filter>
- </ClInclude>
- <ClInclude Include="include\astra\CudaBackProjectionAlgorithm3D.h">
- <Filter>CUDA\astra headers</Filter>
- </ClInclude>
- <ClInclude Include="include\astra\CudaCglsAlgorithm.h">
- <Filter>CUDA\astra headers</Filter>
- </ClInclude>
- <ClInclude Include="include\astra\CudaCglsAlgorithm3D.h">
- <Filter>CUDA\astra headers</Filter>
- </ClInclude>
- <ClInclude Include="include\astra\CudaDartMaskAlgorithm.h">
- <Filter>CUDA\astra headers</Filter>
- </ClInclude>
- <ClInclude Include="include\astra\CudaDartMaskAlgorithm3D.h">
- <Filter>CUDA\astra headers</Filter>
- </ClInclude>
- <ClInclude Include="include\astra\CudaDartSmoothingAlgorithm.h">
- <Filter>CUDA\astra headers</Filter>
- </ClInclude>
- <ClInclude Include="include\astra\CudaDartSmoothingAlgorithm3D.h">
- <Filter>CUDA\astra headers</Filter>
- </ClInclude>
- <ClInclude Include="include\astra\CudaDataOperationAlgorithm.h">
- <Filter>CUDA\astra headers</Filter>
- </ClInclude>
- <ClInclude Include="include\astra\CudaEMAlgorithm.h">
- <Filter>CUDA\astra headers</Filter>
+ <ClInclude Include="cuda\3d\algo3d.h">
+ <Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\CudaFDKAlgorithm3D.h">
- <Filter>CUDA\astra headers</Filter>
+ <ClInclude Include="cuda\3d\arith3d.h">
+ <Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\CudaFilteredBackProjectionAlgorithm.h">
- <Filter>CUDA\astra headers</Filter>
+ <ClInclude Include="cuda\3d\astra3d.h">
+ <Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\CudaForwardProjectionAlgorithm.h">
- <Filter>CUDA\astra headers</Filter>
+ <ClInclude Include="cuda\3d\cgls3d.h">
+ <Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\CudaForwardProjectionAlgorithm3D.h">
- <Filter>CUDA\astra headers</Filter>
+ <ClInclude Include="cuda\3d\cone_bp.h">
+ <Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\CudaProjector2D.h">
- <Filter>CUDA\astra headers</Filter>
+ <ClInclude Include="cuda\3d\cone_fp.h">
+ <Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\CudaProjector3D.h">
- <Filter>CUDA\astra headers</Filter>
+ <ClInclude Include="cuda\3d\darthelper3d.h">
+ <Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\CudaReconstructionAlgorithm2D.h">
- <Filter>CUDA\astra headers</Filter>
+ <ClInclude Include="cuda\3d\dims3d.h">
+ <Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\CudaRoiSelectAlgorithm.h">
- <Filter>CUDA\astra headers</Filter>
+ <ClInclude Include="cuda\3d\fdk.h">
+ <Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\CudaSartAlgorithm.h">
- <Filter>CUDA\astra headers</Filter>
+ <ClInclude Include="cuda\3d\par3d_bp.h">
+ <Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\CudaSirtAlgorithm.h">
- <Filter>CUDA\astra headers</Filter>
+ <ClInclude Include="cuda\3d\par3d_fp.h">
+ <Filter>CUDA\cuda headers</Filter>
</ClInclude>
- <ClInclude Include="include\astra\CudaSirtAlgorithm3D.h">
- <Filter>CUDA\astra headers</Filter>
+ <ClInclude Include="cuda\3d\sirt3d.h">
+ <Filter>CUDA\cuda headers</Filter>
</ClInclude>
<ClInclude Include="cuda\3d\util3d.h">
<Filter>CUDA\cuda headers</Filter>
diff --git a/build/linux/Makefile.in b/build/linux/Makefile.in
index a7ac1f2..0dfa15a 100644
--- a/build/linux/Makefile.in
+++ b/build/linux/Makefile.in
@@ -1,5 +1,8 @@
cuda=@HAVECUDA@
matlab=@HAVEMATLAB@
+python=@HAVEPYTHON@
+boostutf=@HAVEBOOSTUTF@
+
MATLAB_ROOT=@MATLAB_ROOT@
@@ -9,6 +12,10 @@ ifeq ($(matlab),yes)
TARGETS+=mex
endif
+ifeq ($(python),yes)
+TARGETS+=py
+endif
+
all: $(TARGETS)
prefix=@prefix@
@@ -19,12 +26,15 @@ VPATH=../..
CPPFLAGS=@SAVED_CPPFLAGS@
CXXFLAGS=@SAVED_CXXFLAGS@
LDFLAGS=@SAVED_LDFLAGS@
+LIBS=@SAVED_LIBS@
CPPFLAGS+=-I../.. -I../../include -I../../lib/include/rapidxml
CXXFLAGS+=-g -O3 -Wall -Wshadow
-LIBS=-lpthread -lrt
+LIBS+=-lpthread
LDFLAGS+=-g
+CPPFLAGS+=@CPPFLAGS_OS@
+
ifeq ($(cuda),yes)
CPPFLAGS += @CPPFLAGS_CUDA@ -DASTRA_CUDA
NVCCFLAGS = @NVCCFLAGS@ @CPPFLAGS_CUDA@ -I../.. -I../../include -DASTRA_CUDA
@@ -39,9 +49,19 @@ CXXFLAGS+=-fopenmp
LDFLAGS+=-fopenmp
endif
+ifeq ($(python),yes)
+PYCPPFLAGS = ${CPPFLAGS}
+PYCPPFLAGS += -I../include
+PYLDFLAGS = ${LDFLAGS}
+PYLDFLAGS += -L../build/linux/.libs
+PYTHON = @PYTHON@
+endif
+
BOOST_CPPFLAGS=
BOOST_LDFLAGS=
+BOOSTUTF_LIBS=@LIBS_BOOSTUTF@
+
CPPFLAGS+=$(BOOST_CPPFLAGS)
LDFLAGS+=$(BOOST_LDFLAGS)
@@ -53,7 +73,7 @@ LD=@CXX@
SHELL=@SHELL@
ifeq ($(matlab),yes)
-MEXFLAGS = -cxx
+MEXFLAGS = -cxx
MEXLDFLAGS='$$LDFLAGS $(LDFLAGS)'
MEXLIBS = -L.libs -lut
MEXSUFFIX = @MEXSUFFIX@
@@ -101,8 +121,9 @@ BASE_OBJECTS=\
src/Float32VolumeData3DMemory.lo \
src/ForwardProjectionAlgorithm.lo \
src/Fourier.lo \
+ src/GeometryUtil3D.lo \
src/Globals.lo \
- src/Logger.lo \
+ src/Logging.lo \
src/ParallelBeamBlobKernelProjector2D.lo \
src/ParallelBeamLinearKernelProjector2D.lo \
src/ParallelBeamLineKernelProjector2D.lo \
@@ -200,6 +221,7 @@ TEST_OBJECTS=\
MATLAB_CXX_OBJECTS=\
matlab/mex/mexHelpFunctions.o \
matlab/mex/mexCopyDataHelpFunctions.o \
+ matlab/mex/mexInitFunctions.o \
matlab/mex/mexDataManagerHelpFunctions.o
MATLAB_MEX=\
@@ -209,6 +231,7 @@ MATLAB_MEX=\
matlab/mex/astra_mex_matrix_c.$(MEXSUFFIX) \
matlab/mex/astra_mex_projector_c.$(MEXSUFFIX) \
matlab/mex/astra_mex_projector3d_c.$(MEXSUFFIX) \
+ matlab/mex/astra_mex_log_c.$(MEXSUFFIX) \
matlab/mex/astra_mex_data3d_c.$(MEXSUFFIX)
@@ -225,6 +248,14 @@ mex: $(MATLAB_MEX)
$(MEX) LDFLAGS=$(MEXLDFLAGS) $(MEXFLAGS) $(LIBS) $(MEXLIBS) -lastra -output $* $*.o $(MATLAB_CXX_OBJECTS)
endif
+ifeq ($(python),yes)
+py: libastra.la
+ cd ../../python; CPPFLAGS="${PYCPPFLAGS}" LDFLAGS="${PYLDFLAGS}" $(PYTHON) builder.py install \
+ --install-base=./finalbuild --install-headers=./finalbuild --install-purelib=./finalbuild \
+ --install-platlib=./finalbuild --install-scripts=./finalbuild --install-data=./finalbuild
+endif
+
+
libastra.la: $(ALL_OBJECTS)
./libtool --mode=link --tag=CXX $(LD) -rpath $(LIBDIR) -o $@ $(LDFLAGS) $(LIBS) $+
@@ -264,11 +295,16 @@ ifeq ($(cuda),yes)
@rm -f $(*F).linkinfo
endif
+ifeq ($(boostutf),yes)
test.bin: $(ALL_OBJECTS) $(TEST_OBJECTS)
- ./libtool --mode=link $(LD) -o $@ $(LDFLAGS) $(LIBS) $+ -lboost_unit_test_framework
+ ./libtool --mode=link $(LD) -o $@ $(LDFLAGS) $+ $(LIBS) $(BOOSTUTF_LIBS)
test: test.bin
./test.bin
+else
+test:
+ @echo "Tests have been disabled by configure"
+endif
clean:
rm -f $(MATLAB_MEX) libastra.la
@@ -277,6 +313,10 @@ clean:
rm -f $(addsuffix /*.d,$(DEPDIRS))
rm -f $(addsuffix /*,$(LIBDIRS))
rm -f $(TEST_OBJECTS) test.bin
+ rm -fr ../../python/finalbuild/
+ rm -fr ../../python/build/
+ rm -f ../../python/astra/*.cpp
+ rm -f ../../python/astra/*.c
distclean: clean
rm -f config.guess config.sub ltmain.sh libtool install-sh
@@ -285,7 +325,7 @@ distclean: clean
rm -rf autom4te.cache
rm -f configure Makefile
-install: install-libraries install-matlab
+install: install-libraries install-matlab install-python
install-libraries: libastra.la
./install-sh -m 755 -d @libdir@
@@ -305,6 +345,23 @@ else
install-matlab:
endif
+ifeq ($(python),yes)
+# TODO: This install location doesn't work well for /usr or /usr/local
+install-python: py
+ ./install-sh -m 755 -d @prefix@/python
+ ./install-sh -m 755 -d @prefix@/python/astra
+ ./install-sh -m 644 ../../python/finalbuild/astra/*.so @prefix@/python/astra
+ ./install-sh -m 644 ../../python/finalbuild/astra/*.py @prefix@/python/astra
+ ./install-sh -m 644 ../../python/finalbuild/*.egg-info @prefix@/python/
+ @echo "++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++"
+ @echo "To use ASTRA in Python, add @prefix@/python/ to your PYTHONPATH"
+ @echo "and @libdir@ to your LD_LIBRARY_PATH."
+ @echo "++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++"
+# TODO: docs
+else
+install-python:
+endif
+
Makefile: Makefile.in config.status
CONFIG_HEADERS= CONFIG_LINKS= CONFIG_FILES=$@ $(SHELL) ./config.status
diff --git a/build/linux/acinclude.m4 b/build/linux/acinclude.m4
index 4ff9e4b..e4b6de7 100644
--- a/build/linux/acinclude.m4
+++ b/build/linux/acinclude.m4
@@ -60,10 +60,28 @@ AC_DEFUN([ASTRA_RUN_STOREOUTPUT],[{
test $ac_status = 0;
}])
-dnl ASTRA_RUN(command)
-AC_DEFUN([ASTRA_RUN],[ASTRA_RUN_STOREOUTPUT($1,/dev/null)])
+dnl ASTRA_RUN_LOGOUTPUT(command)
+AC_DEFUN([ASTRA_RUN_LOGOUTPUT],[{
+ AS_ECHO(["$as_me:${as_lineno-$LINENO}: $1"]) >&AS_MESSAGE_LOG_FD
+ ( $1 ) >&AS_MESSAGE_LOG_FD 2>&1
+ ac_status=$?
+ AS_ECHO(["$as_me:${as_lineno-$LINENO}: \$? = $ac_status"]) >&AS_MESSAGE_LOG_FD
+ test $ac_status = 0;
+ }])
+dnl ASTRA_TRY_PYTHON(code, action-if-ok, action-if-not-ok)
+AC_DEFUN([ASTRA_TRY_PYTHON],[
+cat >conftest.py <<_ACEOF
+$1
+_ACEOF
+ASTRA_RUN_LOGOUTPUT($PYTHON conftest.py)
+AS_IF([test $? = 0],[$2],[
+ AS_ECHO(["$as_me: failed program was:"]) >&AS_MESSAGE_LOG_FD
+ sed 's/^/| /' conftest.py >&AS_MESSAGE_LOG_FD
+ $3])
+])
+
dnl ASTRA_CHECK_NVCC(variable-to-set,cppflags-to-set)
AC_DEFUN([ASTRA_CHECK_NVCC],[
@@ -79,9 +97,9 @@ ASTRA_RUN_STOREOUTPUT([$NVCC -c -o conftest.o conftest.cu $$2],conftest.nvcc.out
$1="no"
# Check if hack for gcc 4.4 helps
if grep -q __builtin_stdarg_start conftest.nvcc.out; then
+ AS_ECHO(["$as_me:${as_lineno-$LINENO}: Trying CUDA hack for gcc 4.4"]) >&AS_MESSAGE_LOG_FD
NVCC_OPT="-Xcompiler -D__builtin_stdarg_start=__builtin_va_start"
-
- ASTRA_RUN([$NVCC -c -o conftest.o conftest.cu $$2 $NVCC_OPT]) && {
+ ASTRA_RUN_LOGOUTPUT([$NVCC -c -o conftest.o conftest.cu $$2 $NVCC_OPT]) && {
$1="yes"
$2="$$2 $NVCC_OPT"
}
@@ -94,6 +112,7 @@ fi
rm -f conftest.cu conftest.o conftest.nvcc.out
])
+
dnl ASTRA_FIND_NVCC_ARCHS(archs-to-try,cppflags-to-extend,output-list)
dnl Architectures should be of the form 10,20,30,35,
dnl and should be in order. The last accepted one will be used for PTX output.
diff --git a/build/linux/autogen.sh b/build/linux/autogen.sh
index c856793..544fdeb 100755
--- a/build/linux/autogen.sh
+++ b/build/linux/autogen.sh
@@ -12,9 +12,12 @@ if test $? -ne 0; then
exit 1
fi
-libtoolize --install --force > /dev/null 2>&1
+case `uname` in Darwin*) LIBTOOLIZEBIN=glibtoolize ;;
+ *) LIBTOOLIZEBIN=libtoolize ;; esac
+
+$LIBTOOLIZEBIN --install --force > /dev/null 2>&1
if test $? -ne 0; then
- libtoolize --force
+ $LIBTOOLIZEBIN --force
if test $? -ne 0; then
echo "Error running libtoolize"
exit 1
diff --git a/build/linux/configure.ac b/build/linux/configure.ac
index f99c4d3..d9e1f1a 100644
--- a/build/linux/configure.ac
+++ b/build/linux/configure.ac
@@ -1,26 +1,26 @@
dnl -----------------------------------------------------------------------
dnl Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
dnl 2014-2015, CWI, Amsterdam
-dnl
+dnl
dnl Contact: astra@uantwerpen.be
dnl Website: http://sf.net/projects/astra-toolbox
-dnl
+dnl
dnl This file is part of the ASTRA Toolbox.
-dnl
-dnl
+dnl
+dnl
dnl The ASTRA Toolbox is free software: you can redistribute it and/or modify
dnl it under the terms of the GNU General Public License as published by
dnl the Free Software Foundation, either version 3 of the License, or
dnl (at your option) any later version.
-dnl
+dnl
dnl The ASTRA Toolbox is distributed in the hope that it will be useful,
dnl but WITHOUT ANY WARRANTY; without even the implied warranty of
dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
dnl GNU General Public License for more details.
-dnl
+dnl
dnl You should have received a copy of the GNU General Public License
dnl along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
-dnl
+dnl
dnl -----------------------------------------------------------------------
dnl $Id$
@@ -31,6 +31,7 @@ LT_INIT([disable-static])
SAVED_CPPFLAGS="$CPPFLAGS"
SAVED_CXXFLAGS="$CXXFLAGS"
SAVED_LDFLAGS="$LDFLAGS"
+SAVED_LIBS="$LIBS"
AC_CANONICAL_BUILD
AC_CANONICAL_HOST
@@ -52,61 +53,70 @@ AC_CHECK_HEADER(iostream, , AC_MSG_ERROR([No working c++ compiler found]))
AC_MSG_CHECKING([for boost-unit-test-framework])
ASTRA_CHECK_BOOST_UNIT_TEST_FRAMEWORK(-lboost_unit_test_framework-mt, BOOSTUTF=yes_mt, BOOSTUTF=no)
+HAVEBOOSTUTF=no
if test x$BOOSTUTF = xno; then
ASTRA_CHECK_BOOST_UNIT_TEST_FRAMEWORK(-lboost_unit_test_framework, BOOSTUTF=yes, BOOSTUTF=no)
- if test x$BOOSTTHREAD = xno; then
+ if test x$BOOSTUTF = xno; then
AC_MSG_RESULT(no)
- AC_MSG_ERROR([No boost-unit-test-framework library found])
else
AC_MSG_RESULT([yes, libboost_unit_test_framework])
LIBS_BOOSTUTF="-lboost_unit_test_framework"
+ HAVEBOOSTUTF=yes
fi
else
AC_MSG_RESULT([yes, libboost_unit_test_framework-mt])
LIBS_BOOSTUTF="-lboost_unit_test_framework-mt"
+ HAVEBOOSTUTF=yes
fi
-# TODO: do something with the result
+AC_SUBST(HAVEBOOSTUTF)
+AC_SUBST(LIBS_BOOSTUTF)
+
+BOOSTok=yes
+AC_CHECK_HEADER([boost/lexical_cast.hpp],[],[BOOSTok=no],[])
+AC_CHECK_HEADER([boost/any.hpp],[],[BOOSTok=no],[])
+dnl AC_CHECK_HEADER([boost/thread.hpp],[],[BOOSTok=no],[])
+dnl AC_CHECK_HEADER([boost/bind.hpp],[],[BOOSTok=no],[])
+AC_CHECK_HEADER([boost/static_assert.hpp],[],[BOOSTok=no],[])
+AC_CHECK_HEADER([boost/throw_exception.hpp],[],[BOOSTok=no],[])
+
+if test x$BOOSTok = xno; then
+ AC_MSG_ERROR([boost not found])
+fi
# nvcc, cuda
AC_ARG_WITH(cuda, [[ --with-cuda=path path of CUDA SDK (optional)]],,)
-NVCC_PATH=$PATH
-if test x"$with_cuda" != x; then
- NVCC_PATH="$with_cuda/bin:$NVCC_PATH"
+if test x"$with_cuda" != xno; then
+ NVCC_PATH=$PATH
+ if test x"$with_cuda" != x -a x"$with_cuda" != xyes; then
+ NVCC_PATH="$with_cuda/bin:$NVCC_PATH"
+ fi
+ AC_PATH_PROG([NVCC], [nvcc], [no], [$NVCC_PATH])
+else
+ NVCC=no
fi
-AC_PATH_PROG([NVCC], [nvcc], [no], [$NVCC_PATH])
-# TODO: do something with the result
HAVECUDA=no
if test x"$NVCC" != xno; then
HAVECUDA=yes
BACKUP_CUDA_LDFLAGS="$LDFLAGS"
- if test x"$with_cuda" != x; then
- LDFLAGS_CUDA="-L$with_cuda/lib"
+ if test x"$with_cuda" != x -a x"$with_cuda" != xyes; then
+ case $host_cpu in
+ x86_64)
+ LDFLAGS_CUDA="-L$with_cuda/lib64"
+ ;;
+ *)
+ LDFLAGS_CUDA="-L$with_cuda/lib"
+ ;;
+ esac
CPPFLAGS_CUDA="-I$with_cuda/include"
LDFLAGS="$LDFLAGS $LDFLAGS_CUDA"
fi
AC_CHECK_LIB(cudart,cudaMalloc, ,HAVECUDA=no)
AC_CHECK_LIB(cufft,cufftPlan1d, ,HAVECUDA=no)
- if test x"$HAVECUDA" = xno; then
- # try lib64 instead of lib
-
- HAVECUDA=yes
- LDFLAGS="$BACKUP_CUDA_LDFLAGS"
-
- # prevent cached values from being used
- unset ac_cv_lib_cudart_cudaMalloc
- unset ac_cv_lib_cufft_cufftPlan1d
-
- LDFLAGS_CUDA="-L$with_cuda/lib64"
- LDFLAGS="$LDFLAGS $LDFLAGS_CUDA"
- AC_CHECK_LIB(cudart,cudaMalloc, ,HAVECUDA=no)
- AC_CHECK_LIB(cufft,cufftPlan1d, ,HAVECUDA=no)
- fi
-
LDFLAGS="$BACKUP_CUDA_LDFLAGS"
unset BACKUP_CUDA_LDFLAGS
# TODO: check for cuda headers?
@@ -115,11 +125,11 @@ if test x"$NVCC" != xno; then
fi
NVCCFLAGS=""
-AC_MSG_CHECKING([if nvcc works])
if test x"$HAVECUDA" = xyes; then
+ AC_MSG_CHECKING([if nvcc works])
ASTRA_CHECK_NVCC(HAVECUDA,NVCCFLAGS)
+ AC_MSG_RESULT($HAVECUDA)
fi
-AC_MSG_RESULT($HAVECUDA)
AC_ARG_WITH(cuda_compute, [[ --with-cuda-compute=archs comma separated list of CUDA compute models (optional)]],,)
if test x"$HAVECUDA" = xyes; then
@@ -154,7 +164,7 @@ if test x"$with_matlab" != x; then
AC_SUBST(MEX)
MATLAB_ROOT="$with_matlab"
AC_SUBST(MATLAB_ROOT)
-
+ # TODO: maybe catch mex warnings
ASTRA_CHECK_MEX_SUFFIX([mexa64 mexglx mexmaci64 mexmaci],[MEXSUFFIX])
if test x$MEXSUFFIX = x; then
AC_MSG_FAILURE([Unable to determine matlab mex suffix])
@@ -166,6 +176,67 @@ fi
AC_SUBST(HAVEMATLAB)
+# python
+
+AC_ARG_WITH(python, [[ --with-python=path path of Python binary (optional)]],,)
+
+HAVEPYTHON=no
+if test x"$with_python" != x -a x"$with_python" != xno; then
+ if test x"$with_python" = xyes; then
+ PYTHON=python
+ else
+ PYTHON="$with_python"
+ fi
+ AC_MSG_CHECKING(for python)
+ ASTRA_RUN_LOGOUTPUT(echo 'import sys' | $PYTHON -)
+ if test $? -ne 0; then
+ AC_MSG_ERROR(Python binary not found)]
+ fi
+ AC_MSG_RESULT([$PYTHON])
+ HAVEPYTHON=yes
+ AC_SUBST(PYTHON)
+ AC_MSG_CHECKING(for numpy module)
+ ASTRA_TRY_PYTHON([import numpy],,HAVEPYTHON=no)
+ if test x$HAVEPYTHON = xno; then
+ AC_MSG_RESULT(no)
+ AC_MSG_ERROR(You need the numpy module to use the ASTRA toolbox in Python)
+ fi
+ AC_MSG_RESULT(yes)
+ AC_MSG_CHECKING(for Cython module)
+ ASTRA_TRY_PYTHON([
+import Cython
+from distutils.version import LooseVersion
+assert(LooseVersion(Cython.__version__)>=LooseVersion("0.13"))
+],,HAVEPYTHON=no)
+ if test x$HAVEPYTHON = xno; then
+ AC_MSG_RESULT(no)
+ AC_MSG_ERROR(You need the Cython module (version >=0.13) to use the ASTRA toolbox in Python)
+ fi
+ AC_MSG_RESULT(yes)
+ AC_MSG_CHECKING(for six module)
+ ASTRA_TRY_PYTHON([import six])
+ if test x$HAVEPYTHON = xno; then
+ AC_MSG_RESULT(no)
+ AC_MSG_ERROR(You need the six module to use the ASTRA toolbox in Python)
+ fi
+ AC_MSG_RESULT(yes)
+fi
+
+AC_SUBST(HAVEPYTHON)
+
+#OS specific setup
+AC_CANONICAL_HOST
+case $host_os in
+ darwin* )
+ CPPFLAGS_OS="-stdlib=libstdc++ -mmacosx-version-min=10.6"
+ ;;
+ *)
+ CPPFLAGS_OS=""
+ ;;
+esac
+
+AC_SUBST(CPPFLAGS_OS)
+
# TODO:
@@ -179,7 +250,15 @@ AC_SUBST(HAVEMATLAB)
AC_SUBST(SAVED_CPPFLAGS)
AC_SUBST(SAVED_CXXFLAGS)
AC_SUBST(SAVED_LDFLAGS)
-
-
+AC_SUBST(SAVED_LIBS)
AC_CONFIG_FILES([Makefile])
AC_OUTPUT
+
+echo
+echo "Summary of ASTRA Toolbox build options:"
+echo " CUDA : $HAVECUDA"
+echo " Matlab : $HAVEMATLAB"
+echo " Python : $HAVEPYTHON"
+echo
+echo " prefix : $prefix"
+echo
diff --git a/build/msvc/gen.py b/build/msvc/gen.py
new file mode 100644
index 0000000..9f5e367
--- /dev/null
+++ b/build/msvc/gen.py
@@ -0,0 +1,1127 @@
+from __future__ import print_function
+import sys
+import os
+
+vcppguid = "8BC9CEB8-8B4A-11D0-8D11-00A0C91BC942" # C++ project
+siguid = "2150E333-8FDC-42A3-9474-1A3956D46DE8" # project group
+
+# to generate a new uuid:
+#
+# import uuid
+# uuid.uuid4().__str__().upper()
+
+def create_mex_project(name, uuid11, uuid09):
+ return { "type": vcppguid, "name": name, "file11": "matlab\\mex\\" + name + "_vc11.vcxproj", "file09": "matlab\\mex\\" + name + "_vc09.vcproj", "uuid11": uuid11, "uuid09": uuid09, "files": [] }
+
+P_astra = { "type": vcppguid, "name": "astra_vc11", "file11": "astra_vc11.vcxproj", "file09": "astra_vc09.vcproj", "uuid11": "BE9F1326-527C-4284-AE2C-D1E25D539CEA", "uuid09": "12926444-6723-46A8-B388-12E65E0577FA" }
+
+P0 = create_mex_project("astra_mex", "3FDA35E0-0D54-4663-A3E6-5ABA96F32221", "3FDA35E0-0D54-4663-A3E6-5ABA96F32221")
+
+P1 = create_mex_project("astra_mex_algorithm", "056BF7A9-294D-487C-8CC3-BE629077CA94", "056BF7A9-294D-487C-8CC3-BE629077CA94")
+P2 = create_mex_project("astra_mex_data2d", "E4092269-B19C-46F7-A84E-4F146CC70E44", "E4092269-B19C-46F7-A84E-4F146CC70E44")
+P3 = create_mex_project("astra_mex_data3d", "0BEC029B-0929-4BF9-BD8B-9C9806A52065", "0BEC029B-0929-4BF9-BD8B-9C9806A52065")
+P4 = create_mex_project("astra_mex_matrix", "9D041710-2119-4230-BCF2-5FBE753FDE49", "9D041710-2119-4230-BCF2-5FBE753FDE49")
+P5 = create_mex_project("astra_mex_projector", "4DD6056F-8EEE-4C9A-B2A9-923F01A32E97", "4DD6056F-8EEE-4C9A-B2A9-923F01A32E97")
+P6 = create_mex_project("astra_mex_projector3d", "F94CCD79-AA11-42DF-AC8A-6C9D2238A883", "F94CCD79-AA11-42DF-AC8A-6C9D2238A883")
+P7 = create_mex_project("astra_mex_log", "03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E", "CA2840B3-DA68-41B5-AC57-F5DFD20ED8F8")
+
+F_astra_mex = { "type": siguid,
+ "name": "astra_mex",
+ "file11": "astra_mex",
+ "file09": "astra_mex",
+ "uuid11": "5E99A109-374E-4102-BE9B-99BA1FA8AA30",
+ "uuid09": "33EF0AC5-B475-40BF-BAE5-67075B204D10",
+ "entries": [ P0, P1, P2, P3, P4, P5, P6, P7 ] }
+
+
+P0["files"] = [
+"astra_mex_c.cpp",
+"mexHelpFunctions.cpp",
+"mexHelpFunctions.h",
+"mexInitFunctions.cpp",
+"mexInitFunctions.h",
+]
+P1["files"] = [
+"astra_mex_algorithm_c.cpp",
+"mexHelpFunctions.cpp",
+"mexHelpFunctions.h",
+"mexInitFunctions.cpp",
+"mexInitFunctions.h",
+]
+P2["files"] = [
+"astra_mex_data2d_c.cpp",
+"mexHelpFunctions.cpp",
+"mexHelpFunctions.h",
+"mexCopyDataHelpFunctions.cpp",
+"mexCopyDataHelpFunctions.h",
+"mexDataManagerHelpFunctions.cpp",
+"mexDataManagerHelpFunctions.h",
+"mexInitFunctions.cpp",
+"mexInitFunctions.h",
+]
+P3["files"] = [
+"astra_mex_data3d_c.cpp",
+"mexHelpFunctions.cpp",
+"mexHelpFunctions.h",
+"mexCopyDataHelpFunctions.cpp",
+"mexCopyDataHelpFunctions.h",
+"mexDataManagerHelpFunctions.cpp",
+"mexDataManagerHelpFunctions.h",
+"mexInitFunctions.cpp",
+"mexInitFunctions.h",
+]
+P4["files"] = [
+"astra_mex_matrix_c.cpp",
+"mexHelpFunctions.cpp",
+"mexHelpFunctions.h",
+"mexInitFunctions.cpp",
+"mexInitFunctions.h",
+]
+P5["files"] = [
+"astra_mex_projector_c.cpp",
+"mexHelpFunctions.cpp",
+"mexHelpFunctions.h",
+"mexInitFunctions.cpp",
+"mexInitFunctions.h",
+]
+P6["files"] = [
+"astra_mex_projector3d_c.cpp",
+"mexHelpFunctions.cpp",
+"mexHelpFunctions.h",
+"mexInitFunctions.cpp",
+"mexInitFunctions.h",
+]
+P7["files"] = [
+"astra_mex_log_c.cpp",
+"mexHelpFunctions.cpp",
+"mexHelpFunctions.h",
+"mexInitFunctions.cpp",
+"mexInitFunctions.h",
+]
+
+
+
+P_astra["filter_names"] = [
+"Algorithms",
+"Data Structures",
+"Projectors",
+"CUDA",
+"Global &amp; Other",
+"Geometries",
+"Algorithms\\headers",
+"Algorithms\\source",
+"Data Structures\\headers",
+"Data Structures\\source",
+"Global &amp; Other\\headers",
+"Global &amp; Other\\source",
+"Geometries\\headers",
+"Geometries\\source",
+"Projectors\\headers",
+"Projectors\\inline",
+"Projectors\\source",
+"CUDA\\astra headers",
+"CUDA\\astra source",
+"CUDA\\cuda headers",
+"CUDA\\cuda source",
+]
+P_astra["filters"] = {}
+P_astra["filters"]["Algorithms"] = [ "262b0d17-774a-4cb1-b51a-b358d2d02791" ]
+P_astra["filters"]["Data Structures"] = [ "76d6d672-670b-4454-b3ab-10dc8f9b8710" ]
+P_astra["filters"]["Projectors"] = [ "77a581a9-60da-4265-97c0-80cdf97408c0" ]
+P_astra["filters"]["CUDA"] = [ "c1af0e56-5fcc-4e75-b5db-88eeb4148185" ]
+P_astra["filters"]["Global &amp; Other"] = [ "72fbe846-10ef-4c52-88df-13bd66c4cbfc" ]
+P_astra["filters"]["Geometries"] = [ "7ef37c12-c98c-4dd6-938d-12f49279eae0" ]
+P_astra["filters"]["CUDA\\cuda source"] = [
+"04a878ed-77b4-4525-9bc2-38ccd65282c5",
+"cuda\\2d\\algo.cu",
+"cuda\\2d\\arith.cu",
+"cuda\\2d\\astra.cu",
+"cuda\\2d\\cgls.cu",
+"cuda\\2d\\darthelper.cu",
+"cuda\\2d\\em.cu",
+"cuda\\2d\\fan_bp.cu",
+"cuda\\2d\\fan_fp.cu",
+"cuda\\2d\\fft.cu",
+"cuda\\2d\\par_bp.cu",
+"cuda\\2d\\par_fp.cu",
+"cuda\\2d\\sart.cu",
+"cuda\\2d\\sirt.cu",
+"cuda\\2d\\util.cu",
+"cuda\\3d\\algo3d.cu",
+"cuda\\3d\\arith3d.cu",
+"cuda\\3d\\astra3d.cu",
+"cuda\\3d\\cgls3d.cu",
+"cuda\\3d\\cone_bp.cu",
+"cuda\\3d\\cone_fp.cu",
+"cuda\\3d\\darthelper3d.cu",
+"cuda\\3d\\fdk.cu",
+"cuda\\3d\\par3d_bp.cu",
+"cuda\\3d\\par3d_fp.cu",
+"cuda\\3d\\sirt3d.cu",
+"cuda\\3d\\util3d.cu",
+]
+P_astra["filters"]["Algorithms\\source"] = [
+"9df653ab-26c3-4bec-92a2-3dda22fda761",
+"src\\Algorithm.cpp",
+"src\\ArtAlgorithm.cpp",
+"src\\AsyncAlgorithm.cpp",
+"src\\BackProjectionAlgorithm.cpp",
+"src\\CglsAlgorithm.cpp",
+"src\\FilteredBackProjectionAlgorithm.cpp",
+"src\\ForwardProjectionAlgorithm.cpp",
+"src\\ReconstructionAlgorithm2D.cpp",
+"src\\ReconstructionAlgorithm3D.cpp",
+"src\\SartAlgorithm.cpp",
+"src\\SirtAlgorithm.cpp",
+]
+P_astra["filters"]["Data Structures\\source"] = [
+"95346487-8185-487b-a794-3e7fb5fcbd4c",
+"src\\Float32Data.cpp",
+"src\\Float32Data2D.cpp",
+"src\\Float32Data3D.cpp",
+"src\\Float32Data3DMemory.cpp",
+"src\\Float32ProjectionData2D.cpp",
+"src\\Float32ProjectionData3D.cpp",
+"src\\Float32ProjectionData3DMemory.cpp",
+"src\\Float32VolumeData2D.cpp",
+"src\\Float32VolumeData3D.cpp",
+"src\\Float32VolumeData3DMemory.cpp",
+"src\\SparseMatrix.cpp",
+]
+P_astra["filters"]["Global &amp; Other\\source"] = [
+"1546cb47-7e5b-42c2-b695-ef172024c14b",
+"src\\AstraObjectFactory.cpp",
+"src\\AstraObjectManager.cpp",
+"src\\Config.cpp",
+"src\\Fourier.cpp",
+"src\\Globals.cpp",
+"src\\Logging.cpp",
+"src\\PlatformDepSystemCode.cpp",
+"src\\Utilities.cpp",
+"src\\XMLDocument.cpp",
+"src\\XMLNode.cpp",
+]
+P_astra["filters"]["Geometries\\source"] = [
+"dc27bff7-4256-4311-a131-47612a44af20",
+"src\\ConeProjectionGeometry3D.cpp",
+"src\\ConeVecProjectionGeometry3D.cpp",
+"src\\FanFlatProjectionGeometry2D.cpp",
+"src\\FanFlatVecProjectionGeometry2D.cpp",
+"src\\GeometryUtil3D.cpp",
+"src\\ParallelProjectionGeometry2D.cpp",
+"src\\ParallelProjectionGeometry3D.cpp",
+"src\\ParallelVecProjectionGeometry3D.cpp",
+"src\\ProjectionGeometry2D.cpp",
+"src\\ProjectionGeometry3D.cpp",
+"src\\SparseMatrixProjectionGeometry2D.cpp",
+"src\\VolumeGeometry2D.cpp",
+"src\\VolumeGeometry3D.cpp",
+]
+P_astra["filters"]["Projectors\\source"] = [
+"2d60e3c8-7874-4cee-b139-991ac15e811d",
+"src\\DataProjector.cpp",
+"src\\DataProjectorPolicies.cpp",
+"src\\FanFlatBeamLineKernelProjector2D.cpp",
+"src\\FanFlatBeamStripKernelProjector2D.cpp",
+"src\\ParallelBeamBlobKernelProjector2D.cpp",
+"src\\ParallelBeamLinearKernelProjector2D.cpp",
+"src\\ParallelBeamLineKernelProjector2D.cpp",
+"src\\ParallelBeamStripKernelProjector2D.cpp",
+"src\\Projector2D.cpp",
+"src\\Projector3D.cpp",
+"src\\SparseMatrixProjector2D.cpp",
+]
+P_astra["filters"]["CUDA\\astra source"] = [
+"bbef012e-598a-456f-90d8-416bdcb4221c",
+"src\\CudaBackProjectionAlgorithm.cpp",
+"src\\CudaBackProjectionAlgorithm3D.cpp",
+"src\\CudaCglsAlgorithm.cpp",
+"src\\CudaCglsAlgorithm3D.cpp",
+"src\\CudaDartMaskAlgorithm.cpp",
+"src\\CudaDartMaskAlgorithm3D.cpp",
+"src\\CudaDartSmoothingAlgorithm.cpp",
+"src\\CudaDartSmoothingAlgorithm3D.cpp",
+"src\\CudaDataOperationAlgorithm.cpp",
+"src\\CudaEMAlgorithm.cpp",
+"src\\CudaFDKAlgorithm3D.cpp",
+"src\\CudaFilteredBackProjectionAlgorithm.cpp",
+"src\\CudaForwardProjectionAlgorithm.cpp",
+"src\\CudaForwardProjectionAlgorithm3D.cpp",
+"src\\CudaProjector2D.cpp",
+"src\\CudaProjector3D.cpp",
+"src\\CudaReconstructionAlgorithm2D.cpp",
+"src\\CudaRoiSelectAlgorithm.cpp",
+"src\\CudaSartAlgorithm.cpp",
+"src\\CudaSirtAlgorithm.cpp",
+"src\\CudaSirtAlgorithm3D.cpp",
+]
+P_astra["filters"]["CUDA\\cuda headers"] = [
+"4e17872e-db7d-41bc-9760-fad1c253b583",
+"cuda\\2d\\algo.h",
+"cuda\\2d\\arith.h",
+"cuda\\2d\\astra.h",
+"cuda\\2d\\cgls.h",
+"cuda\\2d\\darthelper.h",
+"cuda\\2d\\dims.h",
+"cuda\\2d\\em.h",
+"cuda\\2d\\fan_bp.h",
+"cuda\\2d\\fan_fp.h",
+"cuda\\2d\\fbp_filters.h",
+"cuda\\2d\\fft.h",
+"cuda\\2d\\par_bp.h",
+"cuda\\2d\\par_fp.h",
+"cuda\\2d\\sart.h",
+"cuda\\2d\\sirt.h",
+"cuda\\2d\\util.h",
+"cuda\\3d\\algo3d.h",
+"cuda\\3d\\arith3d.h",
+"cuda\\3d\\astra3d.h",
+"cuda\\3d\\cgls3d.h",
+"cuda\\3d\\cone_bp.h",
+"cuda\\3d\\cone_fp.h",
+"cuda\\3d\\darthelper3d.h",
+"cuda\\3d\\dims3d.h",
+"cuda\\3d\\fdk.h",
+"cuda\\3d\\par3d_bp.h",
+"cuda\\3d\\par3d_fp.h",
+"cuda\\3d\\sirt3d.h",
+"cuda\\3d\\util3d.h",
+]
+P_astra["filters"]["Algorithms\\headers"] = [
+"a76ffd6d-3895-4365-b27e-fc9a72f2ed75",
+"include\\astra\\Algorithm.h",
+"include\\astra\\AlgorithmTypelist.h",
+"include\\astra\\ArtAlgorithm.h",
+"include\\astra\\AsyncAlgorithm.h",
+"include\\astra\\BackProjectionAlgorithm.h",
+"include\\astra\\CglsAlgorithm.h",
+"include\\astra\\CudaBackProjectionAlgorithm.h",
+"include\\astra\\CudaBackProjectionAlgorithm3D.h",
+"include\\astra\\FilteredBackProjectionAlgorithm.h",
+"include\\astra\\ForwardProjectionAlgorithm.h",
+"include\\astra\\ReconstructionAlgorithm2D.h",
+"include\\astra\\ReconstructionAlgorithm3D.h",
+"include\\astra\\SartAlgorithm.h",
+"include\\astra\\SirtAlgorithm.h",
+]
+P_astra["filters"]["Data Structures\\headers"] = [
+"444c44b0-6454-483a-be26-7cb9c8ab0b98",
+"include\\astra\\Float32Data.h",
+"include\\astra\\Float32Data2D.h",
+"include\\astra\\Float32Data3D.h",
+"include\\astra\\Float32Data3DMemory.h",
+"include\\astra\\Float32ProjectionData2D.h",
+"include\\astra\\Float32ProjectionData3D.h",
+"include\\astra\\Float32ProjectionData3DMemory.h",
+"include\\astra\\Float32VolumeData2D.h",
+"include\\astra\\Float32VolumeData3D.h",
+"include\\astra\\Float32VolumeData3DMemory.h",
+"include\\astra\\SparseMatrix.h",
+]
+P_astra["filters"]["Global &amp; Other\\headers"] = [
+"1c52efc8-a77e-4c72-b9be-f6429a87e6d7",
+"include\\astra\\AstraObjectFactory.h",
+"include\\astra\\AstraObjectManager.h",
+"include\\astra\\clog.h",
+"include\\astra\\Config.h",
+"include\\astra\\Fourier.h",
+"include\\astra\\Globals.h",
+"include\\astra\\Logging.h",
+"include\\astra\\PlatformDepSystemCode.h",
+"include\\astra\\Singleton.h",
+"include\\astra\\TypeList.h",
+"include\\astra\\Utilities.h",
+"include\\astra\\Vector3D.h",
+"include\\astra\\XMLDocument.h",
+"include\\astra\\XMLNode.h",
+]
+P_astra["filters"]["Geometries\\headers"] = [
+"eddb31ba-0db7-4ab1-a490-36623aaf8901",
+"include\\astra\\ConeProjectionGeometry3D.h",
+"include\\astra\\ConeVecProjectionGeometry3D.h",
+"include\\astra\\FanFlatProjectionGeometry2D.h",
+"include\\astra\\FanFlatVecProjectionGeometry2D.h",
+"include\\astra\\GeometryUtil2D.h",
+"include\\astra\\GeometryUtil3D.h",
+"include\\astra\\ParallelProjectionGeometry2D.h",
+"include\\astra\\ParallelProjectionGeometry3D.h",
+"include\\astra\\ParallelVecProjectionGeometry3D.h",
+"include\\astra\\ProjectionGeometry2D.h",
+"include\\astra\\ProjectionGeometry3D.h",
+"include\\astra\\SparseMatrixProjectionGeometry2D.h",
+"include\\astra\\VolumeGeometry2D.h",
+"include\\astra\\VolumeGeometry3D.h",
+]
+P_astra["filters"]["Projectors\\headers"] = [
+"91ae2cfd-6b45-46eb-ad99-2f16e5ce4b1e",
+"include\\astra\\DataProjector.h",
+"include\\astra\\DataProjectorPolicies.h",
+"include\\astra\\FanFlatBeamLineKernelProjector2D.h",
+"include\\astra\\FanFlatBeamStripKernelProjector2D.h",
+"include\\astra\\ParallelBeamBlobKernelProjector2D.h",
+"include\\astra\\ParallelBeamLinearKernelProjector2D.h",
+"include\\astra\\ParallelBeamLineKernelProjector2D.h",
+"include\\astra\\ParallelBeamStripKernelProjector2D.h",
+"include\\astra\\Projector2D.h",
+"include\\astra\\Projector3D.h",
+"include\\astra\\ProjectorTypelist.h",
+"include\\astra\\SparseMatrixProjector2D.h",
+]
+P_astra["filters"]["CUDA\\astra headers"] = [
+"bd4e1f94-2f56-4db6-b946-20c29d65a351",
+"include\\astra\\CudaCglsAlgorithm.h",
+"include\\astra\\CudaCglsAlgorithm3D.h",
+"include\\astra\\CudaDartMaskAlgorithm.h",
+"include\\astra\\CudaDartMaskAlgorithm3D.h",
+"include\\astra\\CudaDartSmoothingAlgorithm.h",
+"include\\astra\\CudaDartSmoothingAlgorithm3D.h",
+"include\\astra\\CudaDataOperationAlgorithm.h",
+"include\\astra\\CudaEMAlgorithm.h",
+"include\\astra\\CudaFDKAlgorithm3D.h",
+"include\\astra\\CudaFilteredBackProjectionAlgorithm.h",
+"include\\astra\\CudaForwardProjectionAlgorithm.h",
+"include\\astra\\CudaForwardProjectionAlgorithm3D.h",
+"include\\astra\\CudaProjector2D.h",
+"include\\astra\\CudaProjector3D.h",
+"include\\astra\\CudaReconstructionAlgorithm2D.h",
+"include\\astra\\CudaRoiSelectAlgorithm.h",
+"include\\astra\\CudaSartAlgorithm.h",
+"include\\astra\\CudaSirtAlgorithm.h",
+"include\\astra\\CudaSirtAlgorithm3D.h",
+
+]
+P_astra["filters"]["Projectors\\inline"] = [
+"0daffd63-ba49-4a5f-8d7a-5322e0e74f22",
+"include\\astra\\DataProjectorPolicies.inl",
+"include\\astra\\FanFlatBeamLineKernelProjector2D.inl",
+"include\\astra\\FanFlatBeamStripKernelProjector2D.inl",
+"include\\astra\\ParallelBeamBlobKernelProjector2D.inl",
+"include\\astra\\ParallelBeamLinearKernelProjector2D.inl",
+"include\\astra\\ParallelBeamLineKernelProjector2D.inl",
+"include\\astra\\ParallelBeamStripKernelProjector2D.inl",
+"include\\astra\\SparseMatrixProjector2D.inl",
+]
+
+P_astra["files"] = []
+for f in P_astra["filters"]:
+ P_astra["files"].extend(P_astra["filters"][f][1:])
+P_astra["files"].sort()
+
+projects = [ P_astra, F_astra_mex, P0, P1, P2, P3, P4, P5, P6, P7 ]
+
+bom = "\xef\xbb\xbf"
+
+class Configuration:
+ def __init__(self, debug, cuda, x64):
+ self.debug = debug
+ self.cuda = cuda
+ self.x64 = x64
+ def type(self):
+ if self.debug:
+ return "Debug"
+ else:
+ return "Release"
+ def config(self):
+ n = self.type()
+ if self.cuda:
+ n += "_CUDA"
+ return n
+ def platform(self):
+ if self.x64:
+ n = "x64"
+ else:
+ n = "Win32"
+ return n
+ def name(self):
+ n = self.config()
+ n += "|"
+ n += self.platform()
+ return n
+ def target(self):
+ n = "Astra"
+ if self.cuda:
+ n += "Cuda"
+ if self.x64:
+ n += "64"
+ else:
+ n += "32"
+ if self.debug:
+ n += "D"
+ return n
+
+
+
+configs = [ Configuration(a,b,c) for a in [ True, False ] for b in [ True, False ] for c in [ False, True ] ]
+
+def write_sln(version):
+ main_project = P_astra
+ if version == 9:
+ F = open("astra_vc09.sln", "w")
+ elif version == 11:
+ F = open("astra_vc11.sln", "w")
+ else:
+ assert(False)
+ print(bom, file=F)
+ if version == 9:
+ print("Microsoft Visual Studio Solution File, Format Version 10.00", file=F)
+ print("# Visual Studio 2008", file=F)
+ uuid = "uuid09"
+ file_ = "file09"
+ elif version == 11:
+ print("Microsoft Visual Studio Solution File, Format Version 12.00", file=F)
+ print("# Visual Studio 2012", file=F)
+ uuid = "uuid11"
+ file_ = "file11"
+ for p in projects:
+ s = '''Project("{%s}") = "%s", "%s", "{%s}"''' % (p["type"], p["name"], p[file_], p[uuid])
+ print(s, file=F)
+ if "mex" in p["name"]:
+ print("\tProjectSection(ProjectDependencies) = postProject", file=F)
+ print("\t\t{%s} = {%s}" % (main_project[uuid], main_project[uuid]), file=F)
+ print("\tEndProjectSection", file=F)
+ print("EndProject", file=F)
+ print("Global", file=F)
+ print("\tGlobalSection(SolutionConfigurationPlatforms) = preSolution", file=F)
+ for c in configs:
+ print("\t\t" + c.name() + " = " + c.name(), file=F)
+ print("\tEndGlobalSection", file=F)
+ print("\tGlobalSection(ProjectConfigurationPlatforms) = postSolution", file=F)
+ for p in projects:
+ if "entries" in p:
+ continue
+ for c in configs:
+ print("\t\t{" + p[uuid] + "}." + c.name() + ".ActiveCfg = " + c.name(), file=F)
+ print("\t\t{" + p[uuid] + "}." + c.name() + ".Build.0 = " + c.name(), file=F)
+ print("\tEndGlobalSection", file=F)
+ print("\tGlobalSection(SolutionProperties) = preSolution", file=F)
+ print("\t\tHideSolutionNode = FALSE", file=F)
+ print("\tEndGlobalSection", file=F)
+ print("\tGlobalSection(NestedProjects) = preSolution", file=F)
+ for p in projects:
+ if "entries" not in p:
+ continue
+ for e in p["entries"]:
+ print("\t\t{" + e[uuid] + "} = {" + p[uuid] + "}", file=F)
+ print("\tEndGlobalSection", file=F)
+ print("EndGlobal", file=F)
+ F.close()
+
+def write_project11_start(P, F):
+ print(bom + '<?xml version="1.0" encoding="utf-8"?>', file=F)
+ print('<Project DefaultTargets="Build" ToolsVersion="4.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">', file=F)
+ print(' <ItemGroup Label="ProjectConfigurations">', file=F)
+ for c in configs:
+ print(' <ProjectConfiguration Include="' + c.name() + '">', file=F)
+ print(' <Configuration>' + c.config() + '</Configuration>', file=F)
+ print(' <Platform>' + c.platform() + '</Platform>', file=F)
+ print(' </ProjectConfiguration>', file=F)
+ print(' </ItemGroup>', file=F)
+ print(' <PropertyGroup Label="Globals">', file=F)
+ if 'mex' in P["name"]:
+ print(' <ProjectName>' + P["name"] + '</ProjectName>', file=F)
+ print(' <ProjectGuid>{' + P["uuid11"] + '}</ProjectGuid>', file=F)
+ if 'mex' in P["name"]:
+ print(' <RootNamespace>astraMatlab</RootNamespace>', file=F)
+ else:
+ print(' <RootNamespace>' + P["name"] + '</RootNamespace>', file=F)
+ print(' </PropertyGroup>', file=F)
+ print(' <Import Project="$(VCTargetsPath)\Microsoft.Cpp.Default.props" />', file=F)
+ for c in configs:
+ print(''' <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='%s'" Label="Configuration">''' % (c.name(), ), file=F)
+ print(' <ConfigurationType>DynamicLibrary</ConfigurationType>', file=F)
+ if 'mex' not in P["name"]:
+ if c.debug:
+ print(' <UseDebugLibraries>true</UseDebugLibraries>', file=F)
+ else:
+ print(' <UseDebugLibraries>false</UseDebugLibraries>', file=F)
+ print(' <PlatformToolset>v110</PlatformToolset>', file=F)
+ if 'mex' not in P["name"]:
+ if not c.debug:
+ print(' <WholeProgramOptimization>true</WholeProgramOptimization>', file=F)
+ print(' <CharacterSet>MultiByte</CharacterSet>', file=F)
+ print(' </PropertyGroup>', file=F)
+ print(' <Import Project="$(VCTargetsPath)\Microsoft.Cpp.props" />', file=F)
+ print(' <ImportGroup Label="ExtensionSettings">', file=F)
+ if "mex" not in P["name"]:
+ print(' <Import Project="$(VCTargetsPath)\BuildCustomizations\CUDA 5.5.props" />', file=F)
+ print(' </ImportGroup>', file=F)
+ for c in configs:
+ print(''' <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='%s'">''' % (c.name(), ), file=F)
+ print(''' <Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />''', file=F)
+ print(''' </ImportGroup>''', file=F)
+ print(' <PropertyGroup Label="UserMacros" />', file=F)
+
+def write_project11_end(P, F):
+ l = [ f for f in P["files"] if len(f) > 4 and f[-4:] == ".cpp" ]
+ if l:
+ print(' <ItemGroup>', file=F)
+ for f in l:
+ if ("cuda" in f) or ("Cuda" in f):
+ print(' <ClCompile Include="' + f + '">', file=F)
+ for c in configs:
+ if not c.cuda:
+ print(''' <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='%s'">true</ExcludedFromBuild>''' % (c.name(), ), file=F)
+ print(' </ClCompile>', file=F)
+ else:
+ print(' <ClCompile Include="' + f + '" />', file=F)
+ print(' </ItemGroup>', file=F)
+ l = [ f for f in P["files"] if len(f) > 2 and f[-2:] == ".h" ]
+ if l:
+ print(' <ItemGroup>', file=F)
+ for f in l:
+ print(' <ClInclude Include="' + f + '" />', file=F)
+ print(' </ItemGroup>', file=F)
+ l = [ f for f in P["files"] if len(f) > 3 and f[-3:] == ".cu" ]
+ if l:
+ print(' <ItemGroup>', file=F)
+ for f in l:
+ print(' <CudaCompile Include="' + f + '">', file=F)
+ for c in configs:
+ if not c.cuda:
+ print(''' <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='%s'">true</ExcludedFromBuild>''' % (c.name(), ), file=F)
+ print(' </CudaCompile>', file=F)
+ print(' </ItemGroup>', file=F)
+ l = [ f for f in P["files"] if len(f) > 4 and f[-4:] == ".inl" ]
+ if l:
+ print(' <ItemGroup>', file=F)
+ for f in l:
+ print(' <None Include="' + f + '" />', file=F)
+ print(' </ItemGroup>', file=F)
+ print(' <Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />', file=F)
+ print(' <ImportGroup Label="ExtensionTargets">', file=F)
+ if "mex" not in P["name"]:
+ print(' <Import Project="$(VCTargetsPath)\BuildCustomizations\CUDA 5.5.targets" />', file=F)
+ print(' </ImportGroup>', file=F)
+ print('</Project>', end="", file=F)
+
+
+def write_main_project11():
+ P = P_astra;
+ F = open(P["file11"], "w")
+ write_project11_start(P, F)
+ for c in configs:
+ print(''' <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='%s'">''' % (c.name(), ), file=F)
+ if c.cuda:
+ print(' <IncludePath>$(CUDA_INC_PATH);$(IncludePath)</IncludePath>', file=F)
+ print(' <LibraryPath>$(CUDA_LIB_PATH);$(LibraryPath)</LibraryPath>', file=F)
+ print(' <OutDir>$(SolutionDir)bin\\$(Platform)\\' + c.config() + '\\</OutDir>', file=F)
+ print(' <IntDir>$(OutDir)obj\\</IntDir>', file=F)
+ print(' <TargetExt>.dll</TargetExt>', file=F)
+ print(' <TargetName>' + c.target() + '</TargetName>', file=F)
+ print(' <GenerateManifest>true</GenerateManifest>', file=F)
+ print(' </PropertyGroup>', file=F)
+ for c in configs:
+ print(''' <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='%s'">''' % (c.name(), ), file=F)
+ print(' <ClCompile>', file=F)
+ if c.debug:
+ print(' <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>', file=F)
+ else:
+ print(' <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>', file=F)
+ print(' <WarningLevel>Level3</WarningLevel>', file=F)
+ print(' <AdditionalIncludeDirectories>lib\include;include\;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>', file=F)
+ print(' <OpenMPSupport>true</OpenMPSupport>', file=F)
+ if not c.x64: # /arch:SSE2 is implicit on x64
+ print(' <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>', file=F)
+ if c.debug:
+ print(' <Optimization>Disabled</Optimization>', file=F)
+ else:
+ print(' <Optimization>MaxSpeed</Optimization>', file=F)
+ print(' <FunctionLevelLinking>true</FunctionLevelLinking>', file=F)
+ print(' <IntrinsicFunctions>true</IntrinsicFunctions>', file=F)
+ print(' <InlineFunctionExpansion>AnySuitable</InlineFunctionExpansion>', file=F)
+ print(' <FavorSizeOrSpeed>Speed</FavorSizeOrSpeed>', file=F)
+ d=' <PreprocessorDefinitions>'
+ if c.cuda:
+ d+="ASTRA_CUDA;"
+ d+="__SSE2__;"
+ d+="DLL_EXPORTS;_CRT_SECURE_NO_WARNINGS;"
+ d+='%(PreprocessorDefinitions)</PreprocessorDefinitions>'
+ print(d, file=F)
+ print(' <MultiProcessorCompilation>true</MultiProcessorCompilation>', file=F)
+ print(' <SDLCheck>true</SDLCheck>', file=F)
+ print(' </ClCompile>', file=F)
+ print(' <Link>', file=F)
+ print(' <GenerateDebugInformation>true</GenerateDebugInformation>', file=F)
+ if not c.debug:
+ print(' <EnableCOMDATFolding>true</EnableCOMDATFolding>', file=F)
+ print(' <OptimizeReferences>true</OptimizeReferences>', file=F)
+ print(' <OutputFile>bin\\' + c.platform() + '\\' + c.config() + '\\' + c.target() + '.dll</OutputFile>', file=F)
+ if c.cuda:
+ print(' <AdditionalDependencies>cudart.lib;cufft.lib;%(AdditionalDependencies)</AdditionalDependencies>', file=F)
+ l = ' <AdditionalLibraryDirectories>';
+ if c.x64:
+ l += 'lib\\x64'
+ else:
+ l += 'lib\\win32'
+ l += ';%(AdditionalLibraryDirectories)'
+ if c.cuda:
+ l += ';$(CudaToolkitLibDir)'
+ l += '</AdditionalLibraryDirectories>'
+ print(l, file=F)
+ print(' </Link>', file=F)
+ if c.cuda:
+ print(' <CudaCompile>', file=F)
+ if c.x64:
+ print(' <TargetMachinePlatform>64</TargetMachinePlatform>', file=F)
+ else:
+ print(' <TargetMachinePlatform>32</TargetMachinePlatform>', file=F)
+ print(' <GenerateLineInfo>true</GenerateLineInfo>', file=F)
+ print(' <CodeGeneration>compute_20,sm_20;compute_30,sm_30;compute_30,sm_35;compute_30,compute_30</CodeGeneration>', file=F)
+ print(' </CudaCompile>', file=F)
+ print(' </ItemDefinitionGroup>', file=F)
+ write_project11_end(P, F)
+ F.close()
+
+def write_mex_project11(P):
+ F = open("matlab/mex/" + P["name"] + "_vc11.vcxproj", "w")
+ write_project11_start(P, F)
+ print(' <PropertyGroup>', file=F)
+ print(' <_ProjectFileVersion>11.0.60610.1</_ProjectFileVersion>', file=F)
+ print(' </PropertyGroup>', file=F)
+ for c in configs:
+ print(''' <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='%s'">''' % (c.name(), ), file=F)
+ print(' <OutDir>$(SolutionDir)bin\\$(Platform)\\$(Configuration)\\</OutDir>', file=F)
+ print(' <IntDir>$(OutDir)obj\\$(ProjectName)\\</IntDir>', file=F)
+ print(' <TargetName>$(ProjectName)_c</TargetName>', file=F)
+ if c.x64:
+ print(' <TargetExt>.mexw64</TargetExt>', file=F)
+ else:
+ print(' <TargetExt>.mexw32</TargetExt>', file=F)
+ print(' </PropertyGroup>', file=F)
+ for c in configs:
+ print(''' <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='%s'">''' % (c.name(), ), file=F)
+ print(' <ClCompile>', file=F)
+ if c.debug:
+ print(' <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>', file=F)
+ else:
+ print(' <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>', file=F)
+# print(' <WarningLevel>Level3</WarningLevel>', file=F)
+ #print(' <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>', file=F)
+ # FIXME: This CUDA_PATH shouldn't be necessary
+ print(' <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>', file=F)
+ print(' <OpenMPSupport>true</OpenMPSupport>', file=F)
+ if not c.x64: # /arch:SSE2 is implicit on x64
+ print(' <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>', file=F)
+ if c.debug:
+ print(' <Optimization>Disabled</Optimization>', file=F)
+ else:
+ print(' <Optimization>MaxSpeed</Optimization>', file=F)
+# print(' <FunctionLevelLinking>true</FunctionLevelLinking>', file=F)
+# print(' <IntrinsicFunctions>true</IntrinsicFunctions>', file=F)
+# print(' <InlineFunctionExpansion>AnySuitable</InlineFunctionExpansion>', file=F)
+# print(' <FavorSizeOrSpeed>Speed</FavorSizeOrSpeed>', file=F)
+ d=' <PreprocessorDefinitions>'
+ if c.cuda:
+ d+="ASTRA_CUDA;"
+ d+="__SSE2__;"
+# d+="DLL_EXPORTS;_CRT_SECURE_NO_WARNINGS;"
+ d+='%(PreprocessorDefinitions)</PreprocessorDefinitions>'
+ print(d, file=F)
+ print(' <MultiProcessorCompilation>true</MultiProcessorCompilation>', file=F)
+# print(' <SDLCheck>true</SDLCheck>', file=F)
+# if c.debug:
+# <DebugInformationFormat>EditAndContinue</DebugInformationFormat> ??
+ print(' </ClCompile>', file=F)
+ print(' <Link>', file=F)
+# if not c.debug:
+# print(' <EnableCOMDATFolding>true</EnableCOMDATFolding>', file=F)
+# print(' <OptimizeReferences>true</OptimizeReferences>', file=F)
+ if c.x64:
+ print(' <OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>', file=F)
+ else:
+ print(' <OutputFile>$(OutDir)$(ProjectName)_c.mexw32</OutputFile>', file=F)
+ print(' <AdditionalDependencies>%s.lib;libmex.lib;libmx.lib;libut.lib;%%(AdditionalDependencies)</AdditionalDependencies>' % (c.target(), ), file=F)
+ l = ' <AdditionalLibraryDirectories>';
+ if c.x64:
+ l += '..\\..\\lib\\x64\\;..\\..\\bin\\x64\\'
+ else:
+ l += '..\\..\\lib\\win32\\;..\\..\\bin\\win32\\'
+ l += c.config()
+ if c.x64:
+ l += ';$(MATLAB_ROOT)\extern\lib\win64\microsoft'
+ else:
+ l += ';$(MATLAB_ROOT)\extern\lib\win32\microsoft'
+ l += ';%(AdditionalLibraryDirectories)'
+ l += '</AdditionalLibraryDirectories>'
+ print(l, file=F)
+ print(' <ModuleDefinitionFile>mex.def</ModuleDefinitionFile>', file=F)
+ print(' <GenerateDebugInformation>true</GenerateDebugInformation>', file=F)
+ print(' </Link>', file=F)
+ print(' </ItemDefinitionGroup>', file=F)
+ write_project11_end(P, F)
+ F.close()
+
+def write_main_filters11():
+ P = P_astra
+ F = open(P["name"] + ".vcxproj.filters", "w")
+ print(bom + '<?xml version="1.0" encoding="utf-8"?>', file=F)
+ print('<Project ToolsVersion="4.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">', file=F)
+ print(' <ItemGroup>', file=F)
+ for Filter in P_astra["filter_names"]:
+ L = P_astra["filters"][Filter][1:]
+ l = [ f for f in L if len(f) > 3 and f[-3:] == ".cu" ]
+ for f in l:
+ print(' <CudaCompile Include="' + f + '">', file=F)
+ print(' <Filter>' + Filter + '</Filter>', file=F)
+ print(' </CudaCompile>', file=F)
+ print(' </ItemGroup>', file=F)
+ print(' <ItemGroup>', file=F)
+ for Filter in P_astra["filter_names"]:
+ L = P_astra["filters"][Filter][1:]
+ l = [ f for f in L if len(f) > 4 and f[-4:] == ".cpp" ]
+ for f in l:
+ print(' <ClCompile Include="' + f + '">', file=F)
+ print(' <Filter>' + Filter + '</Filter>', file=F)
+ print(' </ClCompile>', file=F)
+ print(' </ItemGroup>', file=F)
+ print(' <ItemGroup>', file=F)
+ for Filter in P_astra["filter_names"]:
+ L = P_astra["filters"][Filter][1:]
+ l = [ f for f in L if len(f) > 2 and f[-2:] == ".h" ]
+ for f in l:
+ print(' <ClInclude Include="' + f + '">', file=F)
+ print(' <Filter>' + Filter + '</Filter>', file=F)
+ print(' </ClInclude>', file=F)
+ print(' </ItemGroup>', file=F)
+ print(' <ItemGroup>', file=F)
+ for Filter in P_astra["filter_names"]:
+ L = P_astra["filters"][Filter][1:]
+ l = [ f for f in L if len(f) > 4 and f[-4:] == ".inl" ]
+ for f in l:
+ print(' <None Include="' + f + '">', file=F)
+ print(' <Filter>' + Filter + '</Filter>', file=F)
+ print(' </None>', file=F)
+ print(' </ItemGroup>', file=F)
+ print(' <ItemGroup>', file=F)
+ for f in P["filter_names"]:
+ print(' <Filter Include="' + f + '">', file=F)
+ print(' <UniqueIdentifier>{' + P["filters"][f][0] + '}</UniqueIdentifier>', file=F)
+ print(' </Filter>', file=F)
+ print(' </ItemGroup>', file=F)
+ print('</Project>', end="", file=F)
+ F.close()
+
+def write_project09_start(P, F):
+ print('<?xml version="1.0" encoding="Windows-1252"?>', file=F)
+ print('<VisualStudioProject', file=F)
+ print('\tProjectType="Visual C++"', file=F)
+ print('\tVersion="9.00"', file=F)
+ if "mex" in P["name"]:
+ print('\tName="%s"' % (P["name"], ), file=F)
+ print('\tProjectGUID="{%s}"' % (P["uuid09"],), file=F)
+ if "mex" in P["name"]:
+ print('\tRootNamespace="astraMatlab"', file=F)
+ else:
+ print('\tRootNamespace="astra"', file=F)
+ print('\tTargetFrameworkVersion="131072"', file=F)
+ print('\t>', file=F)
+ print(r''' <Platforms>
+ <Platform
+ Name="Win32"
+ />
+ <Platform
+ Name="x64"
+ />
+ </Platforms>''', file=F)
+
+def write_project09_unused_tools(F):
+ print(r''' <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />''', file=F)
+
+
+def write_main_project09():
+ P = P_astra;
+ F = open(P["file09"], "w")
+ write_project09_start(P, F)
+ print(r''' <ToolFiles>
+ <DefaultToolFile
+ FileName="NvCudaRuntimeApi.v5.5.rules"
+ />
+ </ToolFiles>''', file=F)
+ print('\t<Configurations>', file=F)
+ for c in configs:
+ print('\t\t<Configuration', file=F)
+ print('\t\t\tName="%s"' % (c.name(), ), file=F)
+ print('\t\t\tOutputDirectory="$(SolutionDir)bin\$(PlatformName)\%s"' % (c.config(), ), file=F)
+ print(r''' IntermediateDirectory="$(OutDir)/obj"
+ ConfigurationType="2"
+ >''', file=F)
+ write_project09_unused_tools(F)
+ print('\t\t\t<Tool', file=F)
+ print('\t\t\t\tName="VCCLCompilerTool"', file=F)
+ if c.cuda:
+ print('\t\t\t\tAdditionalIncludeDirectories="&quot;$(CUDA_INC_PATH)&quot;;lib\\include;include"', file=F)
+ print('\t\t\t\tPreprocessorDefinitions="ASTRA_CUDA;DLL_EXPORTS;__SSE2__"', file=F)
+ else:
+ print('\t\t\t\tAdditionalIncludeDirectories="lib\\include;include"', file=F)
+ print('\t\t\t\tPreprocessorDefinitions="DLL_EXPORTS;__SSE2__"', file=F)
+ if c.debug:
+ print(r''' Optimization="0"
+ InlineFunctionExpansion="0"
+ FavorSizeOrSpeed="0"
+ EnableFiberSafeOptimizations="false"
+ WholeProgramOptimization="false"
+ RuntimeLibrary="3"''', file=F)
+ else:
+ print(r''' Optimization="3"
+ InlineFunctionExpansion="2"
+ FavorSizeOrSpeed="1"
+ RuntimeLibrary="2"''', file=F)
+ if not c.x64: # /arch:SSE2 is implicit on x64
+ print('\t\t\t\tEnableEnhancedInstructionSet="2"', file=F) # SSE2
+ print('\t\t\t\tOpenMP="true"', file=F)
+ print('\t\t\t\tAdditionalOptions="/MP"', file=F) # build with multiple processes
+ print('\t\t\t/>', file=F)
+ print('\t\t\t<Tool', file=F)
+ print('\t\t\t\tName="VCLinkerTool"', file=F)
+ if c.cuda:
+ print('\t\t\t\tAdditionalDependencies="cudart.lib cufft.lib"', file=F)
+ print('\t\t\t\tOutputFile="bin\\%s\\%s.dll"' % (c.platform(), c.target()), file=F)
+ if c.cuda:
+ print('\t\t\t\tAdditionalLibraryDirectories="&quot;.\\lib\\%s&quot;;&quot;$(CUDA_LIB_PATH)&quot;"' % (c.platform(), ), file=F)
+ else:
+ print('\t\t\t\tAdditionalLibraryDirectories="&quot;.\\lib\\%s&quot;"' % (c.platform(), ), file=F)
+ print('\t\t\t\tGenerateManifest="true"', file=F)
+ print('\t\t\t\tModuleDefinitionFile=""', file=F)
+ if c.debug:
+ print('\t\t\t\tGenerateDebugInformation="true"', file=F)
+ if c.x64:
+ print('\t\t\t\tTargetMachine="17"', file=F) # x64
+ else:
+ print('\t\t\t\tTargetMachine="1"', file=F) # x86
+ print('\t\t\t/>', file=F)
+ print('\t\t\t<Tool', file=F)
+ print('\t\t\t\tName="Cudart Build Rule"', file=F)
+ print('\t\t\t\tArch1="20"', file=F)
+ print('\t\t\t\tArch2="30"', file=F)
+ print('\t\t\t\tArch3="35"', file=F)
+ if c.x64:
+ print('\t\t\t\tTargetMachinePlatform="1"', file=F) # x64
+ else:
+ print('\t\t\t\tTargetMachinePlatform="0"', file=F) # x86
+ if c.debug:
+ print('\t\t\t\tRuntime="3"', file=F) # MDD
+ else:
+ print('\t\t\t\tRuntime="2"', file=F) # MD
+ if c.cuda:
+ print('\t\t\t\tDefines="-DASTRA_CUDA -DDLL_EXPORTS"', file=F)
+ else: # This 'else' doesn't make much sense
+ print('\t\t\t\tDefines="-DDLL_EXPORTS"', file=F)
+ # TODO!!!
+ print('\t\t\t/>', file=F)
+ print('\t\t</Configuration>', file=F)
+ print('\t</Configurations>', file=F)
+ print('\t<References>', file=F)
+ print('\t</References>', file=F)
+ print('\t<Files>', file=F)
+ print(r''' <Filter
+ Name="Resource Files"
+ Filter="rc;ico;cur;bmp;dlg;rc2;rct;bin;rgs;gif;jpg;jpeg;jpe;resx;tiff;tif;png;wav"
+ UniqueIdentifier="{67DA6AB6-F800-4c08-8B7A-83BB121AAD01}"
+ >
+ <File
+ RelativePath=".\src\astra.def"
+ >
+ </File>
+ </Filter>''', file=F)
+ curgroup = None
+ for Filter in P["filter_names"]:
+ if "\\" not in Filter:
+ continue
+ # TODO
+ [ group, subgroup ] = Filter.split("\\")
+ if group != curgroup:
+ if curgroup != None:
+ print('\t\t</Filter>', file=F)
+ print('\t\t<Filter', file=F)
+ print('\t\t\tName="%s"' % (group, ), file=F)
+ print('\t\t\t>', file=F)
+ curgroup = group
+ print('\t\t\t<Filter', file=F)
+ print('\t\t\t\tName="%s"' % (subgroup, ), file=F)
+ print('\t\t\t\t>', file=F)
+ for f in P["filters"][Filter][1:]:
+ print('\t\t\t\t<File', file=F)
+ print('\t\t\t\t\tRelativePath=".\\%s"' % (f, ), file=F)
+ print('\t\t\t\t\t>', file=F)
+ if (("Cuda" in f) or ("cuda" in f)) and not (f[-2:] == ".h"):
+ for c in configs:
+ if not c.cuda:
+ print('\t\t\t\t\t<FileConfiguration', file=F)
+ print('\t\t\t\t\t\tName="%s"' % (c.name(), ), file=F)
+ print('\t\t\t\t\t\tExcludedFromBuild="true"', file=F)
+ print('\t\t\t\t\t\t>', file=F)
+ print('\t\t\t\t\t\t<Tool', file=F)
+ if len(f) > 3 and f[-3:] == ".cu":
+ print('\t\t\t\t\t\t\tName="Cudart Build Rule"', file=F)
+ else:
+ print('\t\t\t\t\t\t\tName="VCCLCompilerTool"', file=F)
+ print('\t\t\t\t\t\t/>', file=F)
+ print('\t\t\t\t\t</FileConfiguration>', file=F)
+ print('\t\t\t\t</File>', file=F)
+ print('\t\t\t</Filter>', file=F)
+ print('\t\t</Filter>', file=F)
+ print('\t</Files>', file=F)
+ print('\t<Globals>', file=F)
+ print('\t</Globals>', file=F)
+ print('</VisualStudioProject>', file=F)
+ F.close()
+
+def write_mex_project09(P):
+ F = open("matlab/mex/" + P["name"] + "_vc09.vcproj", "w")
+ write_project09_start(P, F)
+ print('\t<ToolFiles>', file=F)
+ print('\t</ToolFiles>', file=F)
+ print('\t<Configurations>', file=F)
+ for c in configs:
+ print('\t\t<Configuration', file=F)
+ print('\t\t\tName="%s"' % (c.name(), ), file=F)
+ print('\t\t\tOutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"', file=F)
+ print(r''' IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >''', file=F)
+ write_project09_unused_tools(F)
+ print('\t\t\t<Tool', file=F)
+ print('\t\t\t\tName="VCCLCompilerTool"', file=F)
+ if c.cuda:
+ print('\t\t\t\tAdditionalIncludeDirectories="$(MATLAB_ROOT)\\extern\\include\\;&quot;$(CUDA_INC_PATH)&quot;;..\\..\\lib\\include;..\\..\\include"', file=F)
+ print('\t\t\t\tPreprocessorDefinitions="ASTRA_CUDA;__SSE2__"', file=F)
+ else:
+ print('\t\t\t\tAdditionalIncludeDirectories="$(MATLAB_ROOT)\\extern\\include\\;..\\..\\lib\\include;..\\..\\include"', file=F)
+ print('\t\t\t\tPreprocessorDefinitions="__SSE2__"', file=F)
+ if c.debug:
+ print(r''' Optimization="0"
+ RuntimeLibrary="3"''', file=F)
+ else:
+ print(r''' Optimization="2"
+ RuntimeLibrary="2"''', file=F)
+ if not c.x64: # /arch:SSE2 is implicit on x64
+ print('\t\t\t\tEnableEnhancedInstructionSet="2"', file=F) # SSE2
+ print('\t\t\t\tOpenMP="true"', file=F)
+ print('\t\t\t\tAdditionalOptions="/MP"', file=F) # build with multiple processes
+ print('\t\t\t/>', file=F)
+ print('\t\t\t<Tool', file=F)
+ print('\t\t\t\tName="VCLinkerTool"', file=F)
+ print('\t\t\t\tAdditionalDependencies="%s.lib libmex.lib libmx.lib libut.lib"' % (c.target(), ), file=F)
+ if c.x64:
+ print('\t\t\t\tOutputFile="$(OutDir)\\$(ProjectName)_c.mexw64"', file=F)
+ else:
+ print('\t\t\t\tOutputFile="$(OutDir)\\$(ProjectName)_c.mexw32"', file=F)
+ if c.x64:
+ print('\t\t\t\tAdditionalLibraryDirectories="..\\..\\bin\\x64;$(MATLAB_ROOT)\\extern\\lib\\win64\\microsoft;..\\..\\lib\\x64"', file=F)
+ else:
+ print('\t\t\t\tAdditionalLibraryDirectories="..\\..\\bin\\win32;$(MATLAB_ROOT)\\extern\\lib\\win32\\microsoft;..\\..\\lib\\win32"', file=F)
+ print('\t\t\t\tModuleDefinitionFile="mex.def"', file=F)
+ if c.debug:
+ print('\t\t\t\tGenerateDebugInformation="true"', file=F)
+ else:
+ print('\t\t\t\tGenerateDebugInformation="false"', file=F)
+ if c.x64:
+ print('\t\t\t\tTargetMachine="17"', file=F) # x64
+ else:
+ print('\t\t\t\tTargetMachine="1"', file=F) # x86
+ print('\t\t\t/>', file=F)
+ print('\t\t</Configuration>', file=F)
+ print('\t</Configurations>', file=F)
+ print('\t<References>', file=F)
+ print('\t</References>', file=F)
+ print('\t<Files>', file=F)
+ for f in P["files"]:
+ print('\t\t<File', file=F)
+ print('\t\t\tRelativePath=".\\%s"' % (f, ), file=F)
+ print('\t\t\t>', file=F)
+ print('\t\t</File>', file=F)
+ print('\t</Files>', file=F)
+ print('\t<Globals>', file=F)
+ print('\t</Globals>', file=F)
+ print('</VisualStudioProject>', file=F)
+
+
+
+if (len(sys.argv) != 2) or (sys.argv[1] not in ["vc09", "vc11", "all"]):
+ print("Usage: python gen.py [vc09|vc11|all]", file=sys.stderr)
+ sys.exit(1)
+
+
+
+try:
+ open("../../src/AstraObjectManager.cpp", "r")
+except IOError:
+ print("Run gen.py from the build/msvc directory", file=sys.stderr)
+ sys.exit(1)
+
+# Change directory to main dir
+os.chdir("../..")
+
+if sys.argv[1] in ["vc11", "all"]:
+ # HACK
+ P_astra["name"] = "astra_vc11"
+ write_sln(11)
+ write_main_project11()
+ write_main_filters11()
+ write_mex_project11(P0)
+ write_mex_project11(P1)
+ write_mex_project11(P2)
+ write_mex_project11(P3)
+ write_mex_project11(P4)
+ write_mex_project11(P5)
+ write_mex_project11(P6)
+ write_mex_project11(P7)
+
+if sys.argv[1] in ["vc09", "all"]:
+ # HACK
+ P_astra["name"] = "astra"
+
+ write_sln(9)
+ write_main_project09()
+ write_mex_project09(P0)
+ write_mex_project09(P1)
+ write_mex_project09(P2)
+ write_mex_project09(P3)
+ write_mex_project09(P4)
+ write_mex_project09(P5)
+ write_mex_project09(P6)
+ write_mex_project09(P7)
diff --git a/cuda/2d/astra.cu b/cuda/2d/astra.cu
index d7ddc26..2f72db0 100644
--- a/cuda/2d/astra.cu
+++ b/cuda/2d/astra.cu
@@ -42,7 +42,12 @@ $Id$
#include <fstream>
#include <cuda.h>
-#include "../../include/astra/Logger.h"
+#include "../../include/astra/VolumeGeometry2D.h"
+#include "../../include/astra/ParallelProjectionGeometry2D.h"
+#include "../../include/astra/FanFlatProjectionGeometry2D.h"
+#include "../../include/astra/FanFlatVecProjectionGeometry2D.h"
+
+#include "../../include/astra/Logging.h"
// For fan beam FBP weighting
#include "../3d/fdk.h"
@@ -64,6 +69,7 @@ public:
SDimensions dims;
float* angles;
float* TOffsets;
+ astraCUDA::SFanProjection* fanProjections;
float fOriginSourceDistance;
float fOriginDetectorDistance;
@@ -90,6 +96,8 @@ AstraFBP::AstraFBP()
pData = new AstraFBP_internal();
pData->angles = 0;
+ pData->fanProjections = 0;
+ pData->TOffsets = 0;
pData->D_sinoData = 0;
pData->D_volumeData = 0;
@@ -113,6 +121,9 @@ AstraFBP::~AstraFBP()
delete[] pData->TOffsets;
pData->TOffsets = 0;
+ delete[] pData->fanProjections;
+ pData->fanProjections = 0;
+
cudaFree(pData->D_sinoData);
pData->D_sinoData = 0;
@@ -169,6 +180,7 @@ bool AstraFBP::setProjectionGeometry(unsigned int iProjAngles,
bool AstraFBP::setFanGeometry(unsigned int iProjAngles,
unsigned int iProjDets,
+ const astraCUDA::SFanProjection *fanProjs,
const float* pfAngles,
float fOriginSourceDistance,
float fOriginDetectorDistance,
@@ -182,6 +194,9 @@ bool AstraFBP::setFanGeometry(unsigned int iProjAngles,
pData->fOriginSourceDistance = fOriginSourceDistance;
pData->fOriginDetectorDistance = fOriginDetectorDistance;
+ pData->fanProjections = new astraCUDA::SFanProjection[iProjAngles];
+ memcpy(pData->fanProjections, fanProjs, iProjAngles * sizeof(fanProjs[0]));
+
pData->bFanBeam = true;
pData->bShortScan = bShortScan;
@@ -310,7 +325,7 @@ bool AstraFBP::run()
// Call FDK_PreWeight to handle fan beam geometry. We treat
// this as a cone beam setup of a single slice:
- // TODO: TOffsets...
+ // TODO: TOffsets affects this preweighting...
// We create a fake cudaPitchedPtr
cudaPitchedPtr tmp;
@@ -354,29 +369,7 @@ bool AstraFBP::run()
}
if (pData->bFanBeam) {
- // TODO: TOffsets?
- // TODO: Remove this code duplication with CudaReconstructionAlgorithm
- SFanProjection* projs;
- projs = new SFanProjection[pData->dims.iProjAngles];
-
- float fSrcX0 = 0.0f;
- float fSrcY0 = -pData->fOriginSourceDistance / pData->fPixelSize;
- float fDetUX0 = pData->dims.fDetScale;
- float fDetUY0 = 0.0f;
- float fDetSX0 = pData->dims.iProjDets * fDetUX0 / -2.0f;
- float fDetSY0 = pData->fOriginDetectorDistance / pData->fPixelSize;
-
-#define ROTATE0(name,i,alpha) do { projs[i].f##name##X = f##name##X0 * cos(alpha) - f##name##Y0 * sin(alpha); projs[i].f##name##Y = f##name##X0 * sin(alpha) + f##name##Y0 * cos(alpha); } while(0)
- for (unsigned int i = 0; i < pData->dims.iProjAngles; ++i) {
- ROTATE0(Src, i, pData->angles[i]);
- ROTATE0(DetS, i, pData->angles[i]);
- ROTATE0(DetU, i, pData->angles[i]);
- }
-
-#undef ROTATE0
- ok = FanBP_FBPWeighted(pData->D_volumeData, pData->volumePitch, pData->D_sinoData, pData->sinoPitch, pData->dims, projs);
-
- delete[] projs;
+ ok = FanBP_FBPWeighted(pData->D_volumeData, pData->volumePitch, pData->D_sinoData, pData->sinoPitch, pData->dims, pData->fanProjections);
} else {
ok = BP(pData->D_volumeData, pData->volumePitch, pData->D_sinoData, pData->sinoPitch, pData->dims, pData->angles, pData->TOffsets);
@@ -546,7 +539,7 @@ bool AstraFBP::setFilter(E_FBPFILTER _eFilter, const float * _pfHostFilter /* =
int iMaxFilterIndex = iStartFilterIndex + iUsedFilterWidth;
int iFilterShiftSize = _iFilterWidth / 2;
-
+
for(int iDetectorIndex = iStartFilterIndex; iDetectorIndex < iMaxFilterIndex; iDetectorIndex++)
{
int iFFTInFilterIndex = (iDetectorIndex + iFFTRealDetCount - iFilterShiftSize) % iFFTRealDetCount;
@@ -571,7 +564,7 @@ bool AstraFBP::setFilter(E_FBPFILTER _eFilter, const float * _pfHostFilter /* =
}
default:
{
- fprintf(stderr, "AstraFBP::setFilter: Unknown filter type requested");
+ ASTRA_ERROR("AstraFBP::setFilter: Unknown filter type requested");
delete [] pHostFilter;
return false;
}
@@ -628,7 +621,7 @@ bool astraCudaFP(const float* pfVolume, float* pfSinogram,
unsigned int iProjAngles, unsigned int iProjDets,
const float *pfAngles, const float *pfOffsets,
float fDetSize, unsigned int iDetSuperSampling,
- int iGPUIndex)
+ float fOutputScale, int iGPUIndex)
{
SDimensions dims;
@@ -687,7 +680,7 @@ bool astraCudaFP(const float* pfVolume, float* pfSinogram,
}
zeroProjectionData(D_sinoData, sinoPitch, dims);
- ok = FP(D_volumeData, volumePitch, D_sinoData, sinoPitch, dims, pfAngles, pfOffsets, 1.0f);
+ ok = FP(D_volumeData, volumePitch, D_sinoData, sinoPitch, dims, pfAngles, pfOffsets, fOutputScale);
if (!ok) {
cudaFree(D_volumeData);
cudaFree(D_sinoData);
@@ -711,19 +704,18 @@ bool astraCudaFP(const float* pfVolume, float* pfSinogram,
bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
unsigned int iVolWidth, unsigned int iVolHeight,
unsigned int iProjAngles, unsigned int iProjDets,
- const float *pfAngles, float fOriginSourceDistance,
- float fOriginDetectorDistance, float fPixelSize,
- float fDetSize,
- unsigned int iDetSuperSampling,
+ const SFanProjection *pAngles,
+ unsigned int iDetSuperSampling, float fOutputScale,
int iGPUIndex)
{
SDimensions dims;
- if (iProjAngles == 0 || iProjDets == 0 || pfAngles == 0)
+ if (iProjAngles == 0 || iProjDets == 0 || pAngles == 0)
return false;
dims.iProjAngles = iProjAngles;
dims.iProjDets = iProjDets;
+ dims.fDetScale = 1.0f; // TODO?
if (iDetSuperSampling == 0)
return false;
@@ -774,27 +766,7 @@ bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
zeroProjectionData(D_sinoData, sinoPitch, dims);
- // TODO: Turn this geometry conversion into a util function
- SFanProjection* projs = new SFanProjection[dims.iProjAngles];
-
- float fSrcX0 = 0.0f;
- float fSrcY0 = -fOriginSourceDistance / fPixelSize;
- float fDetUX0 = fDetSize / fPixelSize;
- float fDetUY0 = 0.0f;
- float fDetSX0 = dims.iProjDets * fDetUX0 / -2.0f;
- float fDetSY0 = fOriginDetectorDistance / fPixelSize;
-
-#define ROTATE0(name,i,alpha) do { projs[i].f##name##X = f##name##X0 * cos(alpha) - f##name##Y0 * sin(alpha); projs[i].f##name##Y = f##name##X0 * sin(alpha) + f##name##Y0 * cos(alpha); } while(0)
- for (int i = 0; i < dims.iProjAngles; ++i) {
- ROTATE0(Src, i, pfAngles[i]);
- ROTATE0(DetS, i, pfAngles[i]);
- ROTATE0(DetU, i, pfAngles[i]);
- }
-
-#undef ROTATE0
-
- ok = FanFP(D_volumeData, volumePitch, D_sinoData, sinoPitch, dims, projs, 1.0f);
- delete[] projs;
+ ok = FanFP(D_volumeData, volumePitch, D_sinoData, sinoPitch, dims, pAngles, fOutputScale);
if (!ok) {
cudaFree(D_volumeData);
@@ -819,94 +791,205 @@ bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
}
-bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
- unsigned int iVolWidth, unsigned int iVolHeight,
- unsigned int iProjAngles, unsigned int iProjDets,
- const SFanProjection *pAngles,
- unsigned int iDetSuperSampling,
- int iGPUIndex)
+bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
+ const CParallelProjectionGeometry2D* pProjGeom,
+ float*& detectorOffsets, float*& projectionAngles,
+ float& detSize, float& outputScale)
{
- SDimensions dims;
+ assert(pVolGeom);
+ assert(pProjGeom);
+ assert(pProjGeom->getProjectionAngles());
- if (iProjAngles == 0 || iProjDets == 0 || pAngles == 0)
- return false;
+ const float EPS = 0.00001f;
- dims.iProjAngles = iProjAngles;
- dims.iProjDets = iProjDets;
- dims.fDetScale = 1.0f; // TODO?
+ int nth = pProjGeom->getProjectionAngleCount();
- if (iDetSuperSampling == 0)
+ // Check if pixels are square
+ if (abs(pVolGeom->getPixelLengthX() - pVolGeom->getPixelLengthY()) > EPS)
return false;
- dims.iRaysPerDet = iDetSuperSampling;
-
- if (iVolWidth <= 0 || iVolHeight <= 0)
- return false;
- dims.iVolWidth = iVolWidth;
- dims.iVolHeight = iVolHeight;
+ // Scale volume pixels to 1x1
+ detSize = pProjGeom->getDetectorWidth() / pVolGeom->getPixelLengthX();
- if (iGPUIndex != -1) {
- cudaSetDevice(iGPUIndex);
- cudaError_t err = cudaGetLastError();
+ // Copy angles
+ float *angles = new float[nth];
+ for (int i = 0; i < nth; ++i)
+ angles[i] = pProjGeom->getProjectionAngles()[i];
+ projectionAngles = angles;
- // Ignore errors caused by calling cudaSetDevice multiple times
- if (err != cudaSuccess && err != cudaErrorSetOnActiveProcess)
- return false;
+ // Check if we need to translate
+ bool offCenter = false;
+ if (abs(pVolGeom->getWindowMinX() + pVolGeom->getWindowMaxX()) > EPS ||
+ abs(pVolGeom->getWindowMinY() + pVolGeom->getWindowMaxY()) > EPS)
+ {
+ offCenter = true;
}
- bool ok;
+ // If there are existing detector offsets, or if we need to translate,
+ // we need to return offsets
+ if (pProjGeom->getExtraDetectorOffset() || offCenter)
+ {
+ float* offset = new float[nth];
+
+ if (pProjGeom->getExtraDetectorOffset()) {
+ for (int i = 0; i < nth; ++i)
+ offset[i] = pProjGeom->getExtraDetectorOffset()[i];
+ } else {
+ for (int i = 0; i < nth; ++i)
+ offset[i] = 0.0f;
+ }
- float* D_volumeData;
- unsigned int volumePitch;
+ if (offCenter) {
+ float dx = (pVolGeom->getWindowMinX() + pVolGeom->getWindowMaxX()) / 2;
+ float dy = (pVolGeom->getWindowMinY() + pVolGeom->getWindowMaxY()) / 2;
- ok = allocateVolumeData(D_volumeData, volumePitch, dims);
- if (!ok)
- return false;
+ // CHECKME: Is d in pixels or in units?
- float* D_sinoData;
- unsigned int sinoPitch;
+ for (int i = 0; i < nth; ++i) {
+ float d = dx * cos(angles[i]) + dy * sin(angles[i]);
+ offset[i] += d;
+ }
+ }
- ok = allocateProjectionData(D_sinoData, sinoPitch, dims);
- if (!ok) {
- cudaFree(D_volumeData);
- return false;
+ // CHECKME: Order of scaling and translation
+
+ // Scale volume pixels to 1x1
+ for (int i = 0; i < nth; ++i) {
+ //offset[i] /= pVolGeom->getPixelLengthX();
+ //offset[i] *= detSize;
+ }
+
+
+ detectorOffsets = offset;
+ } else {
+ detectorOffsets = 0;
}
- ok = copyVolumeToDevice(pfVolume, dims.iVolWidth,
- dims,
- D_volumeData, volumePitch);
- if (!ok) {
- cudaFree(D_volumeData);
- cudaFree(D_sinoData);
- return false;
+ outputScale = pVolGeom->getPixelLengthX();
+ outputScale *= outputScale;
+
+ return true;
+}
+
+static void convertAstraGeometry_internal(const CVolumeGeometry2D* pVolGeom,
+ unsigned int iProjectionAngleCount,
+ astraCUDA::SFanProjection*& pProjs,
+ float& outputScale)
+{
+ // Translate
+ float dx = (pVolGeom->getWindowMinX() + pVolGeom->getWindowMaxX()) / 2;
+ float dy = (pVolGeom->getWindowMinY() + pVolGeom->getWindowMaxY()) / 2;
+
+ for (int i = 0; i < iProjectionAngleCount; ++i) {
+ pProjs[i].fSrcX -= dx;
+ pProjs[i].fSrcY -= dy;
+ pProjs[i].fDetSX -= dx;
+ pProjs[i].fDetSY -= dy;
}
- zeroProjectionData(D_sinoData, sinoPitch, dims);
+ // CHECKME: Order of scaling and translation
- ok = FanFP(D_volumeData, volumePitch, D_sinoData, sinoPitch, dims, pAngles, 1.0f);
+ // Scale
+ float factor = 1.0f / pVolGeom->getPixelLengthX();
+ for (int i = 0; i < iProjectionAngleCount; ++i) {
+ pProjs[i].fSrcX *= factor;
+ pProjs[i].fSrcY *= factor;
+ pProjs[i].fDetSX *= factor;
+ pProjs[i].fDetSY *= factor;
+ pProjs[i].fDetUX *= factor;
+ pProjs[i].fDetUY *= factor;
- if (!ok) {
- cudaFree(D_volumeData);
- cudaFree(D_sinoData);
- return false;
}
- ok = copySinogramFromDevice(pfSinogram, dims.iProjDets,
- dims,
- D_sinoData, sinoPitch);
- if (!ok) {
- cudaFree(D_volumeData);
- cudaFree(D_sinoData);
+ // CHECKME: Check factor
+ outputScale = pVolGeom->getPixelLengthX();
+// outputScale *= outputScale;
+}
+
+
+bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
+ const CFanFlatProjectionGeometry2D* pProjGeom,
+ astraCUDA::SFanProjection*& pProjs,
+ float& outputScale)
+{
+ assert(pVolGeom);
+ assert(pProjGeom);
+ assert(pProjGeom->getProjectionAngles());
+
+ const float EPS = 0.00001f;
+
+ int nth = pProjGeom->getProjectionAngleCount();
+
+ // Check if pixels are square
+ if (abs(pVolGeom->getPixelLengthX() - pVolGeom->getPixelLengthY()) > EPS)
return false;
+
+ // TODO: Deprecate this.
+// if (pProjGeom->getExtraDetectorOffset())
+// return false;
+
+
+ float fOriginSourceDistance = pProjGeom->getOriginSourceDistance();
+ float fOriginDetectorDistance = pProjGeom->getOriginDetectorDistance();
+ float fDetSize = pProjGeom->getDetectorWidth();
+ const float *pfAngles = pProjGeom->getProjectionAngles();
+
+ pProjs = new SFanProjection[nth];
+
+ float fSrcX0 = 0.0f;
+ float fSrcY0 = -fOriginSourceDistance;
+ float fDetUX0 = fDetSize;
+ float fDetUY0 = 0.0f;
+ float fDetSX0 = pProjGeom->getDetectorCount() * fDetUX0 / -2.0f;
+ float fDetSY0 = fOriginDetectorDistance;
+
+#define ROTATE0(name,i,alpha) do { pProjs[i].f##name##X = f##name##X0 * cos(alpha) - f##name##Y0 * sin(alpha); pProjs[i].f##name##Y = f##name##X0 * sin(alpha) + f##name##Y0 * cos(alpha); } while(0)
+ for (int i = 0; i < nth; ++i) {
+ ROTATE0(Src, i, pfAngles[i]);
+ ROTATE0(DetS, i, pfAngles[i]);
+ ROTATE0(DetU, i, pfAngles[i]);
}
- cudaFree(D_volumeData);
- cudaFree(D_sinoData);
+#undef ROTATE0
+
+ convertAstraGeometry_internal(pVolGeom, nth, pProjs, outputScale);
return true;
}
+bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
+ const CFanFlatVecProjectionGeometry2D* pProjGeom,
+ astraCUDA::SFanProjection*& pProjs,
+ float& outputScale)
+{
+ assert(pVolGeom);
+ assert(pProjGeom);
+ assert(pProjGeom->getProjectionVectors());
+
+ const float EPS = 0.00001f;
+
+ int nx = pVolGeom->getGridColCount();
+ int ny = pVolGeom->getGridRowCount();
+ int nth = pProjGeom->getProjectionAngleCount();
+
+ // Check if pixels are square
+ if (abs(pVolGeom->getPixelLengthX() - pVolGeom->getPixelLengthY()) > EPS)
+ return false;
+
+ pProjs = new SFanProjection[nth];
+
+ // Copy vectors
+ for (int i = 0; i < nth; ++i)
+ pProjs[i] = pProjGeom->getProjectionVectors()[i];
+
+ convertAstraGeometry_internal(pVolGeom, nth, pProjs, outputScale);
+
+ return true;
+}
+
+
+
}
diff --git a/cuda/2d/astra.h b/cuda/2d/astra.h
index 474f99a..617883b 100644
--- a/cuda/2d/astra.h
+++ b/cuda/2d/astra.h
@@ -42,6 +42,11 @@ enum Cuda2DProjectionKernel {
ker2d_default = 0
};
+class CParallelProjectionGeometry2D;
+class CFanFlatProjectionGeometry2D;
+class CFanFlatVecProjectionGeometry2D;
+class CVolumeGeometry2D;
+
class AstraFBP_internal;
class _AstraExport AstraFBP {
@@ -73,9 +78,10 @@ public:
// fDetSize indicates the size of a detector pixel compared to a
// volume pixel edge.
//
- // pfAngles will only be read from during this call.
+ // pfAngles, fanProjs will only be read from during this call.
bool setFanGeometry(unsigned int iProjAngles,
unsigned int iProjDets,
+ const astraCUDA::SFanProjection *fanProjs,
const float *pfAngles,
float fOriginSourceDistance,
float fOriginDetectorDistance,
@@ -195,24 +201,31 @@ _AstraExport bool astraCudaFP(const float* pfVolume, float* pfSinogram,
unsigned int iProjAngles, unsigned int iProjDets,
const float *pfAngles, const float *pfOffsets,
float fDetSize = 1.0f, unsigned int iDetSuperSampling = 1,
- int iGPUIndex = 0);
-
-// Do a single forward projection, fan beam
-_AstraExport bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
- unsigned int iVolWidth, unsigned int iVolHeight,
- unsigned int iProjAngles, unsigned int iProjDets,
- const float *pfAngles, float fOriginSourceDistance,
- float fOriginDetectorDistance, float fPixelSize = 1.0f,
- float fDetSize = 1.0f,
- unsigned int iDetSuperSampling = 1,
- int iGPUIndex = 0);
+ float fOutputScale = 1.0f, int iGPUIndex = 0);
_AstraExport bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
unsigned int iVolWidth, unsigned int iVolHeight,
unsigned int iProjAngles, unsigned int iProjDets,
const SFanProjection *pAngles,
unsigned int iDetSuperSampling = 1,
- int iGPUIndex = 0);
+ float fOutputScale = 1.0f, int iGPUIndex = 0);
+
+
+_AstraExport bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
+ const CParallelProjectionGeometry2D* pProjGeom,
+ float*& pfDetectorOffsets, float*& pfProjectionAngles,
+ float& fDetSize, float& fOutputScale);
+
+_AstraExport bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
+ const CFanFlatProjectionGeometry2D* pProjGeom,
+ astraCUDA::SFanProjection*& pProjs,
+ float& outputScale);
+
+_AstraExport bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
+ const CFanFlatVecProjectionGeometry2D* pProjGeom,
+ astraCUDA::SFanProjection*& pProjs,
+ float& outputScale);
+
}
#endif
diff --git a/cuda/2d/dims.h b/cuda/2d/dims.h
index 37bfa66..e870da5 100644
--- a/cuda/2d/dims.h
+++ b/cuda/2d/dims.h
@@ -29,18 +29,12 @@ $Id$
#ifndef _CUDA_DIMS_H
#define _CUDA_DIMS_H
-namespace astraCUDA {
+#include "astra/GeometryUtil2D.h"
-struct SFanProjection {
- // the source
- float fSrcX, fSrcY;
- // the start of the (linear) detector
- float fDetSX, fDetSY;
+namespace astraCUDA {
- // the length of a single detector pixel
- float fDetUX, fDetUY;
-};
+using astra::SFanProjection;
struct SDimensions {
diff --git a/cuda/2d/fft.cu b/cuda/2d/fft.cu
index d105e29..2bfd493 100644
--- a/cuda/2d/fft.cu
+++ b/cuda/2d/fft.cu
@@ -34,7 +34,7 @@ $Id$
#include <cuda.h>
#include <fstream>
-#include "../../include/astra/Logger.h"
+#include "../../include/astra/Logging.h"
using namespace astra;
@@ -43,25 +43,22 @@ using namespace astra;
#define CHECK_ERROR(errorMessage) do { \
cudaError_t err = cudaThreadSynchronize(); \
if( cudaSuccess != err) { \
- fprintf(stderr, "Cuda error: %s in file '%s' in line %i : %s.\n", \
- errorMessage, __FILE__, __LINE__, cudaGetErrorString( err) );\
- CLogger::writeTerminalCUDAError(__FILE__, __LINE__, cudaGetErrorString( err)); \
+ ASTRA_ERROR("Cuda error %s : %s", \
+ errorMessage,cudaGetErrorString( err)); \
exit(EXIT_FAILURE); \
} } while (0)
#define SAFE_CALL( call) do { \
cudaError err = call; \
if( cudaSuccess != err) { \
- fprintf(stderr, "Cuda error in file '%s' in line %i : %s.\n", \
- __FILE__, __LINE__, cudaGetErrorString( err) ); \
- CLogger::writeTerminalCUDAError(__FILE__, __LINE__, cudaGetErrorString( err)); \
+ ASTRA_ERROR("Cuda error: %s ", \
+ cudaGetErrorString( err)); \
exit(EXIT_FAILURE); \
} \
err = cudaThreadSynchronize(); \
if( cudaSuccess != err) { \
- fprintf(stderr, "Cuda error in file '%s' in line %i : %s.\n", \
- __FILE__, __LINE__, cudaGetErrorString( err) ); \
- CLogger::writeTerminalCUDAError(__FILE__, __LINE__, cudaGetErrorString( err)); \
+ ASTRA_ERROR("Cuda error: %s : ", \
+ cudaGetErrorString( err)); \
exit(EXIT_FAILURE); \
} } while (0)
@@ -140,7 +137,7 @@ static bool invokeCudaFFT(int _iProjectionCount, int _iDetectorCount,
result = cufftPlan1d(&plan, _iDetectorCount, CUFFT_R2C, _iProjectionCount);
if(result != CUFFT_SUCCESS)
{
- std::cerr << "Failed to plan 1d r2c fft" << std::endl;
+ ASTRA_ERROR("Failed to plan 1d r2c fft");
return false;
}
@@ -149,7 +146,7 @@ static bool invokeCudaFFT(int _iProjectionCount, int _iDetectorCount,
if(result != CUFFT_SUCCESS)
{
- std::cerr << "Failed to exec 1d r2c fft" << std::endl;
+ ASTRA_ERROR("Failed to exec 1d r2c fft");
return false;
}
@@ -166,18 +163,18 @@ static bool invokeCudaIFFT(int _iProjectionCount, int _iDetectorCount,
result = cufftPlan1d(&plan, _iDetectorCount, CUFFT_C2R, _iProjectionCount);
if(result != CUFFT_SUCCESS)
{
- std::cerr << "Failed to plan 1d c2r fft" << std::endl;
+ ASTRA_ERROR("Failed to plan 1d c2r fft");
return false;
}
// todo: why do we have to get rid of the const qualifier?
result = cufftExecC2R(plan, (cufftComplex *)_pDevSourceComplex,
- (cufftReal *)_pfDevTarget);
+ (cufftReal *)_pfDevTarget);
cufftDestroy(plan);
if(result != CUFFT_SUCCESS)
{
- std::cerr << "Failed to exec 1d c2r fft" << std::endl;
+ ASTRA_ERROR("Failed to exec 1d c2r fft");
return false;
}
@@ -257,7 +254,7 @@ bool runCudaIFFT(int _iProjectionCount, const cufftComplex* _pDevSourceComplex,
}
rescaleInverseFourier(_iProjectionCount, _iFFTRealDetectorCount,
- pfDevRealFFTTarget);
+ pfDevRealFFTTarget);
SAFE_CALL(cudaMemset(_pfRealTarget, 0, sizeof(float) * _iProjectionCount * _iTargetPitch));
@@ -460,7 +457,7 @@ void genFilter(E_FBPFILTER _eFilter, float _fD, int _iProjectionCount,
const float fA1 = 0.48f;
const float fA2 = 0.38f;
float fNMinusOne = (float)(_iFFTFourierDetectorCount) - 1.0f;
-
+
for(int iDetectorIndex = 1; iDetectorIndex < _iFFTFourierDetectorCount; iDetectorIndex++)
{
float fSmallN = (float)iDetectorIndex;
@@ -633,7 +630,7 @@ void genFilter(E_FBPFILTER _eFilter, float _fD, int _iProjectionCount,
}
default:
{
- std::cerr << "Cannot serve requested filter" << std::endl;
+ ASTRA_ERROR("Cannot serve requested filter");
}
}
@@ -746,7 +743,7 @@ void testCudaFFT()
{
for(int iDetectorIndex = 0; iDetectorIndex < iDetectorCount; iDetectorIndex++)
{
-// int
+// int
// pfHostProj[iIndex] = (float)rand() / (float)RAND_MAX;
}
@@ -767,13 +764,13 @@ void testCudaFFT()
result = cufftPlan1d(&plan, iDetectorCount, CUFFT_R2C, iProjectionCount);
if(result != CUFFT_SUCCESS)
{
- cerr << "Failed to plan 1d r2c fft" << endl;
+ ASTRA_ERROR("Failed to plan 1d r2c fft");
}
result = cufftExecR2C(plan, pfDevProj, pDevFourProj);
if(result != CUFFT_SUCCESS)
{
- cerr << "Failed to exec 1d r2c fft" << endl;
+ ASTRA_ERROR("Failed to exec 1d r2c fft");
}
cufftDestroy(plan);
@@ -787,7 +784,7 @@ void testCudaFFT()
float * pfHostFourProjImaginary = new float[iTotalElementCount];
convertComplexToRealImg(pHostFourProj, iTotalElementCount, pfHostFourProjReal, pfHostFourProjImaginary);
-
+
writeToMatlabFile("proj_four_real.mat", pfHostFourProjReal, iProjectionCount, iDetectorCount);
writeToMatlabFile("proj_four_imaginary.mat", pfHostFourProjImaginary, iProjectionCount, iDetectorCount);
@@ -797,13 +794,13 @@ void testCudaFFT()
result = cufftPlan1d(&plan, iDetectorCount, CUFFT_C2R, iProjectionCount);
if(result != CUFFT_SUCCESS)
{
- cerr << "Failed to plan 1d c2r fft" << endl;
+ ASTRA_ERROR("Failed to plan 1d c2r fft");
}
result = cufftExecC2R(plan, pDevFourProj, pfDevInFourProj);
if(result != CUFFT_SUCCESS)
{
- cerr << "Failed to exec 1d c2r fft" << endl;
+ ASTRA_ERROR("Failed to exec 1d c2r fft");
}
cufftDestroy(plan);
diff --git a/cuda/2d/util.cu b/cuda/2d/util.cu
index 81e368f..a4f8f3e 100644
--- a/cuda/2d/util.cu
+++ b/cuda/2d/util.cu
@@ -30,6 +30,8 @@ $Id$
#include <cassert>
#include "util.h"
+#include "../../include/astra/Logging.h"
+
namespace astraCUDA {
bool copyVolumeToDevice(const float* in_data, unsigned int in_pitch,
@@ -91,7 +93,7 @@ bool allocateVolume(float*& ptr, unsigned int width, unsigned int height, unsign
cudaError_t ret = cudaMallocPitch((void**)&ptr, &p, sizeof(float)*width, height);
if (ret != cudaSuccess) {
reportCudaError(ret);
- fprintf(stderr, "Failed to allocate %dx%d GPU buffer\n", width, height);
+ ASTRA_ERROR("Failed to allocate %dx%d GPU buffer", width, height);
return false;
}
@@ -259,7 +261,7 @@ bool cudaTextForceKernelsCompletion()
cudaError_t returnedCudaError = cudaThreadSynchronize();
if(returnedCudaError != cudaSuccess) {
- fprintf(stderr, "Failed to force completion of cuda kernels: %d: %s.\n", returnedCudaError, cudaGetErrorString(returnedCudaError));
+ ASTRA_ERROR("Failed to force completion of cuda kernels: %d: %s.", returnedCudaError, cudaGetErrorString(returnedCudaError));
return false;
}
@@ -269,7 +271,7 @@ bool cudaTextForceKernelsCompletion()
void reportCudaError(cudaError_t err)
{
if(err != cudaSuccess)
- fprintf(stderr, "CUDA error %d: %s.\n", err, cudaGetErrorString(err));
+ ASTRA_ERROR("CUDA error %d: %s.", err, cudaGetErrorString(err));
}
diff --git a/cuda/3d/cone_bp.cu b/cuda/3d/cone_bp.cu
index 18ee4b7..5648d6f 100644
--- a/cuda/3d/cone_bp.cu
+++ b/cuda/3d/cone_bp.cu
@@ -47,27 +47,16 @@ static texture3D gT_coneProjTexture;
namespace astraCUDA3d {
-static const unsigned int g_volBlockZ = 16;
+#define ZSIZE 6
+static const unsigned int g_volBlockZ = ZSIZE;
-static const unsigned int g_anglesPerBlock = 64;
-static const unsigned int g_volBlockX = 32;
-static const unsigned int g_volBlockY = 16;
+static const unsigned int g_anglesPerBlock = 32;
+static const unsigned int g_volBlockX = 16;
+static const unsigned int g_volBlockY = 32;
static const unsigned g_MaxAngles = 1024;
-__constant__ float gC_Cux[g_MaxAngles];
-__constant__ float gC_Cuy[g_MaxAngles];
-__constant__ float gC_Cuz[g_MaxAngles];
-__constant__ float gC_Cuc[g_MaxAngles];
-__constant__ float gC_Cvx[g_MaxAngles];
-__constant__ float gC_Cvy[g_MaxAngles];
-__constant__ float gC_Cvz[g_MaxAngles];
-__constant__ float gC_Cvc[g_MaxAngles];
-__constant__ float gC_Cdx[g_MaxAngles];
-__constant__ float gC_Cdy[g_MaxAngles];
-__constant__ float gC_Cdz[g_MaxAngles];
-__constant__ float gC_Cdc[g_MaxAngles];
-
+__constant__ float gC_C[12*g_MaxAngles];
bool bindProjDataTexture(const cudaArray* array)
{
@@ -87,7 +76,9 @@ bool bindProjDataTexture(const cudaArray* array)
}
-__global__ void dev_cone_BP(void* D_volData, unsigned int volPitch, int startAngle, int angleOffset, const SDimensions3D dims)
+//__launch_bounds__(32*16, 4)
+__global__ void dev_cone_BP(void* D_volData, unsigned int volPitch, int startAngle,
+ int angleOffset, const astraCUDA3d::SDimensions3D dims)
{
float* volData = (float*)D_volData;
@@ -99,11 +90,9 @@ __global__ void dev_cone_BP(void* D_volData, unsigned int volPitch, int startAng
// y = rel y
// blockIdx: x = x + y
- // y = z
+ // y = z
- // TO TRY: precompute part of detector intersection formulas in shared mem?
- // TO TRY: inner loop over z, gather ray values in shared mem
const int X = blockIdx.x % ((dims.iVolX+g_volBlockX-1)/g_volBlockX) * g_volBlockX + threadIdx.x;
const int Y = blockIdx.x / ((dims.iVolX+g_volBlockX-1)/g_volBlockX) * g_volBlockY + threadIdx.y;
@@ -114,51 +103,54 @@ __global__ void dev_cone_BP(void* D_volData, unsigned int volPitch, int startAng
return;
const int startZ = blockIdx.y * g_volBlockZ;
- int endZ = startZ + g_volBlockZ;
- if (endZ > dims.iVolZ)
- endZ = dims.iVolZ;
+ const float fX = X - 0.5f*dims.iVolX + 0.5f;
+ const float fY = Y - 0.5f*dims.iVolY + 0.5f;
+ const float fZ = startZ - 0.5f*dims.iVolZ + 0.5f;
- float fX = X - 0.5f*dims.iVolX + 0.5f;
- float fY = Y - 0.5f*dims.iVolY + 0.5f;
- float fZ = startZ - 0.5f*dims.iVolZ + 0.5f;
+ float Z[ZSIZE];
+ for(int i=0; i < ZSIZE; i++)
+ Z[i] = 0.0f;
- for (int Z = startZ; Z < endZ; ++Z, fZ += 1.0f)
- {
- float fVal = 0.0f;
+ {
float fAngle = startAngle + angleOffset + 0.5f;
for (int angle = startAngle; angle < endAngle; ++angle, fAngle += 1.0f)
{
+ float4 fCu = make_float4(gC_C[12*angle+0], gC_C[12*angle+1], gC_C[12*angle+2], gC_C[12*angle+3]);
+ float4 fCv = make_float4(gC_C[12*angle+4], gC_C[12*angle+5], gC_C[12*angle+6], gC_C[12*angle+7]);
+ float4 fCd = make_float4(gC_C[12*angle+8], gC_C[12*angle+9], gC_C[12*angle+10], gC_C[12*angle+11]);
+
+ float fUNum = fCu.w + fX * fCu.x + fY * fCu.y + fZ * fCu.z;
+ float fVNum = fCv.w + fX * fCv.x + fY * fCv.y + fZ * fCv.z;
+ float fDen = fCd.w + fX * fCd.x + fY * fCd.y + fZ * fCd.z;
+
+ float fU,fV, fr;
+
+ for (int idx = 0; idx < ZSIZE; idx++)
+ {
+ fr = __fdividef(1.0f, fDen);
+ fU = fUNum * fr;
+ fV = fVNum * fr;
+ float fVal = tex3D(gT_coneProjTexture, fU, fAngle, fV);
+ Z[idx] += fVal; // fr*fr*fVal;
+
+ fUNum += fCu.z;
+ fVNum += fCv.z;
+ fDen += fCd.z;
+ }
+ }
+ }
- const float fCux = gC_Cux[angle];
- const float fCuy = gC_Cuy[angle];
- const float fCuz = gC_Cuz[angle];
- const float fCuc = gC_Cuc[angle];
- const float fCvx = gC_Cvx[angle];
- const float fCvy = gC_Cvy[angle];
- const float fCvz = gC_Cvz[angle];
- const float fCvc = gC_Cvc[angle];
- const float fCdx = gC_Cdx[angle];
- const float fCdy = gC_Cdy[angle];
- const float fCdz = gC_Cdz[angle];
- const float fCdc = gC_Cdc[angle];
-
- const float fUNum = fCuc + fX * fCux + fY * fCuy + fZ * fCuz;
- const float fVNum = fCvc + fX * fCvx + fY * fCvy + fZ * fCvz;
- const float fDen = fCdc + fX * fCdx + fY * fCdy + fZ * fCdz;
-
- const float fU = fUNum / fDen;
- const float fV = fVNum / fDen;
-
- fVal += tex3D(gT_coneProjTexture, fU, fAngle, fV);
+ int endZ = ZSIZE;
+ if (endZ > dims.iVolZ - startZ)
+ endZ = dims.iVolZ - startZ;
- }
+ for(int i=0; i < endZ; i++)
+ volData[((startZ+i)*dims.iVolY+Y)*volPitch+X] += Z[i];
+} //End kernel
- volData[(Z*dims.iVolY+Y)*volPitch+X] += fVal;
- }
-}
// supersampling version
__global__ void dev_cone_BP_SS(void* D_volData, unsigned int volPitch, int startAngle, int angleOffset, const SDimensions3D dims)
@@ -206,18 +198,18 @@ __global__ void dev_cone_BP_SS(void* D_volData, unsigned int volPitch, int start
for (int angle = startAngle; angle < endAngle; ++angle, fAngle += 1.0f)
{
- const float fCux = gC_Cux[angle];
- const float fCuy = gC_Cuy[angle];
- const float fCuz = gC_Cuz[angle];
- const float fCuc = gC_Cuc[angle];
- const float fCvx = gC_Cvx[angle];
- const float fCvy = gC_Cvy[angle];
- const float fCvz = gC_Cvz[angle];
- const float fCvc = gC_Cvc[angle];
- const float fCdx = gC_Cdx[angle];
- const float fCdy = gC_Cdy[angle];
- const float fCdz = gC_Cdz[angle];
- const float fCdc = gC_Cdc[angle];
+ const float fCux = gC_C[12*angle+0];
+ const float fCuy = gC_C[12*angle+1];
+ const float fCuz = gC_C[12*angle+2];
+ const float fCuc = gC_C[12*angle+3];
+ const float fCvx = gC_C[12*angle+4];
+ const float fCvy = gC_C[12*angle+5];
+ const float fCvz = gC_C[12*angle+6];
+ const float fCvc = gC_C[12*angle+7];
+ const float fCdx = gC_C[12*angle+8];
+ const float fCdy = gC_C[12*angle+9];
+ const float fCdz = gC_C[12*angle+10];
+ const float fCdc = gC_C[12*angle+11];
float fXs = fX;
for (int iSubX = 0; iSubX < dims.iRaysPerVoxelDim; ++iSubX) {
@@ -233,7 +225,7 @@ __global__ void dev_cone_BP_SS(void* D_volData, unsigned int volPitch, int start
const float fU = fUNum / fDen;
const float fV = fVNum / fDen;
- fVal += tex3D(gT_coneProjTexture, fU, fAngle, fV);
+ fVal += tex3D(gT_coneProjTexture, fU, fV, fAngle);
fZs += fSubStep;
}
@@ -246,7 +238,6 @@ __global__ void dev_cone_BP_SS(void* D_volData, unsigned int volPitch, int start
volData[(Z*dims.iVolY+Y)*volPitch+X] += fVal / (dims.iRaysPerVoxelDim*dims.iRaysPerVoxelDim*dims.iRaysPerVoxelDim);
}
-
}
@@ -262,35 +253,37 @@ bool ConeBP_Array(cudaPitchedPtr D_volumeData,
angleCount = dims.iProjAngles - th;
// transfer angles to constant memory
- float* tmp = new float[angleCount];
+ float* tmp = new float[12*angleCount];
// NB: We increment angles at the end of the loop body.
-#define TRANSFER_TO_CONSTANT(expr,name) do { for (unsigned int i = 0; i < angleCount; ++i) tmp[i] = (expr) ; cudaMemcpyToSymbol(gC_##name, tmp, angleCount*sizeof(float), 0, cudaMemcpyHostToDevice); } while (0)
- TRANSFER_TO_CONSTANT( (angles[i].fDetSZ - angles[i].fSrcZ)*angles[i].fDetVY - (angles[i].fDetSY - angles[i].fSrcY)*angles[i].fDetVZ , Cux );
- TRANSFER_TO_CONSTANT( (angles[i].fDetSX - angles[i].fSrcX)*angles[i].fDetVZ -(angles[i].fDetSZ - angles[i].fSrcZ)*angles[i].fDetVX , Cuy );
- TRANSFER_TO_CONSTANT( (angles[i].fDetSY - angles[i].fSrcY)*angles[i].fDetVX - (angles[i].fDetSX - angles[i].fSrcX)*angles[i].fDetVY , Cuz );
- TRANSFER_TO_CONSTANT( (angles[i].fDetSY*angles[i].fDetVZ - angles[i].fDetSZ*angles[i].fDetVY)*angles[i].fSrcX - (angles[i].fDetSX*angles[i].fDetVZ - angles[i].fDetSZ*angles[i].fDetVX)*angles[i].fSrcY + (angles[i].fDetSX*angles[i].fDetVY - angles[i].fDetSY*angles[i].fDetVX)*angles[i].fSrcZ , Cuc );
+#define TRANSFER_TO_CONSTANT(expr,name) do { for (unsigned int i = 0; i < angleCount; ++i) tmp[12*i+name] = (expr) ; } while (0)
- TRANSFER_TO_CONSTANT( (angles[i].fDetSY - angles[i].fSrcY)*angles[i].fDetUZ-(angles[i].fDetSZ - angles[i].fSrcZ)*angles[i].fDetUY, Cvx );
- TRANSFER_TO_CONSTANT( (angles[i].fDetSZ - angles[i].fSrcZ)*angles[i].fDetUX - (angles[i].fDetSX - angles[i].fSrcX)*angles[i].fDetUZ , Cvy );
- TRANSFER_TO_CONSTANT((angles[i].fDetSX - angles[i].fSrcX)*angles[i].fDetUY-(angles[i].fDetSY - angles[i].fSrcY)*angles[i].fDetUX , Cvz );
- TRANSFER_TO_CONSTANT( -(angles[i].fDetSY*angles[i].fDetUZ - angles[i].fDetSZ*angles[i].fDetUY)*angles[i].fSrcX + (angles[i].fDetSX*angles[i].fDetUZ - angles[i].fDetSZ*angles[i].fDetUX)*angles[i].fSrcY - (angles[i].fDetSX*angles[i].fDetUY - angles[i].fDetSY*angles[i].fDetUX)*angles[i].fSrcZ , Cvc );
+ TRANSFER_TO_CONSTANT( (angles[i].fDetSZ - angles[i].fSrcZ)*angles[i].fDetVY - (angles[i].fDetSY - angles[i].fSrcY)*angles[i].fDetVZ , 0 );
+ TRANSFER_TO_CONSTANT( (angles[i].fDetSX - angles[i].fSrcX)*angles[i].fDetVZ -(angles[i].fDetSZ - angles[i].fSrcZ)*angles[i].fDetVX , 1 );
+ TRANSFER_TO_CONSTANT( (angles[i].fDetSY - angles[i].fSrcY)*angles[i].fDetVX - (angles[i].fDetSX - angles[i].fSrcX)*angles[i].fDetVY , 2 );
+ TRANSFER_TO_CONSTANT( (angles[i].fDetSY*angles[i].fDetVZ - angles[i].fDetSZ*angles[i].fDetVY)*angles[i].fSrcX - (angles[i].fDetSX*angles[i].fDetVZ - angles[i].fDetSZ*angles[i].fDetVX)*angles[i].fSrcY + (angles[i].fDetSX*angles[i].fDetVY - angles[i].fDetSY*angles[i].fDetVX)*angles[i].fSrcZ , 3 );
- TRANSFER_TO_CONSTANT( angles[i].fDetUY*angles[i].fDetVZ - angles[i].fDetUZ*angles[i].fDetVY , Cdx );
- TRANSFER_TO_CONSTANT( angles[i].fDetUZ*angles[i].fDetVX - angles[i].fDetUX*angles[i].fDetVZ , Cdy );
- TRANSFER_TO_CONSTANT( angles[i].fDetUX*angles[i].fDetVY - angles[i].fDetUY*angles[i].fDetVX , Cdz );
- TRANSFER_TO_CONSTANT( -angles[i].fSrcX * (angles[i].fDetUY*angles[i].fDetVZ - angles[i].fDetUZ*angles[i].fDetVY) - angles[i].fSrcY * (angles[i].fDetUZ*angles[i].fDetVX - angles[i].fDetUX*angles[i].fDetVZ) - angles[i].fSrcZ * (angles[i].fDetUX*angles[i].fDetVY - angles[i].fDetUY*angles[i].fDetVX) , Cdc );
+ TRANSFER_TO_CONSTANT( (angles[i].fDetSY - angles[i].fSrcY)*angles[i].fDetUZ-(angles[i].fDetSZ - angles[i].fSrcZ)*angles[i].fDetUY, 4 );
+ TRANSFER_TO_CONSTANT( (angles[i].fDetSZ - angles[i].fSrcZ)*angles[i].fDetUX - (angles[i].fDetSX - angles[i].fSrcX)*angles[i].fDetUZ , 5 );
+ TRANSFER_TO_CONSTANT((angles[i].fDetSX - angles[i].fSrcX)*angles[i].fDetUY-(angles[i].fDetSY - angles[i].fSrcY)*angles[i].fDetUX , 6 );
+ TRANSFER_TO_CONSTANT( -(angles[i].fDetSY*angles[i].fDetUZ - angles[i].fDetSZ*angles[i].fDetUY)*angles[i].fSrcX + (angles[i].fDetSX*angles[i].fDetUZ - angles[i].fDetSZ*angles[i].fDetUX)*angles[i].fSrcY - (angles[i].fDetSX*angles[i].fDetUY - angles[i].fDetSY*angles[i].fDetUX)*angles[i].fSrcZ , 7 );
+
+ TRANSFER_TO_CONSTANT( angles[i].fDetUY*angles[i].fDetVZ - angles[i].fDetUZ*angles[i].fDetVY , 8 );
+ TRANSFER_TO_CONSTANT( angles[i].fDetUZ*angles[i].fDetVX - angles[i].fDetUX*angles[i].fDetVZ , 9 );
+ TRANSFER_TO_CONSTANT( angles[i].fDetUX*angles[i].fDetVY - angles[i].fDetUY*angles[i].fDetVX , 10 );
+ TRANSFER_TO_CONSTANT( -angles[i].fSrcX * (angles[i].fDetUY*angles[i].fDetVZ - angles[i].fDetUZ*angles[i].fDetVY) - angles[i].fSrcY * (angles[i].fDetUZ*angles[i].fDetVX - angles[i].fDetUX*angles[i].fDetVZ) - angles[i].fSrcZ * (angles[i].fDetUX*angles[i].fDetVY - angles[i].fDetUY*angles[i].fDetVX) , 11 );
#undef TRANSFER_TO_CONSTANT
+ cudaMemcpyToSymbol(gC_C, tmp, angleCount*12*sizeof(float), 0, cudaMemcpyHostToDevice);
delete[] tmp;
dim3 dimBlock(g_volBlockX, g_volBlockY);
- dim3 dimGrid(((dims.iVolX+g_volBlockX-1)/g_volBlockX)*((dims.iVolY+g_volBlockY-1)/g_volBlockY), (dims.iVolZ+g_volBlockZ-1)/g_volBlockZ);
+ dim3 dimGrid(((dims.iVolX/1+g_volBlockX-1)/(g_volBlockX))*((dims.iVolY/1+1*g_volBlockY-1)/(1*g_volBlockY)), (dims.iVolZ+g_volBlockZ-1)/g_volBlockZ);
// timeval t;
// tic(t);
@@ -336,14 +329,15 @@ bool ConeBP(cudaPitchedPtr D_volumeData,
#ifdef STANDALONE
int main()
{
- SDimensions3D dims;
- dims.iVolX = 256;
- dims.iVolY = 256;
- dims.iVolZ = 256;
- dims.iProjAngles = 180;
+ astraCUDA3d::SDimensions3D dims;
+ dims.iVolX = 512;
+ dims.iVolY = 512;
+ dims.iVolZ = 512;
+ dims.iProjAngles = 496;
dims.iProjU = 512;
dims.iProjV = 512;
- dims.iRaysPerDet = 1;
+ dims.iRaysPerDetDim = 1;
+ dims.iRaysPerVoxelDim = 1;
cudaExtent extentV;
extentV.width = dims.iVolX*sizeof(float);
@@ -364,6 +358,7 @@ int main()
cudaMalloc3D(&projData, extentP);
cudaMemset3D(projData, 0, extentP);
+#if 0
float* slice = new float[256*256];
cudaPitchedPtr ptr;
ptr.ptr = slice;
@@ -397,10 +392,11 @@ int main()
}
#endif
}
+#endif
- SConeProjection angle[180];
- angle[0].fSrcX = -1536;
+ astraCUDA3d::SConeProjection angle[512];
+ angle[0].fSrcX = -5120;
angle[0].fSrcY = 0;
angle[0].fSrcZ = 0;
@@ -417,16 +413,18 @@ int main()
angle[0].fDetVZ = 1;
#define ROTATE0(name,i,alpha) do { angle[i].f##name##X = angle[0].f##name##X * cos(alpha) - angle[0].f##name##Y * sin(alpha); angle[i].f##name##Y = angle[0].f##name##X * sin(alpha) + angle[0].f##name##Y * cos(alpha); } while(0)
- for (int i = 1; i < 180; ++i) {
+ for (int i = 1; i < 512; ++i) {
angle[i] = angle[0];
- ROTATE0(Src, i, i*2*M_PI/180);
- ROTATE0(DetS, i, i*2*M_PI/180);
- ROTATE0(DetU, i, i*2*M_PI/180);
- ROTATE0(DetV, i, i*2*M_PI/180);
+ ROTATE0(Src, i, i*2*M_PI/512);
+ ROTATE0(DetS, i, i*2*M_PI/512);
+ ROTATE0(DetU, i, i*2*M_PI/512);
+ ROTATE0(DetV, i, i*2*M_PI/512);
}
#undef ROTATE0
+#if 0
astraCUDA3d::ConeFP(volData, projData, dims, angle, 1.0f);
+#endif
#if 0
float* bufs = new float[180*512];
@@ -452,6 +450,7 @@ int main()
saveImage(fname, 512, 512, bufp);
}
#endif
+#if 0
for (unsigned int i = 0; i < 256*256; ++i)
slice[i] = 0.0f;
for (unsigned int i = 0; i < 256; ++i) {
@@ -472,6 +471,7 @@ int main()
p.kind = cudaMemcpyHostToDevice;
cudaMemcpy3D(&p);
}
+#endif
astraCUDA3d::ConeBP(volData, projData, dims, angle);
#if 0
diff --git a/cuda/3d/dims3d.h b/cuda/3d/dims3d.h
index de2a0d0..5437a85 100644
--- a/cuda/3d/dims3d.h
+++ b/cuda/3d/dims3d.h
@@ -29,37 +29,7 @@ $Id$
#ifndef _CUDA_CONE_DIMS_H
#define _CUDA_CONE_DIMS_H
-namespace astra {
-
-struct SConeProjection {
- // the source
- double fSrcX, fSrcY, fSrcZ;
-
- // the origin ("bottom left") of the (flat-panel) detector
- double fDetSX, fDetSY, fDetSZ;
-
- // the U-edge of a detector pixel
- double fDetUX, fDetUY, fDetUZ;
-
- // the V-edge of a detector pixel
- double fDetVX, fDetVY, fDetVZ;
-};
-
-struct SPar3DProjection {
- // the ray direction
- double fRayX, fRayY, fRayZ;
-
- // the origin ("bottom left") of the (flat-panel) detector
- double fDetSX, fDetSY, fDetSZ;
-
- // the U-edge of a detector pixel
- double fDetUX, fDetUY, fDetUZ;
-
- // the V-edge of a detector pixel
- double fDetVX, fDetVY, fDetVZ;
-};
-
-}
+#include "astra/GeometryUtil3D.h"
namespace astraCUDA3d {
diff --git a/cuda/3d/par3d_bp.cu b/cuda/3d/par3d_bp.cu
index 8b9dac1..0c33280 100644
--- a/cuda/3d/par3d_bp.cu
+++ b/cuda/3d/par3d_bp.cu
@@ -47,22 +47,16 @@ static texture3D gT_par3DProjTexture;
namespace astraCUDA3d {
-static const unsigned int g_volBlockZ = 16;
+#define ZSIZE 6
+static const unsigned int g_volBlockZ = ZSIZE;
-static const unsigned int g_anglesPerBlock = 64;
-static const unsigned int g_volBlockX = 32;
-static const unsigned int g_volBlockY = 16;
+static const unsigned int g_anglesPerBlock = 32;
+static const unsigned int g_volBlockX = 16;
+static const unsigned int g_volBlockY = 32;
static const unsigned g_MaxAngles = 1024;
-__constant__ float gC_Cux[g_MaxAngles];
-__constant__ float gC_Cuy[g_MaxAngles];
-__constant__ float gC_Cuz[g_MaxAngles];
-__constant__ float gC_Cuc[g_MaxAngles];
-__constant__ float gC_Cvx[g_MaxAngles];
-__constant__ float gC_Cvy[g_MaxAngles];
-__constant__ float gC_Cvz[g_MaxAngles];
-__constant__ float gC_Cvc[g_MaxAngles];
+__constant__ float gC_C[8*g_MaxAngles];
static bool bindProjDataTexture(const cudaArray* array)
@@ -95,12 +89,9 @@ __global__ void dev_par3D_BP(void* D_volData, unsigned int volPitch, int startAn
// y = rel y
// blockIdx: x = x + y
- // y = z
+ // y = z
- // TO TRY: precompute part of detector intersection formulas in shared mem?
- // TO TRY: inner loop over z, gather ray values in shared mem
-
const int X = blockIdx.x % ((dims.iVolX+g_volBlockX-1)/g_volBlockX) * g_volBlockX + threadIdx.x;
const int Y = blockIdx.x / ((dims.iVolX+g_volBlockX-1)/g_volBlockX) * g_volBlockY + threadIdx.y;
@@ -110,42 +101,45 @@ __global__ void dev_par3D_BP(void* D_volData, unsigned int volPitch, int startAn
return;
const int startZ = blockIdx.y * g_volBlockZ;
- int endZ = startZ + g_volBlockZ;
- if (endZ > dims.iVolZ)
- endZ = dims.iVolZ;
float fX = X - 0.5f*dims.iVolX + 0.5f;
float fY = Y - 0.5f*dims.iVolY + 0.5f;
float fZ = startZ - 0.5f*dims.iVolZ + 0.5f;
- for (int Z = startZ; Z < endZ; ++Z, fZ += 1.0f)
- {
+ float Z[ZSIZE];
+ for(int i=0; i < ZSIZE; i++)
+ Z[i] = 0.0f;
- float fVal = 0.0f;
+ {
float fAngle = startAngle + angleOffset + 0.5f;
for (int angle = startAngle; angle < endAngle; ++angle, fAngle += 1.0f)
{
- const float fCux = gC_Cux[angle];
- const float fCuy = gC_Cuy[angle];
- const float fCuz = gC_Cuz[angle];
- const float fCuc = gC_Cuc[angle];
- const float fCvx = gC_Cvx[angle];
- const float fCvy = gC_Cvy[angle];
- const float fCvz = gC_Cvz[angle];
- const float fCvc = gC_Cvc[angle];
+ float4 fCu = make_float4(gC_C[8*angle+0], gC_C[8*angle+1], gC_C[8*angle+2], gC_C[8*angle+3]);
+ float4 fCv = make_float4(gC_C[8*angle+4], gC_C[8*angle+5], gC_C[8*angle+6], gC_C[8*angle+7]);
- const float fU = fCuc + fX * fCux + fY * fCuy + fZ * fCuz;
- const float fV = fCvc + fX * fCvx + fY * fCvy + fZ * fCvz;
+ float fU = fCu.w + fX * fCu.x + fY * fCu.y + fZ * fCu.z;
+ float fV = fCv.w + fX * fCv.x + fY * fCv.y + fZ * fCv.z;
- fVal += tex3D(gT_par3DProjTexture, fU, fAngle, fV);
+ for (int idx = 0; idx < ZSIZE; ++idx) {
- }
+ float fVal = tex3D(gT_par3DProjTexture, fU, fAngle, fV);
+ Z[idx] += fVal;
+
+ fU += fCu.z;
+ fV += fCv.z;
+ }
- volData[(Z*dims.iVolY+Y)*volPitch+X] += fVal;
+ }
}
+ int endZ = ZSIZE;
+ if (endZ > dims.iVolZ - startZ)
+ endZ = dims.iVolZ - startZ;
+
+ for(int i=0; i < endZ; i++)
+ volData[((startZ+i)*dims.iVolY+Y)*volPitch+X] += Z[i];
}
// supersampling version
@@ -194,14 +188,14 @@ __global__ void dev_par3D_BP_SS(void* D_volData, unsigned int volPitch, int star
for (int angle = startAngle; angle < endAngle; ++angle, fAngle += 1.0f)
{
- const float fCux = gC_Cux[angle];
- const float fCuy = gC_Cuy[angle];
- const float fCuz = gC_Cuz[angle];
- const float fCuc = gC_Cuc[angle];
- const float fCvx = gC_Cvx[angle];
- const float fCvy = gC_Cvy[angle];
- const float fCvz = gC_Cvz[angle];
- const float fCvc = gC_Cvc[angle];
+ const float fCux = gC_C[8*angle+0];
+ const float fCuy = gC_C[8*angle+1];
+ const float fCuz = gC_C[8*angle+2];
+ const float fCuc = gC_C[8*angle+3];
+ const float fCvx = gC_C[8*angle+4];
+ const float fCvy = gC_C[8*angle+5];
+ const float fCvz = gC_C[8*angle+6];
+ const float fCvc = gC_C[8*angle+7];
float fXs = fX;
for (int iSubX = 0; iSubX < dims.iRaysPerVoxelDim; ++iSubX) {
@@ -240,26 +234,30 @@ bool Par3DBP_Array(cudaPitchedPtr D_volumeData,
angleCount = dims.iProjAngles - th;
// transfer angles to constant memory
- float* tmp = new float[dims.iProjAngles];
+ float* tmp = new float[8*dims.iProjAngles];
// NB: We increment angles at the end of the loop body.
-#define TRANSFER_TO_CONSTANT(expr,name) do { for (unsigned int i = 0; i < angleCount; ++i) tmp[i] = (expr) ; cudaMemcpyToSymbol(gC_##name, tmp, angleCount*sizeof(float), 0, cudaMemcpyHostToDevice); } while (0)
+
+ // TODO: Use functions from dims3d.cu for this:
+
+#define TRANSFER_TO_CONSTANT(expr,name) do { for (unsigned int i = 0; i < angleCount; ++i) tmp[8*i + name] = (expr) ; } while (0)
#define DENOM (angles[i].fRayX*angles[i].fDetUY*angles[i].fDetVZ - angles[i].fRayX*angles[i].fDetUZ*angles[i].fDetVY - angles[i].fRayY*angles[i].fDetUX*angles[i].fDetVZ + angles[i].fRayY*angles[i].fDetUZ*angles[i].fDetVX + angles[i].fRayZ*angles[i].fDetUX*angles[i].fDetVY - angles[i].fRayZ*angles[i].fDetUY*angles[i].fDetVX)
- TRANSFER_TO_CONSTANT( ( - (angles[i].fRayY*angles[i].fDetVZ - angles[i].fRayZ*angles[i].fDetVY)) / DENOM , Cux );
- TRANSFER_TO_CONSTANT( ( (angles[i].fRayX*angles[i].fDetVZ - angles[i].fRayZ*angles[i].fDetVX)) / DENOM , Cuy );
- TRANSFER_TO_CONSTANT( (- (angles[i].fRayX*angles[i].fDetVY - angles[i].fRayY*angles[i].fDetVX) ) / DENOM , Cuz );
- TRANSFER_TO_CONSTANT( (-(angles[i].fDetSY*angles[i].fDetVZ - angles[i].fDetSZ*angles[i].fDetVY)*angles[i].fRayX + (angles[i].fRayY*angles[i].fDetVZ - angles[i].fRayZ*angles[i].fDetVY)*angles[i].fDetSX - (angles[i].fRayY*angles[i].fDetSZ - angles[i].fRayZ*angles[i].fDetSY)*angles[i].fDetVX) / DENOM , Cuc );
+ TRANSFER_TO_CONSTANT( ( - (angles[i].fRayY*angles[i].fDetVZ - angles[i].fRayZ*angles[i].fDetVY)) / DENOM , 0 );
+ TRANSFER_TO_CONSTANT( ( (angles[i].fRayX*angles[i].fDetVZ - angles[i].fRayZ*angles[i].fDetVX)) / DENOM , 1 );
+ TRANSFER_TO_CONSTANT( (- (angles[i].fRayX*angles[i].fDetVY - angles[i].fRayY*angles[i].fDetVX) ) / DENOM , 2 );
+ TRANSFER_TO_CONSTANT( (-(angles[i].fDetSY*angles[i].fDetVZ - angles[i].fDetSZ*angles[i].fDetVY)*angles[i].fRayX + (angles[i].fRayY*angles[i].fDetVZ - angles[i].fRayZ*angles[i].fDetVY)*angles[i].fDetSX - (angles[i].fRayY*angles[i].fDetSZ - angles[i].fRayZ*angles[i].fDetSY)*angles[i].fDetVX) / DENOM , 3 );
- TRANSFER_TO_CONSTANT( ((angles[i].fRayY*angles[i].fDetUZ - angles[i].fRayZ*angles[i].fDetUY) ) / DENOM , Cvx );
- TRANSFER_TO_CONSTANT( (- (angles[i].fRayX*angles[i].fDetUZ - angles[i].fRayZ*angles[i].fDetUX) ) / DENOM , Cvy );
- TRANSFER_TO_CONSTANT( ((angles[i].fRayX*angles[i].fDetUY - angles[i].fRayY*angles[i].fDetUX) ) / DENOM , Cvz );
- TRANSFER_TO_CONSTANT( ((angles[i].fDetSY*angles[i].fDetUZ - angles[i].fDetSZ*angles[i].fDetUY)*angles[i].fRayX - (angles[i].fRayY*angles[i].fDetUZ - angles[i].fRayZ*angles[i].fDetUY)*angles[i].fDetSX + (angles[i].fRayY*angles[i].fDetSZ - angles[i].fRayZ*angles[i].fDetSY)*angles[i].fDetUX ) / DENOM , Cvc );
+ TRANSFER_TO_CONSTANT( ((angles[i].fRayY*angles[i].fDetUZ - angles[i].fRayZ*angles[i].fDetUY) ) / DENOM , 4 );
+ TRANSFER_TO_CONSTANT( (- (angles[i].fRayX*angles[i].fDetUZ - angles[i].fRayZ*angles[i].fDetUX) ) / DENOM , 5 );
+ TRANSFER_TO_CONSTANT( ((angles[i].fRayX*angles[i].fDetUY - angles[i].fRayY*angles[i].fDetUX) ) / DENOM , 6 );
+ TRANSFER_TO_CONSTANT( ((angles[i].fDetSY*angles[i].fDetUZ - angles[i].fDetSZ*angles[i].fDetUY)*angles[i].fRayX - (angles[i].fRayY*angles[i].fDetUZ - angles[i].fRayZ*angles[i].fDetUY)*angles[i].fDetSX + (angles[i].fRayY*angles[i].fDetSZ - angles[i].fRayZ*angles[i].fDetSY)*angles[i].fDetUX ) / DENOM , 7 );
#undef TRANSFER_TO_CONSTANT
#undef DENOM
+ cudaMemcpyToSymbol(gC_C, tmp, angleCount*8*sizeof(float), 0, cudaMemcpyHostToDevice);
delete[] tmp;
diff --git a/cuda/3d/util3d.cu b/cuda/3d/util3d.cu
index d85a928..537ed69 100644
--- a/cuda/3d/util3d.cu
+++ b/cuda/3d/util3d.cu
@@ -31,6 +31,8 @@ $Id$
#include "util3d.h"
#include "../2d/util.h"
+#include "../../include/astra/Logging.h"
+
namespace astraCUDA3d {
@@ -46,7 +48,7 @@ cudaPitchedPtr allocateVolumeData(const SDimensions3D& dims)
cudaError err = cudaMalloc3D(&volData, extentV);
if (err != cudaSuccess) {
astraCUDA::reportCudaError(err);
- fprintf(stderr, "Failed to allocate %dx%dx%d GPU buffer\n", dims.iVolX, dims.iVolY, dims.iVolZ);
+ ASTRA_ERROR("Failed to allocate %dx%dx%d GPU buffer", dims.iVolX, dims.iVolY, dims.iVolZ);
volData.ptr = 0;
// TODO: return 0 somehow?
}
@@ -65,7 +67,7 @@ cudaPitchedPtr allocateProjectionData(const SDimensions3D& dims)
cudaError err = cudaMalloc3D(&projData, extentP);
if (err != cudaSuccess) {
astraCUDA::reportCudaError(err);
- fprintf(stderr, "Failed to allocate %dx%dx%d GPU buffer\n", dims.iProjU, dims.iProjAngles, dims.iProjV);
+ ASTRA_ERROR("Failed to allocate %dx%dx%d GPU buffer", dims.iProjU, dims.iProjAngles, dims.iProjV);
projData.ptr = 0;
// TODO: return 0 somehow?
}
@@ -303,7 +305,7 @@ cudaArray* allocateVolumeArray(const SDimensions3D& dims)
cudaError err = cudaMalloc3DArray(&cuArray, &channelDesc, extentA);
if (err != cudaSuccess) {
astraCUDA::reportCudaError(err);
- fprintf(stderr, "Failed to allocate %dx%dx%d GPU array\n", dims.iVolX, dims.iVolY, dims.iVolZ);
+ ASTRA_ERROR("Failed to allocate %dx%dx%d GPU array", dims.iVolX, dims.iVolY, dims.iVolZ);
return 0;
}
@@ -321,7 +323,7 @@ cudaArray* allocateProjectionArray(const SDimensions3D& dims)
if (err != cudaSuccess) {
astraCUDA::reportCudaError(err);
- fprintf(stderr, "Failed to allocate %dx%dx%d GPU array\n", dims.iProjU, dims.iProjAngles, dims.iProjV);
+ ASTRA_ERROR("Failed to allocate %dx%dx%d GPU array", dims.iProjU, dims.iProjAngles, dims.iProjV);
return 0;
}
@@ -397,7 +399,7 @@ bool cudaTextForceKernelsCompletion()
cudaError_t returnedCudaError = cudaThreadSynchronize();
if(returnedCudaError != cudaSuccess) {
- fprintf(stderr, "Failed to force completion of cuda kernels: %d: %s.\n", returnedCudaError, cudaGetErrorString(returnedCudaError));
+ ASTRA_ERROR("Failed to force completion of cuda kernels: %d: %s.", returnedCudaError, cudaGetErrorString(returnedCudaError));
return false;
}
diff --git a/include/astra/AsyncAlgorithm.h b/include/astra/AsyncAlgorithm.h
index 2d5d31e..a3157fc 100644
--- a/include/astra/AsyncAlgorithm.h
+++ b/include/astra/AsyncAlgorithm.h
@@ -32,14 +32,12 @@ $Id$
#include "Config.h"
#include "Algorithm.h"
-#ifdef __linux__
-#define USE_PTHREADS
+#ifdef USE_PTHREADS
#include <pthread.h>
#else
#include <boost/thread.hpp>
#endif
-
namespace astra {
/**
@@ -75,10 +73,6 @@ public:
*/
virtual void run(int _iNrIterations = 0);
- /** Wait for thread to complete and delete thread.
- */
- virtual void timedJoin(int _milliseconds);
-
/** Return pointer to the wrapped algorithm.
*/
CAlgorithm* getWrappedAlgorithm() { return m_pAlg; }
diff --git a/include/astra/ConeProjectionGeometry3D.h b/include/astra/ConeProjectionGeometry3D.h
index 9ef5fc0..00e72ce 100644
--- a/include/astra/ConeProjectionGeometry3D.h
+++ b/include/astra/ConeProjectionGeometry3D.h
@@ -40,8 +40,8 @@ namespace astra
* \par XML Configuration
* \astra_xml_item{DetectorRowCount, int, Number of detectors for each projection.}
* \astra_xml_item{DetectorColCount, int, Number of detectors for each projection.}
- * \astra_xml_item{DetectorWidth, float, Width of each detector.}
- * \astra_xml_item{DetectorHeight, float, Width of each detector.}
+ * \astra_xml_item{DetectorSpacingX, float, Width of each detector.}
+ * \astra_xml_item{DetectorSpacingY, float, Width of each detector.}
* \astra_xml_item{ProjectionAngles, vector of float, projection angles in radians.}
* \astra_xml_item{DistanceOriginDetector, float, Distance between the center of rotation and the detectorarray.}
* \astra_xml_item{DistanceOriginSource, float, Distance between the center of rotation the the x-ray source.}
@@ -51,8 +51,8 @@ namespace astra
* proj_geom = astra_struct('cone');\n
* proj_geom.DetectorRowCount = 512;\n
* proj_geom.DetectorColCount = 512;\n
- * proj_geom.DetectorWidth = 1.0;\n
- * proj_geom.DetectorHeight = 1.0;\n
+ * proj_geom.DetectorSpacingX = 1.0;\n
+ * proj_geom.DetectorSpacingY = 1.0;\n
* proj_geom.ProjectionAngles = linspace(0,pi,100);\n
* proj_geom.DistanceOriginDetector = 10000;\n
* proj_geom.DistanceOriginSource = 10000;\n
@@ -148,6 +148,12 @@ public:
*/
virtual bool isEqual(const CProjectionGeometry3D*) const;
+ /** Get all settings in a Config object.
+ *
+ * @return Configuration Object.
+ */
+ virtual Config* getConfiguration() const;
+
/** Returns true if the type of geometry defined in this class is the one specified in _sType.
*
* @param _sType geometry type to compare to.
@@ -155,12 +161,6 @@ public:
*/
virtual bool isOfType(const std::string& _sType) const;
- /** Turn this object into an XML object.
- *
- * @param _sNode The XML object to fill.
- */
- virtual void toXML(XMLNode* _sNode) const;
-
/** Returns the distance from the origin of the coordinate system to the source.
*
* @return Distance from the origin of the coordinate system to the source
@@ -185,6 +185,11 @@ public:
* Returns a vector giving the projection direction for a projection and detector index
*/
virtual CVector3D getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex) const;
+
+ virtual void projectPoint(float32 fX, float32 fY, float32 fZ,
+ int iAngleIndex,
+ float32 &fU, float32 &fV) const;
+
};
// Returns the distance from the origin of the coordinate system to the source.
diff --git a/include/astra/ConeVecProjectionGeometry3D.h b/include/astra/ConeVecProjectionGeometry3D.h
index 75ffa12..71e8010 100644
--- a/include/astra/ConeVecProjectionGeometry3D.h
+++ b/include/astra/ConeVecProjectionGeometry3D.h
@@ -30,7 +30,7 @@ $Id$
#define _INC_ASTRA_CONEVECPROJECTIONGEOMETRY3D
#include "ProjectionGeometry3D.h"
-#include "../cuda/3d/dims3d.h"
+#include "GeometryUtil3D.h"
namespace astra
{
@@ -56,7 +56,7 @@ namespace astra
* to a single projection, and consists of:
* ( srcX, srcY, srcZ, dX, dY, dZ, uX, uY, uZ, vX, vY, vZ )
* src: the ray source
- * d : the corner of the detector
+ * d : the centre of the detector plane
* u : the vector from detector pixel (0,0) to (0,1)
* v : the vector from detector pixel (0,0) to (1,0)
*/
@@ -128,6 +128,12 @@ public:
*/
virtual bool isEqual(const CProjectionGeometry3D*) const;
+ /** Get all settings in a Config object.
+ *
+ * @return Configuration Object.
+ */
+ virtual Config* getConfiguration() const;
+
/** Returns true if the type of geometry defined in this class is the one specified in _sType.
*
* @param _sType geometry type to compare to.
@@ -135,18 +141,16 @@ public:
*/
virtual bool isOfType(const std::string& _sType) const;
- /** Turn this object into an XML object.
- *
- * @param _sNode The XML object to fill.
- */
- virtual void toXML(XMLNode* _sNode) const;
-
/**
* Returns a vector giving the projection direction for a projection and detector index
*/
virtual CVector3D getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex) const;
const SConeProjection* getProjectionVectors() const { return m_pProjectionAngles; }
+
+ virtual void projectPoint(float32 fX, float32 fY, float32 fZ,
+ int iAngleIndex,
+ float32 &fU, float32 &fV) const;
};
} // namespace astra
diff --git a/include/astra/Config.h b/include/astra/Config.h
index 647462b..9893c90 100644
--- a/include/astra/Config.h
+++ b/include/astra/Config.h
@@ -31,6 +31,7 @@ $Id$
#include "Globals.h"
#include "XMLNode.h"
+#include "XMLDocument.h"
#include <set>
@@ -46,6 +47,8 @@ struct _AstraExport Config {
Config(XMLNode* _self);
~Config();
+ void initialize(std::string rootname);
+
XMLNode* self;
XMLNode* global;
};
diff --git a/include/astra/FanFlatProjectionGeometry2D.h b/include/astra/FanFlatProjectionGeometry2D.h
index 8f22c35..180fe68 100644
--- a/include/astra/FanFlatProjectionGeometry2D.h
+++ b/include/astra/FanFlatProjectionGeometry2D.h
@@ -140,6 +140,12 @@ public:
*/
virtual bool isOfType(const std::string& _sType);
+ /** Get all settings in a Config object.
+ *
+ * @return Configuration Object.
+ */
+ virtual Config* getConfiguration() const;
+
/** Return true if this geometry instance is the same as the one specified.
*
* @return true if this geometry instance is the same as the one specified.
diff --git a/include/astra/FanFlatVecProjectionGeometry2D.h b/include/astra/FanFlatVecProjectionGeometry2D.h
index 85c994f..d93de79 100644
--- a/include/astra/FanFlatVecProjectionGeometry2D.h
+++ b/include/astra/FanFlatVecProjectionGeometry2D.h
@@ -30,13 +30,10 @@ $Id$
#define _INC_ASTRA_FANFLATVECPROJECTIONGEOMETRY2D
#include "ProjectionGeometry2D.h"
-#include "../cuda/2d/dims.h"
+#include "GeometryUtil2D.h"
#include <cmath>
-// FIXME: Avoid using
-using astraCUDA::SFanProjection;
-
namespace astra
{
@@ -53,6 +50,14 @@ namespace astra
* proj_geom.DetectorCount = 512;\n
* proj_geom.Vectors = V;\n
* }
+ *
+ * \par Vectors
+ * Vectors is a matrix containing the actual geometry. Each row corresponds
+ * to a single projection, and consists of:
+ * ( srcX, srcY, srcZ, dX, dY uX, uY)
+ * src: the ray source
+ * d : the centre of the detector array
+ * u : the vector from detector 0 to detector 1
*/
class _AstraExport CFanFlatVecProjectionGeometry2D : public CProjectionGeometry2D
{
@@ -126,6 +131,13 @@ public:
*/
virtual bool isEqual(CProjectionGeometry2D*) const;
+ /** Get all settings in a Config object.
+ *
+ * @return Configuration Object.
+ */
+ virtual Config* getConfiguration() const;
+
+
/** Get the value for t and theta, based upon the row and column index.
*
* @param _iRow row index
diff --git a/src/Logger.cpp b/include/astra/GeometryUtil2D.h
index 148e18c..d4ee92e 100644
--- a/src/Logger.cpp
+++ b/include/astra/GeometryUtil2D.h
@@ -26,52 +26,22 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
$Id$
*/
-#include <astra/Logger.h>
+#ifndef _INC_ASTRA_GEOMETRYUTIL2D
+#define _INC_ASTRA_GEOMETRYUTIL2D
-using namespace astra;
+namespace astra {
-const char * g_loggerFileName = "astra_logger.txt";
+struct SFanProjection {
+ // the source
+ float fSrcX, fSrcY;
-void CLogger::_assureIsInitialized()
-{
- if(!m_bInitialized)
- {
- m_pOutFile = fopen(g_loggerFileName, "r");
- if(m_pOutFile != NULL)
- {
- // file exists, users wants to log
- fclose(m_pOutFile);
- m_pOutFile = fopen(g_loggerFileName, "w");
- }
+ // the start of the (linear) detector
+ float fDetSX, fDetSY;
- m_bInitialized = true;
- }
-}
-
-void CLogger::writeLine(const char * _text)
-{
- _assureIsInitialized();
-
- if(m_pOutFile != NULL)
- {
- fprintf(m_pOutFile, "%s\n", _text);
- fflush(m_pOutFile);
- }
-}
-
-void CLogger::writeTerminalCUDAError(const char * _fileName, int _iLine, const char * _errString)
-{
- char buffer[256];
-
- sprintf(buffer, "Cuda error in file '%s' in line %i : %s.", _fileName, _iLine, _errString);
-
- writeLine(buffer);
-}
+ // the length of a single detector pixel
+ float fDetUX, fDetUY;
+};
-CLogger::CLogger()
-{
- ;
}
-FILE * CLogger::m_pOutFile = NULL;
-bool CLogger::m_bInitialized = false;
+#endif
diff --git a/include/astra/GeometryUtil3D.h b/include/astra/GeometryUtil3D.h
new file mode 100644
index 0000000..698372e
--- /dev/null
+++ b/include/astra/GeometryUtil3D.h
@@ -0,0 +1,73 @@
+/*
+-----------------------------------------------------------------------
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
+
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+
+This file is part of the ASTRA Toolbox.
+
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#ifndef _INC_ASTRA_GEOMETRYUTIL3D
+#define _INC_ASTRA_GEOMETRYUTIL3D
+
+namespace astra {
+
+struct SConeProjection {
+ // the source
+ double fSrcX, fSrcY, fSrcZ;
+
+ // the origin ("bottom left") of the (flat-panel) detector
+ double fDetSX, fDetSY, fDetSZ;
+
+ // the U-edge of a detector pixel
+ double fDetUX, fDetUY, fDetUZ;
+
+ // the V-edge of a detector pixel
+ double fDetVX, fDetVY, fDetVZ;
+};
+
+struct SPar3DProjection {
+ // the ray direction
+ double fRayX, fRayY, fRayZ;
+
+ // the origin ("bottom left") of the (flat-panel) detector
+ double fDetSX, fDetSY, fDetSZ;
+
+ // the U-edge of a detector pixel
+ double fDetUX, fDetUY, fDetUZ;
+
+ // the V-edge of a detector pixel
+ double fDetVX, fDetVY, fDetVZ;
+};
+
+void computeBP_UV_Coeffs(const SPar3DProjection& proj,
+ double &fUX, double &fUY, double &fUZ, double &fUC,
+ double &fVX, double &fVY, double &fVZ, double &fVC);
+
+void computeBP_UV_Coeffs(const SConeProjection& proj,
+ double &fUX, double &fUY, double &fUZ, double &fUC,
+ double &fVX, double &fVY, double &fVZ, double &fVC,
+ double &fDX, double &fDY, double &fDZ, double &fDC);
+
+}
+
+#endif
diff --git a/include/astra/Globals.h b/include/astra/Globals.h
index fdeaa23..9c8ddfb 100644
--- a/include/astra/Globals.h
+++ b/include/astra/Globals.h
@@ -306,4 +306,11 @@ _AstraExport inline bool cudaEnabled() { return false; }
#endif
+//----------------------------------------------------------------------------------------
+// use pthreads on Linux and OSX
+#if defined(__linux__) || defined(__MACH__)
+#define USE_PTHREADS
+#endif
+
+
#endif
diff --git a/include/astra/Logger.h b/include/astra/Logger.h
deleted file mode 100644
index 34fd364..0000000
--- a/include/astra/Logger.h
+++ /dev/null
@@ -1,72 +0,0 @@
-/*
------------------------------------------------------------------------
-Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
- 2014-2015, CWI, Amsterdam
-
-Contact: astra@uantwerpen.be
-Website: http://sf.net/projects/astra-toolbox
-
-This file is part of the ASTRA Toolbox.
-
-
-The ASTRA Toolbox is free software: you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation, either version 3 of the License, or
-(at your option) any later version.
-
-The ASTRA Toolbox is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License
-along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
-
------------------------------------------------------------------------
-$Id$
-*/
-
-#ifndef _INC_ASTRA_LOGGER
-#define _INC_ASTRA_LOGGER
-
-#include <cstdio>
-
-namespace astra
-{
-
-/**
- * This is the first stab at a decent logger. If the file "astra_logger.txt", it will be replaced
- * with the text sent to this logger. If the file doesn't exist when the app starts, nothing is written.
- */
-class CLogger
-{
- static std::FILE * m_pOutFile;
- static bool m_bInitialized;
-
- static void _assureIsInitialized();
-
- CLogger();
-
-public:
-
- /**
- * Writes a line to the log file (newline is added). Ignored if logging is turned off.
- *
- * @param _text char pointer to text in line
- */
- static void writeLine(const char * _text);
-
- /**
- * Formats and writes a CUDA error to the log file. Ignored if logging is turned off.
- *
- * @param _fileName filename where error occurred (typically __FILE__)
- * @param _line line in file (typically __LINE__)
- * @param _errString string describing the error, can be output of cudaGetErrorString
- */
- static void writeTerminalCUDAError(const char * _fileName, int _iLine, const char * _errString);
-};
-
-}
-
-#endif /* _INC_ASTRA_LOGGER */
-
diff --git a/include/astra/Logging.h b/include/astra/Logging.h
new file mode 100644
index 0000000..8e19ea4
--- /dev/null
+++ b/include/astra/Logging.h
@@ -0,0 +1,159 @@
+/*
+-----------------------------------------------------------------------
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
+
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+
+This file is part of the ASTRA Toolbox.
+
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#ifndef _INC_ASTRA_LOGGING
+#define _INC_ASTRA_LOGGING
+
+#include "astra/Globals.h"
+
+#define ASTRA_DEBUG(...) astra::CLogger::debug(__FILE__,__LINE__, __VA_ARGS__)
+#define ASTRA_INFO(...) astra::CLogger::info(__FILE__,__LINE__, __VA_ARGS__)
+#define ASTRA_WARN(...) astra::CLogger::warn(__FILE__,__LINE__, __VA_ARGS__)
+#define ASTRA_ERROR(...) astra::CLogger::error(__FILE__,__LINE__, __VA_ARGS__)
+
+namespace astra
+{
+
+enum log_level {
+ LOG_DEBUG,
+ LOG_INFO,
+ LOG_WARN,
+ LOG_ERROR
+};
+
+class _AstraExport CLogger
+{
+ CLogger();
+ ~CLogger();
+ static bool m_bEnabledFile;
+ static bool m_bEnabledScreen;
+ static bool m_bFileProvided;
+ static bool m_bInitialized;
+ static void _assureIsInitialized();
+ static void _setLevel(int id, log_level m_eLevel);
+
+public:
+
+ /**
+ * Writes a line to the log file (newline is added). Ignored if logging is turned off.
+ *
+ * @param sfile
+ * The name of the source file making this log call (e.g. __FILE__).
+ *
+ * @param sline
+ * The line number of the call in the source code (e.g. __LINE__).
+ *
+ * @param id
+ * The id of the logger to write to.
+ *
+ * @param fmt
+ * The format string for the message (printf formatting).
+ *
+ * @param ...
+ * Any additional format arguments.
+ */
+ static void debug(const char *sfile, int sline, const char *fmt, ...);
+ static void info(const char *sfile, int sline, const char *fmt, ...);
+ static void warn(const char *sfile, int sline, const char *fmt, ...);
+ static void error(const char *sfile, int sline, const char *fmt, ...);
+
+ /**
+ * Sets the file to log to, with logging level.
+ *
+ * @param filename
+ * File to log to.
+ *
+ * @param m_eLevel
+ * Logging level (LOG_DEBUG, LOG_WARN, LOG_INFO, LOG_ERROR).
+ *
+ */
+ static void setOutputFile(const char *filename, log_level m_eLevel);
+
+ /**
+ * Sets the screen to log to, with logging level.
+ *
+ * @param screen_fd
+ * Screen file descriptor (1 for stdout, 2 for stderr)
+ *
+ * @param m_eLevel
+ * Logging level (LOG_DEBUG, LOG_WARN, LOG_INFO, LOG_ERROR).
+ *
+ */
+ static void setOutputScreen(int fd, log_level m_eLevel);
+
+ /**
+ * Set the format string for log messages. Here are the substitutions you may
+ * use:
+ *
+ * %f: Source file name generating the log call.
+ * %n: Source line number where the log call was made.
+ * %m: The message text sent to the logger (after printf formatting).
+ * %d: The current date, formatted using the logger's date format.
+ * %t: The current time, formatted using the logger's time format.
+ * %l: The log level (one of "DEBUG", "INFO", "WARN", or "ERROR").
+ * %%: A literal percent sign.
+ *
+ * The default format string is "%d %t %f(%n): %l: %m\n".
+ *
+ * @param fmt
+ * The new format string, which must be less than 256 bytes.
+ * You probably will want to end this with a newline (\n).
+ *
+ */
+ static void setFormatFile(const char *fmt);
+ static void setFormatScreen(const char *fmt);
+
+
+ /**
+ * Enable logging.
+ *
+ */
+ static void enable();
+ static void enableScreen();
+ static void enableFile();
+
+ /**
+ * Disable logging.
+ *
+ */
+ static void disable();
+ static void disableScreen();
+ static void disableFile();
+
+ /**
+ * Set callback function for logging to screen.
+ * @return whether callback was set succesfully.
+ *
+ */
+ static bool setCallbackScreen(void (*cb)(const char *msg, size_t len));
+
+};
+
+}
+
+#endif /* _INC_ASTRA_LOGGING */
diff --git a/include/astra/ParallelProjectionGeometry2D.h b/include/astra/ParallelProjectionGeometry2D.h
index ed9d228..2f7d36f 100644
--- a/include/astra/ParallelProjectionGeometry2D.h
+++ b/include/astra/ParallelProjectionGeometry2D.h
@@ -136,6 +136,12 @@ public:
*/
virtual bool isOfType(const std::string& _sType);
+ /** Get all settings in a Config object.
+ *
+ * @return Configuration Object.
+ */
+ virtual Config* getConfiguration() const;
+
/**
* Returns a vector describing the direction of a ray belonging to a certain detector,
* the direction is the same for all detectors in one projection
diff --git a/include/astra/ParallelProjectionGeometry3D.h b/include/astra/ParallelProjectionGeometry3D.h
index 9d61daa..72401e5 100644
--- a/include/astra/ParallelProjectionGeometry3D.h
+++ b/include/astra/ParallelProjectionGeometry3D.h
@@ -41,8 +41,8 @@ namespace astra
* \par XML Configuration
* \astra_xml_item{DetectorRowCount, int, Number of detectors for each projection.}
* \astra_xml_item{DetectorColCount, int, Number of detectors for each projection.}
- * \astra_xml_item{DetectorWidth, float, Width of each detector.}
- * \astra_xml_item{DetectorHeight, float, Width of each detector.}
+ * \astra_xml_item{DetectorSpacingX, float, Width of each detector.}
+ * \astra_xml_item{DetectorSpacingY, float, Width of each detector.}
* \astra_xml_item{ProjectionAngles, vector of float, projection angles in radians.}
*
* \par MATLAB example
@@ -50,8 +50,8 @@ namespace astra
* proj_geom = astra_struct('parallel');\n
* proj_geom.DetectorRowCount = 512;\n
* proj_geom.DetectorColCount = 512;\n
- * proj_geom.DetectorWidth = 1.0;\n
- * proj_geom.DetectorHeight = 1.0;\n
+ * proj_geom.DetectorSpacingX = 1.0;\n
+ * proj_geom.DetectorSpacingY = 1.0;\n
* proj_geom.ProjectionAngles = linspace(0,pi,100);\n
* }
*/
@@ -129,6 +129,12 @@ public:
*/
virtual bool isEqual(const CProjectionGeometry3D*) const;
+ /** Get all settings in a Config object.
+ *
+ * @return Configuration Object.
+ */
+ virtual Config* getConfiguration() const;
+
/** Returns true if the type of geometry defined in this class is the one specified in _sType.
*
* @param _sType geometry type to compare to.
@@ -136,17 +142,15 @@ public:
*/
virtual bool isOfType(const std::string& _sType) const;
- /** Turn this object into an XML object.
- *
- * @param _sNode The XML object to fill.
- */
- virtual void toXML(XMLNode* _sNode) const;
-
/**
* Returns a vector giving the projection direction for a projection and detector index
*/
virtual CVector3D getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex) const;
+ virtual void projectPoint(float32 fX, float32 fY, float32 fZ,
+ int iAngleIndex,
+ float32 &fU, float32 &fV) const;
+
/**
* Creates (= allocates) a 2D projection geometry used when projecting one slice using a 2D projector
*
diff --git a/include/astra/ParallelVecProjectionGeometry3D.h b/include/astra/ParallelVecProjectionGeometry3D.h
index 12365a1..59238c8 100644
--- a/include/astra/ParallelVecProjectionGeometry3D.h
+++ b/include/astra/ParallelVecProjectionGeometry3D.h
@@ -30,7 +30,7 @@ $Id$
#define _INC_ASTRA_PARALLELVECPROJECTIONGEOMETRY3D
#include "ProjectionGeometry3D.h"
-#include "../cuda/3d/dims3d.h"
+#include "GeometryUtil3D.h"
namespace astra
{
@@ -55,7 +55,7 @@ namespace astra
* to a single projection, and consists of:
* ( rayX, rayY, rayZ, dX, dY, dZ, uX, uY, uZ, vX, vY, vZ )
* ray: the ray direction
- * d : the corner of the detector
+ * d : the centre of the detector plane
* u : the vector from detector pixel (0,0) to (0,1)
* v : the vector from detector pixel (0,0) to (1,0)
*/
@@ -128,6 +128,12 @@ public:
*/
virtual bool isEqual(const CProjectionGeometry3D*) const;
+ /** Get all settings in a Config object.
+ *
+ * @return Configuration Object.
+ */
+ virtual Config* getConfiguration() const;
+
/** Returns true if the type of geometry defined in this class is the one specified in _sType.
*
* @param _sType geometry type to compare to.
@@ -135,12 +141,6 @@ public:
*/
virtual bool isOfType(const std::string& _sType) const;
- /** Turn this object into an XML object.
- *
- * @param _sNode The XML object to fill.
- */
- virtual void toXML(XMLNode* _sNode) const;
-
/**
* Returns a vector giving the projection direction for a projection and detector index
*/
@@ -149,7 +149,9 @@ public:
const SPar3DProjection* getProjectionVectors() const { return m_pProjectionAngles; }
-
+ virtual void projectPoint(float32 fX, float32 fY, float32 fZ,
+ int iAngleIndex,
+ float32 &fU, float32 &fV) const;
};
} // namespace astra
diff --git a/include/astra/ProjectionGeometry2D.h b/include/astra/ProjectionGeometry2D.h
index 303ca0a..b8324e2 100644
--- a/include/astra/ProjectionGeometry2D.h
+++ b/include/astra/ProjectionGeometry2D.h
@@ -157,6 +157,12 @@ public:
*/
virtual bool isEqual(CProjectionGeometry2D*) const = 0;
+ /** Get all settings in a Config object.
+ *
+ * @return Configuration Object.
+ */
+ virtual Config* getConfiguration() const = 0;
+
/** Get the number of projection angles.
*
* @return Number of projection angles
diff --git a/include/astra/ProjectionGeometry3D.h b/include/astra/ProjectionGeometry3D.h
index 6bc9368..19ac3ab 100644
--- a/include/astra/ProjectionGeometry3D.h
+++ b/include/astra/ProjectionGeometry3D.h
@@ -187,6 +187,12 @@ public:
*/
virtual bool isEqual(const CProjectionGeometry3D *) const = 0;
+ /** Get all settings in a Config object.
+ *
+ * @return Configuration Object.
+ */
+ virtual Config* getConfiguration() const = 0;
+
/** Get the number of projections.
*
* @return Number of projections
@@ -298,10 +304,23 @@ public:
*
* @param _iIndex the index of the detector.
* @param _iAngleIndex output: index of angle
- * @param _iDetectorIndex output: index of dectecor
+ * @param _iDetectorIndex output: index of detector
*/
virtual void indexToAngleDetectorIndex(int _iIndex, int& _iAngleIndex, int& _iDetectorIndex) const;
+ /** Project a point onto the detector. The 3D point coordinates
+ * are in units. The output fU,fV are the (unrounded) indices of the
+ * detector column and row.
+ * This may fall outside of the actual detector.
+ *
+ * @param fX,fY,fZ coordinates of the point to project
+ * @param iAngleIndex the index of the angle to use
+ * @param fU,fV the projected point.
+ */
+ virtual void projectPoint(float32 fX, float32 fY, float32 fZ,
+ int iAngleIndex,
+ float32 &fU, float32 &fV) const = 0;
+
/** Returns true if the type of geometry defined in this class is the one specified in _sType.
*
* @param _sType geometry type to compare to.
@@ -309,12 +328,6 @@ public:
*/
virtual bool isOfType(const std::string& _sType) const = 0;
- /** Turn this object into an XML object.
- *
- * @param _sNode The XML object to fill.
- */
- virtual void toXML(XMLNode* _sNode) const = 0;
-
/**
* Returns a vector giving the projection direction for a projection and detector index
*/
diff --git a/include/astra/Projector3D.h b/include/astra/Projector3D.h
index e1f0646..1ef1ba7 100644
--- a/include/astra/Projector3D.h
+++ b/include/astra/Projector3D.h
@@ -34,13 +34,13 @@ $Id$
#include "Globals.h"
#include "Config.h"
-#include "ProjectionGeometry3D.h"
-#include "VolumeGeometry3D.h"
namespace astra
{
class CSparseMatrix;
+class CProjectionGeometry3D;
+class CVolumeGeometry3D;
/** This is a base interface class for a three-dimensional projector. Each subclass should at least
diff --git a/include/astra/SparseMatrixProjectionGeometry2D.h b/include/astra/SparseMatrixProjectionGeometry2D.h
index 36964be..d56f95e 100644
--- a/include/astra/SparseMatrixProjectionGeometry2D.h
+++ b/include/astra/SparseMatrixProjectionGeometry2D.h
@@ -103,7 +103,6 @@ public:
* @param _pMatrix Pointer to a CSparseMatrix. The caller is responsible for keeping this matrix valid until it is no longer required.
* @return initialization successful?
*/
-
bool setMatrix(CSparseMatrix* _pMatrix);
/** Get a pointer to the associated sparse matrix.
@@ -128,6 +127,13 @@ public:
*/
virtual bool isOfType(const std::string& _sType);
+ /** Get all settings in a Config object.
+ *
+ * @return Configuration Object.
+ */
+ virtual Config* getConfiguration() const;
+
+
/**
* Returns a vector describing the direction of a ray belonging to a certain detector
*
diff --git a/include/astra/VolumeGeometry2D.h b/include/astra/VolumeGeometry2D.h
index fa0528d..28703d5 100644
--- a/include/astra/VolumeGeometry2D.h
+++ b/include/astra/VolumeGeometry2D.h
@@ -205,6 +205,12 @@ public:
*/
virtual bool isEqual(CVolumeGeometry2D*) const;
+ /** Get all settings in a Config object.
+ *
+ * @return Configuration Object.
+ */
+ virtual Config* getConfiguration() const;
+
/** Get the number of columns in the volume grid.
*
* @return Number of columns in the volume grid.
diff --git a/include/astra/VolumeGeometry3D.h b/include/astra/VolumeGeometry3D.h
index d5c8fff..ff94844 100644
--- a/include/astra/VolumeGeometry3D.h
+++ b/include/astra/VolumeGeometry3D.h
@@ -246,6 +246,12 @@ public:
*/
virtual bool isEqual(const CVolumeGeometry3D*) const;
+ /** Get all settings in a Config object.
+ *
+ * @return Configuration Object.
+ */
+ virtual Config* getConfiguration() const;
+
/** Get the number of columns in the volume grid.
*
* @return Number of columns in the volume grid.
diff --git a/include/astra/XMLDocument.h b/include/astra/XMLDocument.h
index c6f1b9a..869e1a3 100644
--- a/include/astra/XMLDocument.h
+++ b/include/astra/XMLDocument.h
@@ -86,6 +86,9 @@ public:
*/
void saveToFile(string sFilename);
+ /** convert and XML DOM tree to a string
+ */
+ std::string toString();
private:
diff --git a/include/astra/clog.h b/include/astra/clog.h
new file mode 100644
index 0000000..6ffb660
--- /dev/null
+++ b/include/astra/clog.h
@@ -0,0 +1,693 @@
+/* clog: Extremely simple logger for C.
+ *
+ * Features:
+ * - Implemented purely as a single header file.
+ * - Create multiple loggers.
+ * - Four log levels (debug, info, warn, error).
+ * - Custom formats.
+ * - Fast.
+ *
+ * Dependencies:
+ * - Should conform to C89, C++98 (but requires vsnprintf, unfortunately).
+ * - POSIX environment.
+ *
+ * USAGE:
+ *
+ * Include this header in any file that wishes to write to logger(s). In
+ * exactly one file (per executable), define CLOG_MAIN first (e.g. in your
+ * main .c file).
+ *
+ * #define CLOG_MAIN
+ * #include "clog.h"
+ *
+ * This will define the actual objects that all the other units will use.
+ *
+ * Loggers are identified by integers (0 - 15). It's expected that you'll
+ * create meaningful constants and then refer to the loggers as such.
+ *
+ * Example:
+ *
+ * const int MY_LOGGER = 0;
+ *
+ * int main() {
+ * int r;
+ * r = clog_init_path(MY_LOGGER, "my_log.txt");
+ * if (r != 0) {
+ * fprintf(stderr, "Logger initialization failed.\n");
+ * return 1;
+ * }
+ * clog_info(CLOG(MY_LOGGER), "Hello, world!");
+ * clog_free(MY_LOGGER);
+ * return 0;
+ * }
+ *
+ * The CLOG macro used in the call to clog_info is a helper that passes the
+ * __FILE__ and __LINE__ parameters for you, so you don't have to type them
+ * every time. (It could be prettier with variadic macros, but that requires
+ * C99 or C++11 to be standards compliant.)
+ *
+ * Errors encountered by clog will be printed to stderr. You can suppress
+ * these by defining a macro called CLOG_SILENT before including clog.h.
+ *
+ * License: Do whatever you want. It would be nice if you contribute
+ * improvements as pull requests here:
+ *
+ * https://github.com/mmueller/clog
+ *
+ * Copyright 2013 Mike Mueller <mike@subfocal.net>.
+ *
+ * As is; no warranty is provided; use at your own risk.
+ */
+
+#ifndef __CLOG_H__
+#define __CLOG_H__
+
+#include <sys/types.h>
+#include <sys/stat.h>
+#include <errno.h>
+#include <fcntl.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <stdio.h>
+#include <string.h>
+#include <time.h>
+#ifndef _MSC_VER
+#include <unistd.h>
+#else
+#define WIN32_LEAN_AND_MEAN
+#include <windows.h>
+#include <io.h>
+#define open _open
+#define close _close
+#define write _write
+#define snprintf _snprintf
+#endif
+
+/* Number of loggers that can be defined. */
+#define CLOG_MAX_LOGGERS 16
+
+/* Format strings cannot be longer than this. */
+#define CLOG_FORMAT_LENGTH 256
+
+/* Formatted times and dates should be less than this length. If they are not,
+ * they will not appear in the log. */
+#define CLOG_DATETIME_LENGTH 256
+
+/* Default format strings. */
+#define CLOG_DEFAULT_FORMAT "%d %t %f(%n): %l: %m\n"
+#define CLOG_DEFAULT_DATE_FORMAT "%Y-%m-%d"
+#define CLOG_DEFAULT_TIME_FORMAT "%H:%M:%S"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+enum clog_level {
+ CLOG_DEBUG,
+ CLOG_INFO,
+ CLOG_WARN,
+ CLOG_ERROR
+};
+
+struct clog;
+
+/**
+ * Create a new logger writing to the given file path. The file will always
+ * be opened in append mode.
+ *
+ * @param id
+ * A constant integer between 0 and 15 that uniquely identifies this logger.
+ *
+ * @param path
+ * Path to the file where log messages will be written.
+ *
+ * @return
+ * Zero on success, non-zero on failure.
+ */
+int clog_init_path(int id, const char *const path);
+
+/**
+ * Create a new logger writing to a file descriptor.
+ *
+ * @param id
+ * A constant integer between 0 and 15 that uniquely identifies this logger.
+ *
+ * @param fd
+ * The file descriptor where log messages will be written.
+ *
+ * @return
+ * Zero on success, non-zero on failure.
+ */
+int clog_init_fd(int id, int fd);
+
+/**
+ * Destroy (clean up) a logger. You should do this at the end of execution,
+ * or when you are done using the logger.
+ *
+ * @param id
+ * The id of the logger to destroy.
+ */
+void clog_free(int id);
+
+#define CLOG(id) __FILE__, __LINE__, id
+
+/**
+ * Log functions (one per level). Call these to write messages to the log
+ * file. The first three arguments can be replaced with a call to the CLOG
+ * macro defined above, e.g.:
+ *
+ * clog_debug(CLOG(MY_LOGGER_ID), "This is a log message.");
+ *
+ * @param sfile
+ * The name of the source file making this log call (e.g. __FILE__).
+ *
+ * @param sline
+ * The line number of the call in the source code (e.g. __LINE__).
+ *
+ * @param id
+ * The id of the logger to write to.
+ *
+ * @param fmt
+ * The format string for the message (printf formatting).
+ *
+ * @param ...
+ * Any additional format arguments.
+ */
+void clog_debug(const char *sfile, int sline, int id, const char *fmt, va_list ap);
+void clog_info(const char *sfile, int sline, int id, const char *fmt, va_list ap);
+void clog_warn(const char *sfile, int sline, int id, const char *fmt, va_list ap);
+void clog_error(const char *sfile, int sline, int id, const char *fmt, va_list ap);
+
+/**
+ * Set the minimum level of messages that should be written to the log.
+ * Messages below this level will not be written. By default, loggers are
+ * created with level == CLOG_DEBUG.
+ *
+ * @param id
+ * The identifier of the logger.
+ *
+ * @param level
+ * The new minimum log level.
+ *
+ * @return
+ * Zero on success, non-zero on failure.
+ */
+int clog_set_level(int id, enum clog_level level);
+
+/**
+ * Set the format string used for times. See strftime(3) for how this string
+ * should be defined. The default format string is CLOG_DEFAULT_TIME_FORMAT.
+ *
+ * @param fmt
+ * The new format string, which must be less than CLOG_FORMAT_LENGTH bytes.
+ *
+ * @return
+ * Zero on success, non-zero on failure.
+ */
+int clog_set_time_fmt(int id, const char *fmt);
+
+/**
+ * Set the format string used for dates. See strftime(3) for how this string
+ * should be defined. The default format string is CLOG_DEFAULT_DATE_FORMAT.
+ *
+ * @param fmt
+ * The new format string, which must be less than CLOG_FORMAT_LENGTH bytes.
+ *
+ * @return
+ * Zero on success, non-zero on failure.
+ */
+int clog_set_date_fmt(int id, const char *fmt);
+
+/**
+ * Set the format string for log messages. Here are the substitutions you may
+ * use:
+ *
+ * %f: Source file name generating the log call.
+ * %n: Source line number where the log call was made.
+ * %m: The message text sent to the logger (after printf formatting).
+ * %d: The current date, formatted using the logger's date format.
+ * %t: The current time, formatted using the logger's time format.
+ * %l: The log level (one of "DEBUG", "INFO", "WARN", or "ERROR").
+ * %%: A literal percent sign.
+ *
+ * The default format string is CLOG_DEFAULT_FORMAT.
+ *
+ * @param fmt
+ * The new format string, which must be less than CLOG_FORMAT_LENGTH bytes.
+ * You probably will want to end this with a newline (\n).
+ *
+ * @return
+ * Zero on success, non-zero on failure.
+ */
+int clog_set_fmt(int id, const char *fmt);
+
+/**
+ * Set the callback function.
+ *
+ * @param cb
+ * The new callback function.
+ *
+ * @return
+ * Zero on success, non-zero on failure.
+ */
+int clog_set_cb(int id, void (*cb)(const char *msg, size_t len));
+
+/**
+ * Set the file descriptor.
+ *
+ * @param id
+ * The identifier of the logger.
+ *
+ * @param fd
+ * The new file descriptor.
+ *
+ * @return
+ * Zero on success, non-zero on failure.
+ */
+int clog_set_fd(int id, int fd);
+
+
+/*
+ * No need to read below this point.
+ */
+
+/**
+ * The C logger structure.
+ */
+struct clog {
+
+ /* The current level of this logger. Messages below it will be dropped. */
+ enum clog_level level;
+
+ /* The file being written. */
+ int fd;
+
+ /* The format specifier. */
+ char fmt[CLOG_FORMAT_LENGTH];
+
+ /* Date format */
+ char date_fmt[CLOG_FORMAT_LENGTH];
+
+ /* Time format */
+ char time_fmt[CLOG_FORMAT_LENGTH];
+
+ /* Tracks whether the fd needs to be closed eventually. */
+ int opened;
+
+ /* Callback function for each log message. */
+ void (*cb)(const char *msg, size_t len);
+};
+
+void _clog_err(const char *fmt, ...);
+
+#ifdef CLOG_MAIN
+struct clog *_clog_loggers[CLOG_MAX_LOGGERS] = { 0 };
+#else
+extern struct clog *_clog_loggers[CLOG_MAX_LOGGERS];
+#endif
+
+#ifdef CLOG_MAIN
+
+const char *const CLOG_LEVEL_NAMES[] = {
+ "Debug",
+ "Info",
+ "Warning",
+ "Error",
+};
+
+int
+clog_init_path(int id, const char *const path)
+{
+ int fd = open(path, O_CREAT | O_WRONLY | O_APPEND, 0666);
+ if (fd == -1) {
+ _clog_err("Unable to open %s: %s\n", path, strerror(errno));
+ return 1;
+ }
+ if (clog_init_fd(id, fd)) {
+ close(fd);
+ return 1;
+ }
+ _clog_loggers[id]->opened = 1;
+ return 0;
+}
+
+int
+clog_init_fd(int id, int fd)
+{
+ struct clog *logger;
+
+ if (_clog_loggers[id] != NULL) {
+ _clog_err("Logger %d already initialized.\n", id);
+ return 1;
+ }
+
+ logger = (struct clog *) malloc(sizeof(struct clog));
+ if (logger == NULL) {
+ _clog_err("Failed to allocate logger: %s\n", strerror(errno));
+ return 1;
+ }
+
+ logger->level = CLOG_DEBUG;
+ logger->fd = fd;
+ logger->opened = 0;
+ strcpy(logger->fmt, CLOG_DEFAULT_FORMAT);
+ strcpy(logger->date_fmt, CLOG_DEFAULT_DATE_FORMAT);
+ strcpy(logger->time_fmt, CLOG_DEFAULT_TIME_FORMAT);
+ logger->cb = NULL;
+
+ _clog_loggers[id] = logger;
+ return 0;
+}
+
+void
+clog_free(int id)
+{
+ if (_clog_loggers[id]) {
+ if (_clog_loggers[id]->opened) {
+ close(_clog_loggers[id]->fd);
+ }
+ free(_clog_loggers[id]);
+ _clog_loggers[id]=NULL;
+ }
+}
+
+int
+clog_set_level(int id, enum clog_level level)
+{
+ if (_clog_loggers[id] == NULL) {
+ return 1;
+ }
+ if ((unsigned) level > CLOG_ERROR) {
+ return 1;
+ }
+ _clog_loggers[id]->level = level;
+ return 0;
+}
+
+int
+clog_set_fd(int id, int fd)
+{
+ if (_clog_loggers[id] == NULL) {
+ return 1;
+ }
+ _clog_loggers[id]->fd = fd;
+ return 0;
+}
+
+int
+clog_set_time_fmt(int id, const char *fmt)
+{
+ struct clog *logger = _clog_loggers[id];
+ if (logger == NULL) {
+ _clog_err("clog_set_time_fmt: No such logger: %d\n", id);
+ return 1;
+ }
+ if (strlen(fmt) >= CLOG_FORMAT_LENGTH) {
+ _clog_err("clog_set_time_fmt: Format specifier too long.\n");
+ return 1;
+ }
+ strcpy(logger->time_fmt, fmt);
+ return 0;
+}
+
+int
+clog_set_date_fmt(int id, const char *fmt)
+{
+ struct clog *logger = _clog_loggers[id];
+ if (logger == NULL) {
+ _clog_err("clog_set_date_fmt: No such logger: %d\n", id);
+ return 1;
+ }
+ if (strlen(fmt) >= CLOG_FORMAT_LENGTH) {
+ _clog_err("clog_set_date_fmt: Format specifier too long.\n");
+ return 1;
+ }
+ strcpy(logger->date_fmt, fmt);
+ return 0;
+}
+
+int
+clog_set_fmt(int id, const char *fmt)
+{
+ struct clog *logger = _clog_loggers[id];
+ if (logger == NULL) {
+ _clog_err("clog_set_fmt: No such logger: %d\n", id);
+ return 1;
+ }
+ if (strlen(fmt) >= CLOG_FORMAT_LENGTH) {
+ _clog_err("clog_set_fmt: Format specifier too long.\n");
+ return 1;
+ }
+ strcpy(logger->fmt, fmt);
+ return 0;
+}
+
+int
+clog_set_cb(int id, void (*cb)(const char *msg, size_t len))
+{
+ struct clog *logger = _clog_loggers[id];
+ if (logger == NULL) {
+ _clog_err("clog_set_cb: No such logger: %d\n", id);
+ return 1;
+ }
+ logger->cb = cb;
+ return 0;
+}
+
+/* Internal functions */
+
+size_t
+_clog_append_str(char **dst, char *orig_buf, const char *src, size_t cur_size)
+{
+ size_t new_size = cur_size;
+
+ while (strlen(*dst) + strlen(src) >= new_size) {
+ new_size *= 2;
+ }
+ if (new_size != cur_size) {
+ if (*dst == orig_buf) {
+ *dst = (char *) malloc(new_size);
+ strcpy(*dst, orig_buf);
+ } else {
+ *dst = (char *) realloc(*dst, new_size);
+ }
+ }
+
+ strcat(*dst, src);
+ return new_size;
+}
+
+size_t
+_clog_append_int(char **dst, char *orig_buf, long int d, size_t cur_size)
+{
+ char buf[40]; /* Enough for 128-bit decimal */
+ if (snprintf(buf, 40, "%ld", d) >= 40) {
+ return cur_size;
+ }
+ return _clog_append_str(dst, orig_buf, buf, cur_size);
+}
+
+size_t
+_clog_append_time(char **dst, char *orig_buf, struct tm *lt,
+ const char *fmt, size_t cur_size)
+{
+ char buf[CLOG_DATETIME_LENGTH];
+ size_t result = strftime(buf, CLOG_DATETIME_LENGTH, fmt, lt);
+
+ if (result > 0) {
+ return _clog_append_str(dst, orig_buf, buf, cur_size);
+ }
+
+ return cur_size;
+}
+
+const char *
+_clog_basename(const char *path)
+{
+ const char *slash = strrchr(path, '/');
+ if (slash) {
+ path = slash + 1;
+ }
+#ifdef _WIN32
+ slash = strrchr(path, '\\');
+ if (slash) {
+ path = slash + 1;
+ }
+#endif
+ return path;
+}
+
+char *
+_clog_format(const struct clog *logger, char buf[], size_t buf_size,
+ const char *sfile, int sline, const char *level,
+ const char *message)
+{
+ size_t cur_size = buf_size;
+ char *result = buf;
+ enum { NORMAL, SUBST } state = NORMAL;
+ size_t fmtlen = strlen(logger->fmt);
+ size_t i;
+ time_t t = time(NULL);
+ struct tm *lt = localtime(&t);
+
+ sfile = _clog_basename(sfile);
+ result[0] = 0;
+ for (i = 0; i < fmtlen; ++i) {
+ if (state == NORMAL) {
+ if (logger->fmt[i] == '%') {
+ state = SUBST;
+ } else {
+ char str[2] = { 0 };
+ str[0] = logger->fmt[i];
+ cur_size = _clog_append_str(&result, buf, str, cur_size);
+ }
+ } else {
+ switch (logger->fmt[i]) {
+ case '%':
+ cur_size = _clog_append_str(&result, buf, "%", cur_size);
+ break;
+ case 't':
+ cur_size = _clog_append_time(&result, buf, lt,
+ logger->time_fmt, cur_size);
+ break;
+ case 'd':
+ cur_size = _clog_append_time(&result, buf, lt,
+ logger->date_fmt, cur_size);
+ break;
+ case 'l':
+ cur_size = _clog_append_str(&result, buf, level, cur_size);
+ break;
+ case 'n':
+ cur_size = _clog_append_int(&result, buf, sline, cur_size);
+ break;
+ case 'f':
+ cur_size = _clog_append_str(&result, buf, sfile, cur_size);
+ break;
+ case 'm':
+ cur_size = _clog_append_str(&result, buf, message,
+ cur_size);
+ break;
+ }
+ state = NORMAL;
+ }
+ }
+
+ return result;
+}
+
+void
+_clog_log(const char *sfile, int sline, enum clog_level level,
+ int id, const char *fmt, va_list ap)
+{
+ /* For speed: Use a stack buffer until message exceeds 4096, then switch
+ * to dynamically allocated. This should greatly reduce the number of
+ * memory allocations (and subsequent fragmentation). */
+ char buf[4096];
+ size_t buf_size = 4096;
+ char *dynbuf = buf;
+ char *message;
+ int result;
+ struct clog *logger = _clog_loggers[id];
+
+ if (!logger) {
+ _clog_err("No such logger: %d\n", id);
+ return;
+ }
+
+ if (level < logger->level) {
+ return;
+ }
+
+ /* Format the message text with the argument list. */
+ result = vsnprintf(dynbuf, buf_size, fmt, ap);
+ if ((size_t) result >= buf_size) {
+ buf_size = result + 1;
+ dynbuf = (char *) malloc(buf_size);
+ result = vsnprintf(dynbuf, buf_size, fmt, ap);
+ if ((size_t) result >= buf_size) {
+ /* Formatting failed -- too large */
+ _clog_err("Formatting failed (1).\n");
+ free(dynbuf);
+ return;
+ }
+ }
+
+ /* Format according to log format and write to log */
+ {
+ char message_buf[4096];
+ message = _clog_format(logger, message_buf, 4096, sfile, sline,
+ CLOG_LEVEL_NAMES[level], dynbuf);
+ if (!message) {
+ _clog_err("Formatting failed (2).\n");
+ if (dynbuf != buf) {
+ free(dynbuf);
+ }
+ return;
+ }
+ result = write(logger->fd, message, strlen(message));
+ if (logger->cb) logger->cb(message,strlen(message));
+ if (result == -1) {
+ _clog_err("Unable to write to log file: %s\n", strerror(errno));
+ }
+ if (message != message_buf) {
+ free(message);
+ }
+ if (dynbuf != buf) {
+ free(dynbuf);
+ }
+#ifndef _MSC_VER
+ fsync(logger->fd);
+#else
+ HANDLE h = (HANDLE) _get_osfhandle(logger->fd);
+ if (h != INVALID_HANDLE_VALUE) {
+ // This call will fail on a console fd, but that's ok.
+ FlushFileBuffers(h);
+ }
+#endif
+ }
+}
+
+void
+clog_debug(const char *sfile, int sline, int id, const char *fmt, va_list ap)
+{
+ _clog_log(sfile, sline, CLOG_DEBUG, id, fmt, ap);
+}
+
+void
+clog_info(const char *sfile, int sline, int id, const char *fmt, va_list ap)
+{
+ _clog_log(sfile, sline, CLOG_INFO, id, fmt, ap);
+}
+
+void
+clog_warn(const char *sfile, int sline, int id, const char *fmt, va_list ap)
+{
+ _clog_log(sfile, sline, CLOG_WARN, id, fmt, ap);
+}
+
+void
+clog_error(const char *sfile, int sline, int id, const char *fmt, va_list ap)
+{
+ _clog_log(sfile, sline, CLOG_ERROR, id, fmt, ap);
+}
+
+void
+_clog_err(const char *fmt, ...)
+{
+#ifdef CLOG_SILENT
+ (void) fmt;
+#else
+ va_list ap;
+
+ va_start(ap, fmt);
+ vfprintf(stderr, fmt, ap);
+#endif
+}
+
+#endif /* CLOG_MAIN */
+
+#ifdef __cplusplus
+} /* extern "C" */
+#endif
+
+#endif /* __CLOG_H__ */
diff --git a/matlab/algorithms/DART/DARTalgorithm.m b/matlab/algorithms/DART/DARTalgorithm.m
index f8c2ce7..fc707dd 100644
--- a/matlab/algorithms/DART/DARTalgorithm.m
+++ b/matlab/algorithms/DART/DARTalgorithm.m
@@ -1,21 +1,16 @@
%--------------------------------------------------------------------------
% This file is part of the ASTRA Toolbox
%
-% Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
-% 2014-2015, CWI, Amsterdam
+% Copyright: 2010-2014, iMinds-Vision Lab, University of Antwerp
+% 2014, CWI, Amsterdam
% License: Open Source under GPLv3
% Contact: astra@uantwerpen.be
% Website: http://sf.net/projects/astra-toolbox
%--------------------------------------------------------------------------
classdef DARTalgorithm < matlab.mixin.Copyable
-
% Algorithm class for Discrete Algebraic Reconstruction Technique (DART).
- % todo: reset()
- % todo: fixed random seed
- % todo: initialize from settings (?)
-
%----------------------------------------------------------------------
properties (GetAccess=public, SetAccess=public)
@@ -78,7 +73,6 @@ classdef DARTalgorithm < matlab.mixin.Copyable
error('invalid arguments')
end
end
-
%------------------------------------------------------------------
function D = deepcopy(this)
@@ -100,7 +94,6 @@ classdef DARTalgorithm < matlab.mixin.Copyable
% Initialize tomography part
if ~this.tomography.initialized
- this.tomography.sinogram = this.base.sinogram;
this.tomography.proj_geom = this.base.proj_geom;
this.tomography.initialize();
end
@@ -110,7 +103,7 @@ classdef DARTalgorithm < matlab.mixin.Copyable
this.V0 = this.base.V0;
else
this.output.pre_initial_iteration(this);
- this.V0 = this.tomography.reconstruct2(this.base.sinogram, [], this.t0);
+ this.V0 = this.tomography.reconstruct(this.base.sinogram, this.t0);
this.output.post_initial_iteration(this);
end
this.V = this.V0;
@@ -163,7 +156,7 @@ classdef DARTalgorithm < matlab.mixin.Copyable
this.R = this.base.sinogram - this.tomography.project(F);
% ART update part
- this.V = this.tomography.reconstruct2_mask(this.R, this.V, this.Mask, this.t);
+ this.V = this.tomography.reconstruct_mask(this.R, this.V, this.Mask, this.t);
% blur
this.V = this.smoothing.apply(this, this.V);
diff --git a/matlab/algorithms/DART/IterativeTomography.m b/matlab/algorithms/DART/IterativeTomography.m
new file mode 100644
index 0000000..3875e6b
--- /dev/null
+++ b/matlab/algorithms/DART/IterativeTomography.m
@@ -0,0 +1,435 @@
+classdef IterativeTomography < matlab.mixin.Copyable
+
+ % Algorithm class for 2D Iterative Tomography.
+
+ %----------------------------------------------------------------------
+ properties (SetAccess=public, GetAccess=public)
+ superresolution = 1; % SETTING: Volume upsampling factor.
+ proj_type = 'linear'; % SETTING: Projector type, only when gpu='no'.
+ method = 'SIRT_CUDA'; % SETTING: Iterative method (see ASTRA toolbox documentation).
+ gpu = 'yes'; % SETTING: Use gpu? {'yes', 'no'}
+ gpu_core = 0; % SETTING: Which gpu core to use? Only when gpu='yes'.
+ inner_circle = 'yes'; % SETTING: Do roi only? {'yes', 'no'}
+ image_size = []; % SETTING: Overwrite default reconstruction size. Only if no vol_geom is specified.
+ use_minc = 'no'; % SETTING: Use minimum constraint. {'no', 'yes'}
+ end
+ %----------------------------------------------------------------------
+ properties (SetAccess=public, GetAccess=public)
+ proj_geom = []; % DATA: Projection geometry.
+ vol_geom = []; % DATA: Volume geometry.
+ end
+ %----------------------------------------------------------------------
+ properties (SetAccess=private, GetAccess=public)
+ initialized = 0; % Is this object initialized?
+ end
+ %----------------------------------------------------------------------
+ properties (SetAccess=protected, GetAccess=protected)
+ cfg_base = struct(); % PROTECTED: base configuration structure for the reconstruction algorithm.
+ proj_geom_sr = []; % PROTECTED: geometry of sinogram (with super-resolution)
+ proj_id = []; % PROTECTED: astra id of projector (when gpu='no')
+ proj_id_sr = []; % PROTECTED: astra id of super-resolution projector (when gpu='no')
+ end
+ %----------------------------------------------------------------------
+
+ methods (Access=public)
+
+ %------------------------------------------------------------------
+ function this = IterativeTomography(varargin)
+ % Constructor
+ % >> tomography = IterativeTomography(proj_geom);
+ % >> tomography = IterativeTomography(proj_geom, vol_geom);
+
+ % Input: IterativeTomography(proj_geom)
+ if nargin == 1
+ this.proj_geom = varargin{1};
+
+ % Input: IterativeTomography(proj_geom, vol_geom)
+ elseif nargin == 2
+ this.proj_geom = varargin{1};
+ this.vol_geom = varargin{2};
+ end
+ end
+
+ %------------------------------------------------------------------
+ function delete(this)
+ % Destructor
+ % >> clear tomography;
+ if strcmp(this.gpu,'no') && numel(this.proj_id) > 0
+ astra_mex_projector('delete', this.proj_id, this.proj_id_sr);
+ end
+ end
+
+ %------------------------------------------------------------------
+ function settings = getsettings(this)
+ % Returns a structure containing all settings of this object.
+ % >> settings = tomography.getsettings();
+ settings.superresolution = this.superresolution;
+ settings.proj_type = this.proj_type;
+ settings.method = this.method;
+ settings.gpu = this.gpu;
+ settings.gpu_core = this.gpu_core;
+ settings.inner_circle = this.inner_circle;
+ settings.image_size = this.image_size;
+ settings.use_minc = this.use_minc;
+ end
+
+ %------------------------------------------------------------------
+ function ok = initialize(this)
+ % Initialize this object. Returns 1 if succesful.
+ % >> tomography.initialize();
+
+ % create projection geometry with super-resolution
+ if this.superresolution > 1
+ this.proj_geom_sr = astra_geom_superresolution(this.proj_geom, this.superresolution);
+ else
+ this.proj_geom_sr = this.proj_geom;
+ end
+
+ % if no volume geometry is specified by the user: create volume geometry
+ if numel(this.vol_geom) == 0
+ if numel(this.image_size) < 2
+ this.image_size(1) = this.proj_geom.DetectorCount;
+ this.image_size(2) = this.proj_geom.DetectorCount;
+ end
+ this.vol_geom = astra_create_vol_geom(this.image_size(1) * this.superresolution, this.image_size(2) * this.superresolution, ...
+ -this.image_size(1)/2, this.image_size(1)/2, -this.image_size(2)/2, this.image_size(2)/2);
+ else
+ this.image_size(1) = this.vol_geom.GridRowCount;
+ this.image_size(2) = this.vol_geom.GridColCount;
+ end
+
+ % create projector
+ if strcmp(this.gpu,'no')
+ this.proj_id = astra_create_projector(this.proj_type, this.proj_geom, this.vol_geom);
+ this.proj_id_sr = astra_create_projector(this.proj_type, this.proj_geom_sr, this.vol_geom);
+ end
+
+ % create reconstruction configuration
+ this.cfg_base = astra_struct(upper(this.method));
+ if strcmp(this.gpu,'no')
+ this.cfg_base.ProjectorId = this.proj_id;
+ this.cfg_base.ProjectionGeometry = this.proj_geom;
+ this.cfg_base.ReconstructionGeometry = this.vol_geom;
+ end
+ this.cfg_base.option.DetectorSuperSampling = this.superresolution;
+ if strcmp(this.gpu,'yes')
+ this.cfg_base.option.GPUindex = this.gpu_core;
+ end
+ if this.use_minc
+ this.cfg_base.option.MinConstraint = 0;
+ end
+
+ this.initialized = 1;
+ ok = this.initialized;
+ end
+
+ %------------------------------------------------------------------
+ function projections = project(this, volume)
+ % Compute forward projection.
+ % >> projections = tomography.project(volume);
+
+ if ~this.initialized
+ this.initialize();
+ end
+
+ % project
+ projections = this.project_c(volume);
+ end
+
+ %------------------------------------------------------------------
+ function reconstruction = reconstruct(this, varargin)
+ % Compute reconstruction.
+ % Uses tomography.sinogram
+ % Initial solution (if available) should be stored in tomography.V
+ % >> reconstruction = tomography.reconstruct(projections, iterations);
+ % >> reconstruction = tomography.reconstruct(projections, volume0, iterations);
+
+ if ~this.initialized
+ this.initialize();
+ end
+
+ if numel(varargin) == 2
+ reconstruction = this.reconstruct_c(varargin{1}, [], [], varargin{2});
+ elseif numel(varargin) == 3
+ reconstruction = this.reconstruct_c(varargin{1}, varargin{2}, [], varargin{3});
+ else
+ error('invalid parameter list')
+ end
+
+ if strcmp(this.inner_circle,'yes')
+ reconstruction = this.selectROI(reconstruction);
+ end
+ end
+
+ %------------------------------------------------------------------
+ function reconstruction = reconstruct_mask(this, varargin)
+ % Compute reconstruction with mask.
+ % Uses tomography.sinogram
+ % Initial solution (if available) should be stored in tomography.V
+ % >> reconstruction = tomography.reconstructMask(projections, mask, iterations);
+ % >> reconstruction = tomography.reconstructMask(projections, volume0, mask, iterations);
+
+ if ~this.initialized
+ this.initialize();
+ end
+
+ if numel(varargin) == 3
+ reconstruction = this.reconstruct_c(varargin{1}, [], varargin{2}, varargin{3});
+ elseif numel(varargin) == 4
+ reconstruction = this.reconstruct_c(varargin{1}, varargin{2}, varargin{3}, varargin{4});
+ else
+ error('invalid parameter list')
+ end
+
+ if strcmp(this.inner_circle,'yes')
+ reconstruction = this.selectROI(reconstruction);
+ end
+
+ end
+ %------------------------------------------------------------------
+
+ end
+
+ %----------------------------------------------------------------------
+ methods (Access = protected)
+
+ %------------------------------------------------------------------
+ % Protected function: create FP
+ function sinogram = project_c(this, volume)
+
+ if this.initialized == 0
+ error('IterativeTomography not initialized');
+ end
+
+ % data is stored in astra memory
+ if numel(volume) == 1
+
+ if strcmp(this.gpu, 'yes')
+ sinogram_tmp = astra_create_sino_cuda(volume, this.proj_geom_sr, this.vol_geom, this.gpu_core);
+ else
+ sinogram_tmp = astra_create_sino(volume, this.proj_id);
+ end
+
+ % sinogram downsampling
+ if this.superresolution > 1
+ sinogram_data = astra_mex_data2d('get', sinogram_tmp);
+ astra_mex_data2d('delete', sinogram_tmp);
+ sinogram_data = downsample_sinogram(sinogram_data, this.superresolution);
+ sinogram = astra_mex_data2d('create','sino', this.proj_geom, sinogram_data);
+ else
+ sinogram = sinogram_tmp;
+ end
+
+ % data is stored in matlab memory
+ else
+
+ % 2D and 3D slice by slice
+ sinogram_tmp = zeros([astra_geom_size(this.proj_geom_sr), size(volume,3)]);
+ sinogram_tmp2 = zeros([astra_geom_size(this.proj_geom), size(volume,3)]);
+ for slice = 1:size(volume,3)
+
+ if strcmp(this.gpu, 'yes')
+ [tmp_id, sinogram_tmp2(:,:,slice)] = astra_create_sino_sampling(volume(:,:,slice), this.proj_geom, this.vol_geom, this.gpu_core, this.superresolution);
+ astra_mex_data2d('delete', tmp_id);
+ else
+ [tmp_id, tmp] = astra_create_sino(volume(:,:,slice), this.proj_id_sr);
+ sinogram_tmp2(:,:,slice) = downsample_sinogram(tmp, this.superresolution) * (this.superresolution^2);
+ astra_mex_data2d('delete', tmp_id);
+ end
+
+ end
+
+ % sinogram downsampling
+ if strcmp(this.gpu, 'yes')
+ %sinogram = downsample_sinogram(sinogram_tmp, this.superresolution);
+ sinogram2 = sinogram_tmp2;
+ if strcmp(this.proj_geom.type,'fanflat_vec') || strcmp(this.proj_geom.type,'fanflat')
+ sinogram2 = sinogram2 / this.superresolution;
+ elseif strcmp(this.proj_geom.type,'parallel')
+ sinogram2 = sinogram2 / (this.superresolution * this.superresolution);
+ end
+ sinogram = sinogram2;
+ else
+ sinogram = sinogram_tmp2;
+ end
+
+ end
+
+ end
+
+ %------------------------------------------------------------------
+ % Protected function: reconstruct
+ function V = reconstruct_c(this, sinogram, V0, mask, iterations)
+
+ if this.initialized == 0
+ error('IterativeTomography not initialized');
+ end
+
+ % data is stored in astra memory
+ if numel(sinogram) == 1
+ V = this.reconstruct_c_astra(sinogram, V0, mask, iterations);
+
+ % data is stored in matlab memory
+ else
+ V = this.reconstruct_c_matlab(sinogram, V0, mask, iterations);
+ end
+
+ end
+
+ %------------------------------------------------------------------
+ % Protected function: reconstruct (data in matlab)
+ function V = reconstruct_c_matlab(this, sinogram, V0, mask, iterations)
+
+ if this.initialized == 0
+ error('IterativeTomography not initialized');
+ end
+
+ % parse method
+ method2 = upper(this.method);
+ if strcmp(method2, 'SART') || strcmp(method2, 'SART_CUDA')
+ iterations = iterations * size(sinogram,1);
+ elseif strcmp(method2, 'ART')
+ iterations = iterations * numel(sinogram);
+ end
+
+ % create data objects
+ V = zeros(this.vol_geom.GridRowCount, this.vol_geom.GridColCount, size(sinogram,3));
+ reconstruction_id = astra_mex_data2d('create', '-vol', this.vol_geom);
+ sinogram_id = astra_mex_data2d('create', '-sino', this.proj_geom);
+ if numel(mask) > 0
+ mask_id = astra_mex_data2d('create', '-vol', this.vol_geom);
+ end
+
+ % algorithm configuration
+ cfg = this.cfg_base;
+ cfg.ProjectionDataId = sinogram_id;
+ cfg.ReconstructionDataId = reconstruction_id;
+ if numel(mask) > 0
+ cfg.option.ReconstructionMaskId = mask_id;
+ end
+ alg_id = astra_mex_algorithm('create', cfg);
+
+ % loop slices
+ for slice = 1:size(sinogram,3)
+
+ % fetch slice of initial reconstruction
+ if numel(V0) > 0
+ astra_mex_data2d('store', reconstruction_id, V0(:,:,slice));
+ else
+ astra_mex_data2d('store', reconstruction_id, 0);
+ end
+
+ % fetch slice of sinogram
+ astra_mex_data2d('store', sinogram_id, sinogram(:,:,slice));
+
+ % fecth slice of mask
+ if numel(mask) > 0
+ astra_mex_data2d('store', mask_id, mask(:,:,slice));
+ end
+
+ % iterate
+ astra_mex_algorithm('iterate', alg_id, iterations);
+
+ % fetch data
+ V(:,:,slice) = astra_mex_data2d('get', reconstruction_id);
+
+ end
+
+ % correct attenuation factors for super-resolution
+ if this.superresolution > 1 && strcmp(this.gpu,'yes')
+ if strcmp(this.proj_geom.type,'fanflat_vec') || strcmp(this.proj_geom.type,'fanflat')
+ if numel(mask) > 0
+ V(mask > 0) = V(mask > 0) ./ this.superresolution;
+ else
+ V = V ./ this.superresolution;
+ end
+ end
+ end
+
+ % garbage collection
+ astra_mex_algorithm('delete', alg_id);
+ astra_mex_data2d('delete', sinogram_id, reconstruction_id);
+ if numel(mask) > 0
+ astra_mex_data2d('delete', mask_id);
+ end
+
+ end
+
+ %------------------------------------------------------------------
+ % Protected function: reconstruct (data in astra)
+ function V = reconstruct_c_astra(this, sinogram, V0, mask, iterations)
+
+ if this.initialized == 0
+ error('IterativeTomography not initialized');
+ end
+
+ if numel(V0) > 1 || numel(mask) > 1 || numel(sinogram) > 1
+ error('Not all required data is stored in the astra memory');
+ end
+
+ if numel(V0) == 0
+ V0 = astra_mex_data2d('create', '-vol', this.vol_geom, 0);
+ end
+
+ % parse method
+ method2 = upper(this.method);
+ if strcmp(method2, 'SART') || strcmp(method2, 'SART_CUDA')
+ iterations = iterations * astra_geom_size(this.proj_geom, 1)
+ this.cfg_base.option.ProjectionOrder = 'random';
+ elseif strcmp(method2, 'ART')
+ s = astra_geom_size(this.proj_geom);
+ iterations = iterations * s(1) * s(2);
+ end
+
+ % algorithm configuration
+ cfg = this.cfg_base;
+ cfg.ProjectionDataId = sinogram;
+ cfg.ReconstructionDataId = V0;
+ if numel(mask) > 0
+ cfg.option.ReconstructionMaskId = mask;
+ end
+ alg_id = astra_mex_algorithm('create', cfg);
+
+ % iterate
+ astra_mex_algorithm('iterate', alg_id, iterations);
+
+ % fetch data
+ V = V0;
+
+ % correct attenuation factors for super-resolution
+ if this.superresolution > 1
+ if strcmp(this.proj_geom.type,'fanflat_vec') || strcmp(this.proj_geom.type,'fanflat')
+ if numel(mask) > 0
+ astra_data_op_masked('$1./s1', [V V], [this.superresolution this.superresolution], mask, this.gpu_core);
+ else
+ astra_data_op('$1./s1', [V V], [this.superresolution this.superresolution], this.gpu_core);
+ end
+ end
+ end
+
+ % garbage collection
+ astra_mex_algorithm('delete', alg_id);
+
+ end
+
+ %------------------------------------------------------------------
+ function V_out = selectROI(~, V_in)
+
+ if numel(V_in) == 1
+ cfg = astra_struct('RoiSelect_CUDA');
+ cfg.DataId = V_in;
+ alg_id = astra_mex_algorithm('create',cfg);
+ astra_mex_algorithm('run', alg_id);
+ astra_mex_algorithm('delete', alg_id);
+ V_out = V_in;
+ else
+ V_out = ROIselectfull(V_in, min([size(V_in,1), size(V_in,2)]));
+ end
+
+ end
+ %------------------------------------------------------------------
+
+ end
+
+end
+
diff --git a/matlab/algorithms/DART/IterativeTomography3D.m b/matlab/algorithms/DART/IterativeTomography3D.m
new file mode 100644
index 0000000..29b963f
--- /dev/null
+++ b/matlab/algorithms/DART/IterativeTomography3D.m
@@ -0,0 +1,405 @@
+classdef IterativeTomography3D < matlab.mixin.Copyable
+
+ % Algorithm class for 3D Iterative Tomography.
+
+ %----------------------------------------------------------------------
+ properties (SetAccess=public, GetAccess=public)
+ superresolution = 1; % SETTING: Volume upsampling factor.
+ proj_type = 'linear'; % SETTING: Projector type, only when gpu='no'.
+ method = 'SIRT3D_CUDA'; % SETTING: Iterative method (see ASTRA toolbox documentation).
+ gpu = 'yes'; % SETTING: Use gpu? {'yes', 'no'}
+ gpu_core = 0; % SETTING: Which gpu core to use? Only when gpu='yes'.
+ inner_circle = 'yes'; % SETTING: Do roi only? {'yes', 'no'}
+ image_size = []; % SETTING: Overwrite default reconstruction size. Only if no vol_geom is specified.
+ use_minc = 'no'; % SETTING: Use minimum constraint. {'no', 'yes'}
+ maxc = +Inf; % SETTING: Maximum constraint. +Inf means off.
+ end
+ %----------------------------------------------------------------------
+ properties (SetAccess=public, GetAccess=public)
+ sinogram = []; % DATA: Projection data.
+ proj_geom = []; % DATA: Projection geometry.
+ V = []; % DATA: Volume data. Also used to set initial estimate (optional).
+ vol_geom = []; % DATA: Volume geometry.
+ end
+ %----------------------------------------------------------------------
+ properties (SetAccess=private, GetAccess=public)
+ initialized = 0; % Is this object initialized?
+ end
+ %----------------------------------------------------------------------
+ properties (SetAccess=protected, GetAccess=protected)
+ proj_geom_sr = []; % PROTECTED: geometry of sinogram (with super-resolution)
+ proj_id = []; % PROTECTED: astra id of projector (when gpu='no')
+ proj_id_sr = []; % PROTECTED: astra id of super-resolution projector (when gpu='no')
+ cfg_base = struct(); % PROTECTED: base configuration structure for the reconstruction algorithm.
+ end
+ %----------------------------------------------------------------------
+
+ methods (Access=public)
+
+ %------------------------------------------------------------------
+ function this = IterativeTomography3D(varargin)
+ % Constructor
+ % >> tomography = IterativeTomography3D(proj_geom);
+ % >> tomography = IterativeTomography3D(proj_geom, vol_geom);
+
+ % Input: IterativeTomography(proj_geom)
+ if nargin == 1
+ this.proj_geom = varargin{1};
+
+ % Input: IterativeTomography(proj_geom, vol_geom)
+ elseif nargin == 2
+ this.proj_geom = varargin{1};
+ this.vol_geom = varargin{2};
+ end
+ end
+
+ %------------------------------------------------------------------
+ function delete(this)
+ % Destructor
+ % >> clear tomography;
+ if strcmp(this.gpu,'no') && numel(this.proj_id) > 0
+ astra_mex_projector('delete', this.proj_id, this.proj_id_sr);
+ end
+ end
+
+ %------------------------------------------------------------------
+ function settings = getsettings(this)
+ % Returns a structure containing all settings of this object.
+ % >> settings = tomography.getsettings();
+ settings.superresolution = this.superresolution;
+ settings.proj_type = this.proj_type;
+ settings.method = this.method;
+ settings.gpu = this.gpu;
+ settings.gpu_core = this.gpu_core;
+ settings.inner_circle = this.inner_circle;
+ settings.image_size = this.image_size;
+ settings.use_minc = this.use_minc;
+ settings.maxc = this.maxc;
+ end
+
+ %------------------------------------------------------------------
+ function ok = initialize(this)
+ % Initialize this object. Returns 1 if succesful.
+ % >> tomography.initialize();
+
+% % create projection geometry with super-resolution
+% this.proj_geom_sr = astra_geom_superresolution(this.proj_geom, this.superresolution);
+
+ % if no volume geometry is specified by the user: create volume geometry
+ if numel(this.vol_geom) == 0
+ if numel(this.image_size) < 2
+ this.image_size(1) = this.proj_geom.DetectorRowCount;
+ this.image_size(2) = this.proj_geom.DetectorColCount;
+ end
+ this.vol_geom = astra_create_vol_geom(this.proj_geom.DetectorColCount, this.proj_geom.DetectorColCount, this.proj_geom.DetectorRowCount);
+ else
+ this.image_size(1) = this.vol_geom.GridRowCount;
+ this.image_size(2) = this.vol_geom.GridColCount;
+ end
+
+ % create projector
+ if strcmp(this.gpu, 'no')
+ this.proj_id = astra_create_projector(this.proj_type, this.proj_geom, this.vol_geom);
+ this.proj_id_sr = astra_create_projector(this.proj_type, this.proj_geom_sr, this.vol_geom);
+ end
+
+ % create reconstruction configuration
+ this.cfg_base = astra_struct(upper(this.method));
+ if strcmp(this.gpu,'no')
+ this.cfg_base.ProjectorId = this.proj_id;
+ this.cfg_base.ProjectionGeometry = this.proj_geom;
+ this.cfg_base.ReconstructionGeometry = this.vol_geom;
+ this.cfg_base.option.ProjectionOrder = 'random';
+ end
+ this.cfg_base.option.DetectorSuperSampling = this.superresolution;
+ if strcmp(this.gpu,'yes')
+ this.cfg_base.option.GPUindex = this.gpu_core;
+ end
+ this.cfg_base.option.UseMinConstraint = this.use_minc;
+ if ~isinf(this.maxc)
+ this.cfg_base.option.UseMaxConstraint = 'yes';
+ this.cfg_base.option.MaxConstraintValue = this.maxc;
+ end
+
+ this.initialized = 1;
+ ok = this.initialized;
+ end
+
+ %------------------------------------------------------------------
+ function projections = project(this, volume)
+ % Compute forward projection.
+ % >> projections = tomography.project(volume);
+
+ if ~this.initialized
+ this.initialize();
+ end
+
+ % project
+ projections = this.project_c(volume);
+ end
+
+ %------------------------------------------------------------------
+ function reconstruction = reconstruct(this, varargin)
+ % Compute reconstruction.
+ % Uses tomography.sinogram
+ % Initial solution (if available) should be stored in tomography.V
+ % >> reconstruction = tomography.reconstruct(projections, iterations);
+ % >> reconstruction = tomography.reconstruct(projections, volume0, iterations);
+
+ if ~this.initialized
+ this.initialize();
+ end
+
+ if numel(varargin) == 2
+ reconstruction = this.reconstruct_c(varargin{1}, [], [], varargin{2});
+ elseif numel(varargin) == 3
+ reconstruction = this.reconstruct_c(varargin{1}, varargin{2}, [], varargin{3});
+ else
+ error('invalid parameter list')
+ end
+
+ if strcmp(this.inner_circle,'yes')
+ reconstruction = this.selectROI(reconstruction);
+ end
+ end
+
+ %------------------------------------------------------------------
+ function reconstruction = reconstruct_mask(this, varargin)
+ % Compute reconstruction with mask.
+ % Uses tomography.sinogram
+ % Initial solution (if available) should be stored in tomography.V
+ % >> reconstruction = tomography.reconstructMask(projections, mask, iterations);
+ % >> reconstruction = tomography.reconstructMask(projections, volume0, mask, iterations);
+
+ if ~this.initialized
+ this.initialize();
+ end
+
+ if numel(varargin) == 3
+ reconstruction = this.reconstruct_c(varargin{1}, [], varargin{2}, varargin{3});
+ elseif numel(varargin) == 4
+ reconstruction = this.reconstruct_c(varargin{1}, varargin{2}, varargin{3}, varargin{4});
+ else
+ error('invalid parameter list')
+ end
+
+ if strcmp(this.inner_circle,'yes')
+ reconstruction = this.selectROI(reconstruction);
+ end
+
+ end
+ %------------------------------------------------------------------
+
+ end
+
+ %----------------------------------------------------------------------
+ methods (Access = protected)
+
+ %------------------------------------------------------------------
+ % Protected function: create FP
+ function sinogram = project_c(this, volume)
+
+ if this.initialized == 0
+ error('IterativeTomography not initialized');
+ end
+
+ % data is stored in astra memory
+ if numel(volume) == 1
+
+ if strcmp(this.gpu, 'yes')
+ sinogram_tmp = astra_create_sino_cuda(volume, this.proj_geom_sr, this.vol_geom, this.gpu_core);
+ else
+ sinogram_tmp = astra_create_sino(volume, this.proj_id);
+ end
+
+ % sinogram downsampling
+ if this.superresolution > 1
+ sinogram_data = astra_mex_data2d('get', sinogram_tmp);
+ astra_mex_data2d('delete', sinogram_tmp);
+ sinogram_data = downsample_sinogram(sinogram_data, this.superresolution);
+ sinogram = astra_mex_data2d('create', 'sino', this.proj_geom, sinogram_data);
+ else
+ sinogram = sinogram_tmp;
+ end
+
+ % data is stored in matlab memory
+ else
+ [tmp_id, sinogram] = astra_create_sino3d_cuda(volume, this.proj_geom, this.vol_geom);
+ astra_mex_data3d('delete', tmp_id);
+ end
+ end
+
+ %------------------------------------------------------------------
+ % Protected function: reconstruct
+ function V = reconstruct_c(this, sinogram, V0, mask, iterations)
+
+ if this.initialized == 0
+ error('IterativeTomography not initialized');
+ end
+
+ % data is stored in astra memory
+ if numel(sinogram) == 1
+ V = this.reconstruct_c_astra(sinogram, V0, mask, iterations);
+
+ % data is stored in matlab memory
+ else
+ V = this.reconstruct_c_matlab(sinogram, V0, mask, iterations);
+ end
+ end
+
+ %------------------------------------------------------------------
+ % Protected function: reconstruct (data in matlab)
+ function V = reconstruct_c_matlab(this, sinogram, V0, mask, iterations)
+
+ if this.initialized == 0
+ error('IterativeTomography not initialized');
+ end
+
+ % parse method
+ method2 = upper(this.method);
+ if strcmp(method2, 'SART') || strcmp(method2, 'SART_CUDA')
+ iterations = iterations * size(sinogram,1);
+ elseif strcmp(method2, 'ART')
+ iterations = iterations * numel(sinogram);
+ end
+
+ % create data objects
+% V = zeros(this.vol_geom.GridRowCount, this.vol_geom.GridColCount, size(sinogram,3));
+ reconstruction_id = astra_mex_data3d('create', '-vol', this.vol_geom);
+ sinogram_id = astra_mex_data3d('create', '-proj3d', this.proj_geom);
+ if numel(mask) > 0
+ mask_id = astra_mex_data3d('create', '-vol', this.vol_geom);
+ end
+
+ % algorithm configuration
+ cfg = this.cfg_base;
+ cfg.ProjectionDataId = sinogram_id;
+ cfg.ReconstructionDataId = reconstruction_id;
+ if numel(mask) > 0
+ cfg.option.ReconstructionMaskId = mask_id;
+ end
+ alg_id = astra_mex_algorithm('create', cfg);
+
+% % loop slices
+% for slice = 1:size(sinogram,3)
+
+ % fetch slice of initial reconstruction
+ if numel(V0) > 0
+ astra_mex_data3d('store', reconstruction_id, V0);
+ else
+ astra_mex_data3d('store', reconstruction_id, 0);
+ end
+
+ % fetch slice of sinogram
+ astra_mex_data3d('store', sinogram_id, sinogram);
+
+ % fecth slice of mask
+ if numel(mask) > 0
+ astra_mex_data3d('store', mask_id, mask);
+ end
+
+ % iterate
+ astra_mex_algorithm('iterate', alg_id, iterations);
+
+ % fetch data
+ V = astra_mex_data3d('get', reconstruction_id);
+
+% end
+
+ % correct attenuation factors for super-resolution
+ if this.superresolution > 1 && strcmp(this.gpu,'yes')
+ if strcmp(this.proj_geom.type,'fanflat_vec') || strcmp(this.proj_geom.type,'fanflat')
+ if numel(mask) > 0
+ V(mask > 0) = V(mask > 0) ./ this.superresolution;
+ else
+ V = V ./ this.superresolution;
+ end
+ end
+ end
+
+ % garbage collection
+ astra_mex_algorithm('delete', alg_id);
+ astra_mex_data3d('delete', sinogram_id, reconstruction_id);
+ if numel(mask) > 0
+ astra_mex_data3d('delete', mask_id);
+ end
+
+ end
+
+ %------------------------------------------------------------------
+ % Protected function: reconstruct (data in astra)
+ function V = reconstruct_c_astra(this, sinogram, V0, mask, iterations)
+
+ if this.initialized == 0
+ error('IterativeTomography not initialized');
+ end
+
+ if numel(V0) > 1 || numel(mask) > 1 || numel(sinogram) > 1
+ error('Not all required data is stored in the astra memory');
+ end
+
+ if numel(V0) == 0
+ V0 = astra_mex_data2d('create', '-vol', this.vol_geom, 0);
+ end
+
+ % parse method
+ method2 = upper(this.method);
+ if strcmp(method2, 'SART') || strcmp(method2, 'SART_CUDA')
+ iterations = iterations * astra_geom_size(this.proj_geom, 1);
+ elseif strcmp(method2, 'ART')
+ s = astra_geom_size(this.proj_geom);
+ iterations = iterations * s(1) * s(2);
+ end
+
+ % algorithm configuration
+ cfg = this.cfg_base;
+ cfg.ProjectionDataId = sinogram;
+ cfg.ReconstructionDataId = V0;
+ if numel(mask) > 0
+ cfg.option.ReconstructionMaskId = mask;
+ end
+ alg_id = astra_mex_algorithm('create', cfg);
+
+ % iterate
+ astra_mex_algorithm('iterate', alg_id, iterations);
+
+ % fetch data
+ V = V0;
+
+ % correct attenuation factors for super-resolution
+ if this.superresolution > 1
+ if strcmp(this.proj_geom.type,'fanflat_vec') || strcmp(this.proj_geom.type,'fanflat')
+ if numel(mask) > 0
+ astra_data_op_masked('$1./s1', [V V], [this.superresolution this.superresolution], mask, this.gpu_core);
+ else
+ astra_data_op('$1./s1', [V V], [this.superresolution this.superresolution], this.gpu_core);
+ end
+ end
+ end
+
+ % garbage collection
+ astra_mex_algorithm('delete', alg_id);
+
+ end
+
+ %------------------------------------------------------------------
+ function V_out = selectROI(~, V_in)
+
+ if numel(V_in) == 1
+ cfg = astra_struct('RoiSelect_CUDA');
+ cfg.DataId = V_in;
+ alg_id = astra_mex_algorithm('create',cfg);
+ astra_mex_algorithm('run', alg_id);
+ astra_mex_algorithm('delete', alg_id);
+ V_out = V_in;
+ else
+ V_out = ROIselectfull(V_in, min([size(V_in,1), size(V_in,2)]));
+ end
+
+ end
+ %------------------------------------------------------------------
+
+ end
+
+end
+
diff --git a/matlab/algorithms/DART/Kernels.m b/matlab/algorithms/DART/Kernels.m
index f91bf33..558f611 100644
--- a/matlab/algorithms/DART/Kernels.m
+++ b/matlab/algorithms/DART/Kernels.m
@@ -1,8 +1,8 @@
%--------------------------------------------------------------------------
% This file is part of the ASTRA Toolbox
%
-% Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
-% 2014-2015, CWI, Amsterdam
+% Copyright: 2010-2014, iMinds-Vision Lab, University of Antwerp
+% 2014, CWI, Amsterdam
% License: Open Source under GPLv3
% Contact: astra@uantwerpen.be
% Website: http://sf.net/projects/astra-toolbox
diff --git a/matlab/algorithms/DART/MaskingDefault.m b/matlab/algorithms/DART/MaskingDefault.m
index 1ecbacb..f91a6f5 100644
--- a/matlab/algorithms/DART/MaskingDefault.m
+++ b/matlab/algorithms/DART/MaskingDefault.m
@@ -1,8 +1,8 @@
%--------------------------------------------------------------------------
% This file is part of the ASTRA Toolbox
%
-% Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
-% 2014-2015, CWI, Amsterdam
+% Copyright: 2010-2014, iMinds-Vision Lab, University of Antwerp
+% 2014, CWI, Amsterdam
% License: Open Source under GPLv3
% Contact: astra@uantwerpen.be
% Website: http://sf.net/projects/astra-toolbox
diff --git a/matlab/algorithms/DART/MaskingGPU.m b/matlab/algorithms/DART/MaskingGPU.m
index dfbbd54..7d31aa8 100644
--- a/matlab/algorithms/DART/MaskingGPU.m
+++ b/matlab/algorithms/DART/MaskingGPU.m
@@ -1,8 +1,8 @@
%--------------------------------------------------------------------------
% This file is part of the ASTRA Toolbox
%
-% Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
-% 2014-2015, CWI, Amsterdam
+% Copyright: 2010-2014, iMinds-Vision Lab, University of Antwerp
+% 2014, CWI, Amsterdam
% License: Open Source under GPLv3
% Contact: astra@uantwerpen.be
% Website: http://sf.net/projects/astra-toolbox
diff --git a/matlab/algorithms/DART/OutputDefault.m b/matlab/algorithms/DART/OutputDefault.m
index 968261d..33e908b 100644
--- a/matlab/algorithms/DART/OutputDefault.m
+++ b/matlab/algorithms/DART/OutputDefault.m
@@ -1,8 +1,8 @@
%--------------------------------------------------------------------------
% This file is part of the ASTRA Toolbox
%
-% Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
-% 2014-2015, CWI, Amsterdam
+% Copyright: 2010-2014, iMinds-Vision Lab, University of Antwerp
+% 2014, CWI, Amsterdam
% License: Open Source under GPLv3
% Contact: astra@uantwerpen.be
% Website: http://sf.net/projects/astra-toolbox
diff --git a/matlab/algorithms/DART/SegmentationDefault.m b/matlab/algorithms/DART/SegmentationDefault.m
index 3b42740..98265c0 100644
--- a/matlab/algorithms/DART/SegmentationDefault.m
+++ b/matlab/algorithms/DART/SegmentationDefault.m
@@ -1,8 +1,8 @@
%--------------------------------------------------------------------------
% This file is part of the ASTRA Toolbox
%
-% Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
-% 2014-2015, CWI, Amsterdam
+% Copyright: 2010-2014, iMinds-Vision Lab, University of Antwerp
+% 2014, CWI, Amsterdam
% License: Open Source under GPLv3
% Contact: astra@uantwerpen.be
% Website: http://sf.net/projects/astra-toolbox
diff --git a/matlab/algorithms/DART/SmoothingDefault.m b/matlab/algorithms/DART/SmoothingDefault.m
index f89526e..1974fa1 100644
--- a/matlab/algorithms/DART/SmoothingDefault.m
+++ b/matlab/algorithms/DART/SmoothingDefault.m
@@ -1,8 +1,8 @@
%--------------------------------------------------------------------------
% This file is part of the ASTRA Toolbox
%
-% Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
-% 2014-2015, CWI, Amsterdam
+% Copyright: 2010-2014, iMinds-Vision Lab, University of Antwerp
+% 2014, CWI, Amsterdam
% License: Open Source under GPLv3
% Contact: astra@uantwerpen.be
% Website: http://sf.net/projects/astra-toolbox
diff --git a/matlab/algorithms/DART/SmoothingGPU.m b/matlab/algorithms/DART/SmoothingGPU.m
index 5a8fa48..1249e19 100644
--- a/matlab/algorithms/DART/SmoothingGPU.m
+++ b/matlab/algorithms/DART/SmoothingGPU.m
@@ -1,8 +1,8 @@
%--------------------------------------------------------------------------
% This file is part of the ASTRA Toolbox
%
-% Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
-% 2014-2015, CWI, Amsterdam
+% Copyright: 2010-2014, iMinds-Vision Lab, University of Antwerp
+% 2014, CWI, Amsterdam
% License: Open Source under GPLv3
% Contact: astra@uantwerpen.be
% Website: http://sf.net/projects/astra-toolbox
diff --git a/matlab/algorithms/DART/StatisticsDefault.m b/matlab/algorithms/DART/StatisticsDefault.m
index 31ead14..9d33256 100644
--- a/matlab/algorithms/DART/StatisticsDefault.m
+++ b/matlab/algorithms/DART/StatisticsDefault.m
@@ -1,8 +1,8 @@
%--------------------------------------------------------------------------
% This file is part of the ASTRA Toolbox
%
-% Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
-% 2014-2015, CWI, Amsterdam
+% Copyright: 2010-2014, iMinds-Vision Lab, University of Antwerp
+% 2014, CWI, Amsterdam
% License: Open Source under GPLv3
% Contact: astra@uantwerpen.be
% Website: http://sf.net/projects/astra-toolbox
diff --git a/matlab/algorithms/DART/examples/example1.m b/matlab/algorithms/DART/examples/example1.m
index 9a836f8..cb02e0f 100644
--- a/matlab/algorithms/DART/examples/example1.m
+++ b/matlab/algorithms/DART/examples/example1.m
@@ -8,15 +8,11 @@
% Website: http://sf.net/projects/astra-toolbox
%--------------------------------------------------------------------------
-clear all;
-
addpath('../');
-%%
-% Example 1: 2D parallel beam, cuda
-%
+%% Example 1: 2D parallel beam, cuda
-% Configuration
+% configuration
proj_count = 20;
dart_iterations = 20;
filename = 'cylinders.png';
@@ -26,26 +22,20 @@ rho = [0, 255];
tau = 128;
gpu_core = 0;
-% Load phantom
+% load phantom
I = imreadgs(filename);
-% Create projection and volume geometries
+% create projection and volume geometries
det_count = size(I, 1);
angles = linspace2(0, pi, proj_count);
proj_geom = astra_create_proj_geom('parallel', 1, det_count, angles);
-vol_geom = astra_create_vol_geom(det_count, det_count, 1);
+vol_geom = astra_create_vol_geom(det_count, det_count);
-% Create sinogram.
+% create sinogram
[sinogram_id, sinogram] = astra_create_sino_cuda(I, proj_geom, vol_geom);
astra_mex_data2d('delete', sinogram_id);
-%%
% DART
-%
-
-%base.sinogram = sinogram;
-%base.proj_geom = proj_geom;
-
D = DARTalgorithm(sinogram, proj_geom);
D.t0 = 100;
D.t = 10;
@@ -63,21 +53,19 @@ D.smoothing.gpu_core = gpu_core;
D.masking.random = 0.1;
D.masking.gpu_core = gpu_core;
-D.output.directory = outdir;
-D.output.pre = [prefix '_'];
-D.output.save_images = 'no';
-D.output.save_results = {'stats', 'settings', 'S', 'V'};
-D.output.save_interval = dart_iterations;
-D.output.verbose = 'yes';
+D.output.directory = outdir;
+D.output.pre = [prefix '_'];
+D.output.save_images = 'no';
+D.output.save_results = {'stats', 'settings', 'S', 'V'};
+D.output.save_interval = dart_iterations;
+D.output.verbose = 'yes';
-D.statistics.proj_diff = 'no';
+D.statistics.proj_diff = 'no';
D.initialize();
D.iterate(dart_iterations);
-%%
-% Convert middle slice of final iteration to png.
-%
+% save the reconstruction and the segmentation to file
imwritesc(D.S, [outdir '/' prefix '_S.png']);
imwritesc(D.V, [outdir '/' prefix '_V.png']);
diff --git a/matlab/algorithms/DART/examples/example2.m b/matlab/algorithms/DART/examples/example2.m
index 7fe6988..89660a5 100644
--- a/matlab/algorithms/DART/examples/example2.m
+++ b/matlab/algorithms/DART/examples/example2.m
@@ -8,15 +8,11 @@
% Website: http://sf.net/projects/astra-toolbox
%--------------------------------------------------------------------------
-clear all;
-
addpath('../');
-%%
-% Example Z: 3D parallel beam, cuda
-%
+%% Example 2: 3D parallel beam, cuda
-% Configuration
+% configuration
proj_count = 20;
dart_iterations = 20;
outdir = './';
@@ -25,50 +21,47 @@ rho = [0, 0.5, 1];
tau = [0.25, 0.75];
gpu_core = 0;
-% Load phantom
+% load phantom
load('phantom3d');
-% Create projection and volume geometries
+% create projection and volume geometries
det_count = size(I, 1);
slice_count = size(I,3);
angles = linspace2(0, pi, proj_count);
proj_geom = astra_create_proj_geom('parallel3d', 1, 1, slice_count, det_count, angles);
vol_geom = astra_create_vol_geom(size(I));
-% Create sinogram
+% create sinogram
[sinogram_id, sinogram] = astra_create_sino3d_cuda(I, proj_geom, vol_geom);
astra_mex_data3d('delete', sinogram_id);
-%%
% DART
-%
-
D = DARTalgorithm(sinogram, proj_geom);
D.t0 = 100;
D.t = 10;
D.tomography = IterativeTomography3D();
-D.tomography.method = 'SIRT3D_CUDA';
-D.tomography.gpu_core = gpu_core;
-D.tomography.use_minc = 'yes';
+D.tomography.method = 'SIRT3D_CUDA';
+D.tomography.gpu_core = gpu_core;
+D.tomography.use_minc = 'yes';
-D.segmentation.rho = rho;
-D.segmentation.tau = tau;
+D.segmentation.rho = rho;
+D.segmentation.tau = tau;
-D.smoothing.b = 0.1;
-D.smoothing.full3d = 'yes';
-D.smoothing.gpu_core = gpu_core;
+D.smoothing.b = 0.1;
+D.smoothing.full3d = 'yes';
+D.smoothing.gpu_core = gpu_core;
-D.masking.random = 0.1;
-D.masking.conn = 4;
-D.masking.gpu_core = gpu_core;
+D.masking.random = 0.1;
+D.masking.conn = 4;
+D.masking.gpu_core = gpu_core;
-D.output.directory = outdir;
-D.output.pre = [prefix '_'];
-D.output.save_images = 'no';
-D.output.save_results = {'stats', 'settings', 'S', 'V'};
-D.output.save_interval = dart_iterations;
-D.output.verbose = 'yes';
+D.output.directory = outdir;
+D.output.pre = [prefix '_'];
+D.output.save_images = 'no';
+D.output.save_results = {'stats', 'settings', 'S', 'V'};
+D.output.save_interval = dart_iterations;
+D.output.verbose = 'yes';
D.statistics.proj_diff = 'no';
@@ -76,8 +69,6 @@ D.initialize();
D.iterate(dart_iterations);
-%%
-% Convert output of final iteration to png.
-%
+% save the central slice of the reconstruction and the segmentation to file
imwritesc(D.S(:,:,64), [outdir '/' prefix '_S_slice_64.png']);
imwritesc(D.V(:,:,64), [outdir '/' prefix '_V_slice_64.png']);
diff --git a/matlab/algorithms/DART/examples/example3.m b/matlab/algorithms/DART/examples/example3.m
index 895630b..cc80b0f 100644
--- a/matlab/algorithms/DART/examples/example3.m
+++ b/matlab/algorithms/DART/examples/example3.m
@@ -8,15 +8,11 @@
% Website: http://sf.net/projects/astra-toolbox
%--------------------------------------------------------------------------
-clear all;
-
addpath('../');
-%%
-% Example 3: 3D cone beam, cuda
-%
+%% Example 3: 3D cone beam, cuda
-% Configuration
+% configuration
proj_count = 20;
dart_iterations = 20;
outdir = './';
@@ -25,24 +21,21 @@ rho = [0, 0.5, 1];
tau = [0.25, 0.75];
gpu_core = 0;
-% Load phantom
+% load phantom
load('phantom3d');
-% Create projection and volume geometries
+% create projection and volume geometries
det_count = size(I, 1);
slice_count = size(I,3);
angles = linspace2(0, pi, proj_count);
proj_geom = astra_create_proj_geom('cone', 1, 1, slice_count, det_count, angles, 500, 0);
vol_geom = astra_create_vol_geom(size(I));
-% Create sinogram
+% create sinogram
[sinogram_id, sinogram] = astra_create_sino3d_cuda(I, proj_geom, vol_geom);
astra_mex_data3d('delete', sinogram_id);
-%%
% DART
-%
-
D = DARTalgorithm(sinogram, proj_geom);
D.t0 = 100;
D.t = 10;
@@ -76,8 +69,6 @@ D.initialize();
D.iterate(dart_iterations);
-%%
-% Convert output of final iteration to png.
-%
+% save the central slice of the reconstruction and the segmentation to file
imwritesc(D.S(:,:,64), [outdir '/' prefix '_S_slice_64.png']);
imwritesc(D.V(:,:,64), [outdir '/' prefix '_V_slice_64.png']);
diff --git a/matlab/mex/astra_mex.cpp b/matlab/mex/astra_mex.cpp
index 0eb5662..4bf42dd 100644
--- a/matlab/mex/astra_mex.cpp
+++ b/matlab/mex/astra_mex.cpp
@@ -28,6 +28,7 @@ $Id$
#include <mex.h>
#include "mexHelpFunctions.h"
+#include "mexInitFunctions.h"
#include "astra/Globals.h"
@@ -104,6 +105,8 @@ void mexFunction(int nlhs, mxArray* plhs[],
return;
}
+ initASTRAMex();
+
// SWITCH (MODE)
if (sMode == std::string("version")) {
astra_mex_version(nlhs, plhs, nrhs, prhs);
diff --git a/matlab/mex/astra_mex_algorithm_c.cpp b/matlab/mex/astra_mex_algorithm_c.cpp
index f719a6b..e4afa63 100644
--- a/matlab/mex/astra_mex_algorithm_c.cpp
+++ b/matlab/mex/astra_mex_algorithm_c.cpp
@@ -32,13 +32,15 @@ $Id$
*/
#include <mex.h>
#include "mexHelpFunctions.h"
+#include "mexInitFunctions.h"
+#include "astra/Globals.h"
#define USE_MATLAB_UNDOCUMENTED
#ifdef USE_MATLAB_UNDOCUMENTED
extern "C" { bool utIsInterruptPending(); }
-#ifdef __linux__
+#ifdef USE_PTHREADS
#define USE_PTHREADS_CTRLC
#include <pthread.h>
#else
@@ -49,7 +51,6 @@ extern "C" { bool utIsInterruptPending(); }
-#include "astra/Globals.h"
#include "astra/AstraObjectManager.h"
#include "astra/AstraObjectFactory.h"
@@ -78,26 +79,23 @@ void astra_mex_algorithm_create(int nlhs, mxArray* plhs[], int nrhs, const mxArr
}
// turn MATLAB struct to an XML-based Config object
- XMLDocument* xml = struct2XML("Algorithm", prhs[1]);
- Config cfg;
- cfg.self = xml->getRootNode();
+ Config* cfg = structToConfig("Algorithm", prhs[1]);
- CAlgorithm* pAlg = CAlgorithmFactory::getSingleton().create(cfg.self->getAttribute("type"));
+ CAlgorithm* pAlg = CAlgorithmFactory::getSingleton().create(cfg->self->getAttribute("type"));
if (!pAlg) {
- delete xml;
+ delete cfg;
mexErrMsgTxt("Unknown algorithm. \n");
return;
}
// create algorithm
- if (!pAlg->initialize(cfg)) {
- delete xml;
+ if (!pAlg->initialize(*cfg)) {
+ delete cfg;
delete pAlg;
mexErrMsgTxt("Algorithm not initialized. \n");
return;
}
-
- delete xml;
+ delete cfg;
// store algorithm
int iIndex = CAlgorithmManager::getSingleton().store(pAlg);
@@ -322,12 +320,14 @@ void mexFunction(int nlhs, mxArray* plhs[],
// INPUT: Mode
string sMode = "";
if (1 <= nrhs) {
- sMode = mex_util_get_string(prhs[0]);
+ sMode = mexToString(prhs[0]);
} else {
printHelp();
return;
}
+ initASTRAMex();
+
// SWITCH (MODE)
if (sMode == "create") {
astra_mex_algorithm_create(nlhs, plhs, nrhs, prhs);
diff --git a/matlab/mex/astra_mex_algorithm_vc08.vcproj b/matlab/mex/astra_mex_algorithm_vc09.vcproj
index baa4c44..d5cebc0 100644
--- a/matlab/mex/astra_mex_algorithm_vc08.vcproj
+++ b/matlab/mex/astra_mex_algorithm_vc09.vcproj
@@ -19,7 +19,7 @@
</ToolFiles>
<Configurations>
<Configuration
- Name="Release|Win32"
+ Name="Debug_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -40,12 +40,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -55,16 +49,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32.lib libmex.lib libmx.lib libut.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -85,9 +69,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release|x64"
+ Name="Debug_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -108,12 +111,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -123,15 +120,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64.lib libmex.lib libmx.lib libut.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -152,9 +140,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|Win32"
+ Name="Debug|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -175,13 +181,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -191,16 +190,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib libut.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="false"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -221,9 +210,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|x64"
+ Name="Debug|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -244,13 +252,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -260,15 +261,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib libut.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -289,9 +281,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|Win32"
+ Name="Release_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -312,14 +322,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -329,16 +331,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib libut.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -359,9 +351,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|x64"
+ Name="Release_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -380,16 +391,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
- BrowseInformation="1"
- DebugInformationFormat="4"
/>
<Tool
Name="VCManagedResourceCompilerTool"
@@ -401,17 +402,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib libut.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -432,9 +422,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug|Win32"
+ Name="Release|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -455,13 +463,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -471,16 +472,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib libut.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -501,9 +492,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug|x64"
+ Name="Release|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -522,13 +532,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="3"
/>
<Tool
Name="VCManagedResourceCompilerTool"
@@ -540,16 +543,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib libut.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -570,6 +563,24 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
+ />
</Configuration>
</Configurations>
<References>
@@ -587,6 +598,14 @@
RelativePath=".\mexHelpFunctions.h"
>
</File>
+ <File
+ RelativePath=".\mexInitFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexInitFunctions.h"
+ >
+ </File>
</Files>
<Globals>
</Globals>
diff --git a/matlab/mex/astra_mex_algorithm_vc11.vcxproj b/matlab/mex/astra_mex_algorithm_vc11.vcxproj
index bdbca46..c133e26 100644
--- a/matlab/mex/astra_mex_algorithm_vc11.vcxproj
+++ b/matlab/mex/astra_mex_algorithm_vc11.vcxproj
@@ -40,19 +40,15 @@
<RootNamespace>astraMatlab</RootNamespace>
</PropertyGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.Default.props" />
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
- <ConfigurationType>DynamicLibrary</ConfigurationType>
- <PlatformToolset>v110</PlatformToolset>
- </PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
@@ -60,7 +56,7 @@
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
@@ -68,6 +64,10 @@
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
+ <ConfigurationType>DynamicLibrary</ConfigurationType>
+ <PlatformToolset>v110</PlatformToolset>
+ </PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
@@ -75,215 +75,230 @@
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.props" />
<ImportGroup Label="ExtensionSettings">
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
<PropertyGroup Label="UserMacros" />
<PropertyGroup>
<_ProjectFileVersion>11.0.60610.1</_ProjectFileVersion>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw64</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
- <TargetExt>.mexw64</TargetExt>
<TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw64</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw64</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw64</TargetExt>
</PropertyGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
<ClCompile>
- <Optimization>MaxSpeed</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>Disabled</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
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+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
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- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
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<OpenMPSupport>true</OpenMPSupport>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
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+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>Disabled</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
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- <AdditionalDependencies>AstraCuda32.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
- <GenerateDebugInformation>false</GenerateDebugInformation>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
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+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
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- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions)</PreprocessorDefinitions>
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+ <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <Optimization>Disabled</Optimization>
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- <AdditionalDependencies>AstraCuda64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
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- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
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- <Optimization>Disabled</Optimization>
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- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
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+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
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<Link>
- <AdditionalDependencies>AstraCuda32D.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
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+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
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- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
- <Midl>
- <TargetEnvironment>X64</TargetEnvironment>
- </Midl>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
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- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_INC_PATH);..\..\lib\include;..\..\lib\include\cuda;..\..\include\;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions)</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <BrowseInformation>true</BrowseInformation>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>AstraCuda64D.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>AstraCuda64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
- <TargetMachine>MachineX64</TargetMachine>
</Link>
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- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>Astra32D.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw32</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra32.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Release;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
- <Midl>
- <TargetEnvironment>X64</TargetEnvironment>
- </Midl>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>Astra64D.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Release;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
- <TargetMachine>MachineX64</TargetMachine>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
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</ItemDefinitionGroup>
<ItemGroup>
<ClCompile Include="astra_mex_algorithm_c.cpp" />
<ClCompile Include="mexHelpFunctions.cpp" />
- <ClCompile Include="mexCopyDataHelpFunctions.cpp">
- <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">true</ExcludedFromBuild>
- </ClCompile>
- <ClCompile Include="mexDataManagerHelpFunctions.cpp" />
+ <ClCompile Include="mexInitFunctions.cpp" />
</ItemGroup>
<ItemGroup>
<ClInclude Include="mexHelpFunctions.h" />
- <ClInclude Include="mexCopyDataHelpFunctions.h">
- <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">true</ExcludedFromBuild>
- </ClInclude>
- <ClInclude Include="mexDataManagerHelpFunctions.h" />
+ <ClInclude Include="mexInitFunctions.h" />
</ItemGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
<ImportGroup Label="ExtensionTargets">
diff --git a/matlab/mex/astra_mex_c.cpp b/matlab/mex/astra_mex_c.cpp
index 2989b7a..4a331f5 100644
--- a/matlab/mex/astra_mex_c.cpp
+++ b/matlab/mex/astra_mex_c.cpp
@@ -33,6 +33,7 @@ $Id$
#include <mex.h>
#include "mexHelpFunctions.h"
+#include "mexInitFunctions.h"
#include "astra/Globals.h"
@@ -122,12 +123,14 @@ void mexFunction(int nlhs, mxArray* plhs[],
// INPUT0: Mode
string sMode = "";
if (1 <= nrhs) {
- sMode = mex_util_get_string(prhs[0]);
+ sMode = mexToString(prhs[0]);
} else {
printHelp();
return;
}
+ initASTRAMex();
+
// SWITCH (MODE)
if (sMode == std::string("version")) {
astra_mex_version(nlhs, plhs, nrhs, prhs);
diff --git a/matlab/mex/astra_mex_data2d_c.cpp b/matlab/mex/astra_mex_data2d_c.cpp
index b219179..9576896 100644
--- a/matlab/mex/astra_mex_data2d_c.cpp
+++ b/matlab/mex/astra_mex_data2d_c.cpp
@@ -32,6 +32,7 @@ $Id$
*/
#include <mex.h>
#include "mexHelpFunctions.h"
+#include "mexInitFunctions.h"
#include <list>
@@ -98,10 +99,10 @@ void astra_mex_data2d_create(int& nlhs, mxArray* plhs[], int& nrhs, const mxArra
return;
}
- string sDataType = mex_util_get_string(prhs[1]);
+ string sDataType = mexToString(prhs[1]);
CFloat32Data2D* pDataObject2D = NULL;
- if (nrhs >= 4 && !(mex_is_scalar(prhs[3])|| mxIsDouble(prhs[3]) || mxIsLogical(prhs[3]) || mxIsSingle(prhs[3]) )) {
+ if (nrhs >= 4 && !(mexIsScalar(prhs[3])|| mxIsDouble(prhs[3]) || mxIsLogical(prhs[3]) || mxIsSingle(prhs[3]) )) {
mexErrMsgTxt("Data must be single, double or logical.");
return;
}
@@ -116,23 +117,20 @@ void astra_mex_data2d_create(int& nlhs, mxArray* plhs[], int& nrhs, const mxArra
if (!mxIsStruct(prhs[2])) {
mexErrMsgTxt("Argument 3 is not a valid MATLAB struct.\n");
}
- XMLDocument* xml = struct2XML(string("VolumeGeometry"), prhs[2]);
- if (!xml)
- return;
- Config cfg;
- cfg.self = xml->getRootNode();
+
+ Config* cfg = structToConfig("VolumeGeometry", prhs[2]);
CVolumeGeometry2D* pGeometry = new CVolumeGeometry2D();
- if (!pGeometry->initialize(cfg)) {
+ if (!pGeometry->initialize(*cfg)) {
mexErrMsgTxt("Geometry class not initialized. \n");
- delete xml;
+ delete cfg;
delete pGeometry;
return;
}
// If data is specified, check dimensions
- if (nrhs >= 4 && !mex_is_scalar(prhs[3])) {
+ if (nrhs >= 4 && !mexIsScalar(prhs[3])) {
if (pGeometry->getGridColCount() != mxGetN(prhs[3]) || pGeometry->getGridRowCount() != mxGetM(prhs[3])) {
mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
- delete xml;
+ delete cfg;
delete pGeometry;
return;
}
@@ -140,21 +138,18 @@ void astra_mex_data2d_create(int& nlhs, mxArray* plhs[], int& nrhs, const mxArra
// Initialize data object
pDataObject2D = new CFloat32VolumeData2D(pGeometry);
delete pGeometry;
- delete xml;
+ delete cfg;
}
else if (sDataType == "-sino") {
// Read geometry
if (!mxIsStruct(prhs[2])) {
mexErrMsgTxt("Argument 3 is not a valid MATLAB struct.\n");
}
- XMLDocument* xml = struct2XML("ProjectionGeometry", prhs[2]);
- if (!xml)
- return;
- Config cfg;
- cfg.self = xml->getRootNode();
+
+ Config* cfg = structToConfig("ProjectionGeometry", prhs[2]);
// FIXME: Change how the base class is created. (This is duplicated
// in 'change_geometry' and Projector2D.cpp.)
- std::string type = cfg.self->getAttribute("type");
+ std::string type = cfg->self->getAttribute("type");
CProjectionGeometry2D* pGeometry;
if (type == "sparse_matrix") {
pGeometry = new CSparseMatrixProjectionGeometry2D();
@@ -168,25 +163,25 @@ void astra_mex_data2d_create(int& nlhs, mxArray* plhs[], int& nrhs, const mxArra
} else {
pGeometry = new CParallelProjectionGeometry2D();
}
- if (!pGeometry->initialize(cfg)) {
+ if (!pGeometry->initialize(*cfg)) {
mexErrMsgTxt("Geometry class not initialized. \n");
delete pGeometry;
- delete xml;
+ delete cfg;
return;
}
// If data is specified, check dimensions
- if (nrhs >= 4 && !mex_is_scalar(prhs[3])) {
+ if (nrhs >= 4 && !mexIsScalar(prhs[3])) {
if (pGeometry->getDetectorCount() != mxGetN(prhs[3]) || pGeometry->getProjectionAngleCount() != mxGetM(prhs[3])) {
mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
delete pGeometry;
- delete xml;
+ delete cfg;
return;
}
}
// Initialize data object
pDataObject2D = new CFloat32ProjectionData2D(pGeometry);
delete pGeometry;
- delete xml;
+ delete cfg;
}
else {
mexErrMsgTxt("Invalid datatype. Please specify '-vol' or '-sino'. \n");
@@ -210,7 +205,7 @@ void astra_mex_data2d_create(int& nlhs, mxArray* plhs[], int& nrhs, const mxArra
// Store data
if (nrhs >= 4) {
// fill with scalar value
- if (mex_is_scalar(prhs[3])) {
+ if (mexIsScalar(prhs[3])) {
float32 fValue = (float32)mxGetScalar(prhs[3]);
for (int i = 0; i < pDataObject2D->getSize(); ++i) {
pDataObject2D->getData()[i] = fValue;
@@ -294,7 +289,7 @@ void astra_mex_data2d_store(int nlhs, mxArray* plhs[], int nrhs, const mxArray*
}
int iDataID = (int)(mxGetScalar(prhs[1]));
- if (!(mex_is_scalar(prhs[2]) || mxIsDouble(prhs[2]) || mxIsLogical(prhs[2]) || mxIsSingle(prhs[2]))) {
+ if (!(mexIsScalar(prhs[2]) || mxIsDouble(prhs[2]) || mxIsLogical(prhs[2]) || mxIsSingle(prhs[2]))) {
mexErrMsgTxt("Data must be single, double or logical.");
return;
}
@@ -312,7 +307,7 @@ void astra_mex_data2d_store(int nlhs, mxArray* plhs[], int nrhs, const mxArray*
// step3: insert data
// fill with scalar value
- if (mex_is_scalar(prhs[2])) {
+ if (mexIsScalar(prhs[2])) {
float32 fValue = (float32)mxGetScalar(prhs[2]);
for (int i = 0; i < pDataObject->getSize(); ++i) {
pDataObject->getData()[i] = fValue;
@@ -373,7 +368,7 @@ void astra_mex_data2d_store(int nlhs, mxArray* plhs[], int nrhs, const mxArray*
*/
void astra_mex_data2d_get_geometry(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
{
- // step1: input
+ // parse input
if (nrhs < 2) {
mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
return;
@@ -384,7 +379,7 @@ void astra_mex_data2d_get_geometry(int nlhs, mxArray* plhs[], int nrhs, const mx
}
int iDataID = (int)(mxGetScalar(prhs[1]));
- // step2: get data object
+ // fetch data object
CFloat32Data2D* pDataObject = astra::CData2DManager::getSingleton().get(iDataID);
if (!pDataObject || !pDataObject->isInitialized()) {
mexErrMsgTxt("Data object not found or not initialized properly.\n");
@@ -395,11 +390,11 @@ void astra_mex_data2d_get_geometry(int nlhs, mxArray* plhs[], int nrhs, const mx
if (1 <= nlhs) {
if (pDataObject->getType() == CFloat32Data2D::PROJECTION) {
CFloat32ProjectionData2D* pDataObject2 = dynamic_cast<CFloat32ProjectionData2D*>(pDataObject);
- plhs[0] = createProjectionGeometryStruct(pDataObject2->getGeometry());
+ plhs[0] = configToStruct(pDataObject2->getGeometry()->getConfiguration());
}
else if (pDataObject->getType() == CFloat32Data2D::VOLUME) {
CFloat32VolumeData2D* pDataObject2 = dynamic_cast<CFloat32VolumeData2D*>(pDataObject);
- plhs[0] = createVolumeGeometryStruct(pDataObject2->getGeometry());
+ plhs[0] = configToStruct(pDataObject2->getGeometry()->getConfiguration());
}
}
}
@@ -440,12 +435,10 @@ void astra_mex_data2d_change_geometry(int nlhs, mxArray* plhs[], int nrhs, const
if (!mxIsStruct(prhs[2])) {
mexErrMsgTxt("Argument 3 is not a valid MATLAB struct.\n");
}
- XMLDocument* xml = struct2XML("ProjectionGeometry", prhs[2]);
- Config cfg;
- cfg.self = xml->getRootNode();
+ Config* cfg = structToConfig("ProjectionGeometry2D", prhs[2]);
// FIXME: Change how the base class is created. (This is duplicated
// in 'create' and Projector2D.cpp.)
- std::string type = cfg.self->getAttribute("type");
+ std::string type = cfg->self->getAttribute("type");
CProjectionGeometry2D* pGeometry;
if (type == "sparse_matrix") {
pGeometry = new CSparseMatrixProjectionGeometry2D();
@@ -459,24 +452,24 @@ void astra_mex_data2d_change_geometry(int nlhs, mxArray* plhs[], int nrhs, const
} else {
pGeometry = new CParallelProjectionGeometry2D();
}
- if (!pGeometry->initialize(cfg)) {
+ if (!pGeometry->initialize(*cfg)) {
mexErrMsgTxt("Geometry class not initialized. \n");
delete pGeometry;
- delete xml;
+ delete cfg;
return;
}
// If data is specified, check dimensions
if (pGeometry->getDetectorCount() != pSinogram->getDetectorCount() || pGeometry->getProjectionAngleCount() != pSinogram->getAngleCount()) {
mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
delete pGeometry;
- delete xml;
+ delete cfg;
return;
}
// If ok, change geometry
pSinogram->changeGeometry(pGeometry);
delete pGeometry;
- delete xml;
+ delete cfg;
return;
}
@@ -490,27 +483,25 @@ void astra_mex_data2d_change_geometry(int nlhs, mxArray* plhs[], int nrhs, const
if (!mxIsStruct(prhs[2])) {
mexErrMsgTxt("Argument 3 is not a valid MATLAB struct.\n");
}
- XMLDocument* xml = struct2XML(string("VolumeGeometry"), prhs[2]);
- Config cfg;
- cfg.self = xml->getRootNode();
+ Config* cfg = structToConfig("VolumeGeometry2D", prhs[2]);
CVolumeGeometry2D* pGeometry = new CVolumeGeometry2D();
- if (!pGeometry->initialize(cfg)) {
+ if (!pGeometry->initialize(*cfg)) {
mexErrMsgTxt("Geometry class not initialized. \n");
- delete xml;
+ delete cfg;
delete pGeometry;
return;
}
// If data is specified, check dimensions
if (pGeometry->getGridColCount() != pVolume->getWidth() || pGeometry->getGridRowCount() != pVolume->getHeight()) {
mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
- delete xml;
+ delete cfg;
delete pGeometry;
return;
}
// If ok, change geometry
pVolume->changeGeometry(pGeometry);
- delete xml;
+ delete cfg;
delete pGeometry;
}
@@ -639,12 +630,14 @@ void mexFunction(int nlhs, mxArray* plhs[],
// INPUT0: Mode
string sMode = "";
if (1 <= nrhs) {
- sMode = mex_util_get_string(prhs[0]);
+ sMode = mexToString(prhs[0]);
} else {
printHelp();
return;
}
+ initASTRAMex();
+
// SWITCH (MODE)
if (sMode == std::string("get")) {
astra_mex_data2d_get(nlhs, plhs, nrhs, prhs);
diff --git a/matlab/mex/astra_mex_data2d_vc08.vcproj b/matlab/mex/astra_mex_data2d_vc09.vcproj
index 8f1fc13..2c8a63f 100644
--- a/matlab/mex/astra_mex_data2d_vc08.vcproj
+++ b/matlab/mex/astra_mex_data2d_vc09.vcproj
@@ -19,7 +19,7 @@
</ToolFiles>
<Configurations>
<Configuration
- Name="Release|Win32"
+ Name="Debug_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -40,12 +40,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -55,15 +49,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -84,9 +69,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release|x64"
+ Name="Debug_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -107,12 +111,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -122,15 +120,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -151,9 +140,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|Win32"
+ Name="Debug|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -174,13 +181,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -190,15 +190,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -219,9 +210,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|x64"
+ Name="Debug|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -242,13 +252,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -258,15 +261,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -287,9 +281,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|Win32"
+ Name="Release_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -310,14 +322,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -327,16 +331,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -357,9 +351,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|x64"
+ Name="Release_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -378,16 +391,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="&quot;$(CUDA_INC_PATH)&quot;;$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
- BrowseInformation="1"
- DebugInformationFormat="4"
/>
<Tool
Name="VCManagedResourceCompilerTool"
@@ -399,17 +402,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -430,9 +422,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug|Win32"
+ Name="Release|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -453,13 +463,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -469,16 +472,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -499,9 +492,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug|x64"
+ Name="Release|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -520,13 +532,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="3"
/>
<Tool
Name="VCManagedResourceCompilerTool"
@@ -538,16 +543,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -568,6 +563,24 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
+ />
</Configuration>
</Configurations>
<References>
@@ -585,6 +598,30 @@
RelativePath=".\mexHelpFunctions.h"
>
</File>
+ <File
+ RelativePath=".\mexCopyDataHelpFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexCopyDataHelpFunctions.h"
+ >
+ </File>
+ <File
+ RelativePath=".\mexDataManagerHelpFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexDataManagerHelpFunctions.h"
+ >
+ </File>
+ <File
+ RelativePath=".\mexInitFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexInitFunctions.h"
+ >
+ </File>
</Files>
<Globals>
</Globals>
diff --git a/matlab/mex/astra_mex_data2d_vc11.vcxproj b/matlab/mex/astra_mex_data2d_vc11.vcxproj
index eb09332..636780a 100644
--- a/matlab/mex/astra_mex_data2d_vc11.vcxproj
+++ b/matlab/mex/astra_mex_data2d_vc11.vcxproj
@@ -40,19 +40,15 @@
<RootNamespace>astraMatlab</RootNamespace>
</PropertyGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.Default.props" />
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
- <ConfigurationType>DynamicLibrary</ConfigurationType>
- <PlatformToolset>v110</PlatformToolset>
- </PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
@@ -60,7 +56,7 @@
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
@@ -68,6 +64,10 @@
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
+ <ConfigurationType>DynamicLibrary</ConfigurationType>
+ <PlatformToolset>v110</PlatformToolset>
+ </PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
@@ -75,213 +75,234 @@
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.props" />
<ImportGroup Label="ExtensionSettings">
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
<PropertyGroup Label="UserMacros" />
<PropertyGroup>
<_ProjectFileVersion>11.0.60610.1</_ProjectFileVersion>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw64</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
<TargetName>$(ProjectName)_c</TargetName>
<TargetExt>.mexw64</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw64</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
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<OpenMPSupport>true</OpenMPSupport>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
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- <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
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<OpenMPSupport>true</OpenMPSupport>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
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- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions)</PreprocessorDefinitions>
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<OpenMPSupport>true</OpenMPSupport>
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</ClCompile>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
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</ItemDefinitionGroup>
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+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
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- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions)</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>AstraCuda32D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw32</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>AstraCuda32.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
- <Midl>
- <TargetEnvironment>X64</TargetEnvironment>
- </Midl>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(CUDA_INC_PATH);$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions)</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <BrowseInformation>true</BrowseInformation>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>AstraCuda64D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>AstraCuda64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
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</Link>
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+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<ClCompile>
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- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>Astra32D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
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- <AdditionalLibraryDirectories>..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra32.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Release;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
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- <Midl>
- <TargetEnvironment>X64</TargetEnvironment>
- </Midl>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
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+ <GenerateDebugInformation>true</GenerateDebugInformation>
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<ItemGroup>
<ClCompile Include="astra_mex_data2d_c.cpp" />
<ClCompile Include="mexHelpFunctions.cpp" />
- <ClCompile Include="mexCopyDataHelpFunctions.cpp">
- <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">false</ExcludedFromBuild>
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+ <ClCompile Include="mexCopyDataHelpFunctions.cpp" />
<ClCompile Include="mexDataManagerHelpFunctions.cpp" />
+ <ClCompile Include="mexInitFunctions.cpp" />
</ItemGroup>
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<ClInclude Include="mexHelpFunctions.h" />
- <ClInclude Include="mexCopyDataHelpFunctions.h">
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+ <ClInclude Include="mexCopyDataHelpFunctions.h" />
<ClInclude Include="mexDataManagerHelpFunctions.h" />
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</ItemGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
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diff --git a/matlab/mex/astra_mex_data3d_c.cpp b/matlab/mex/astra_mex_data3d_c.cpp
index db81519..32b0ba7 100644
--- a/matlab/mex/astra_mex_data3d_c.cpp
+++ b/matlab/mex/astra_mex_data3d_c.cpp
@@ -32,6 +32,7 @@ $Id$
*/
#include <mex.h>
#include "mexHelpFunctions.h"
+#include "mexInitFunctions.h"
#include "mexCopyDataHelpFunctions.h"
#include "mexDataManagerHelpFunctions.h"
@@ -79,11 +80,11 @@ void astra_mex_data3d_create(int& nlhs, mxArray* plhs[], int& nrhs, const mxArra
}
if (data && !checkDataType(data)) {
- mexErrMsgTxt("Data must be single or double.");
+ mexErrMsgTxt("Data must be single, double or logical.");
return;
}
- const string sDataType = mex_util_get_string(prhs[1]);
+ const string sDataType = mexToString(prhs[1]);
// step2: Allocate data
CFloat32Data3DMemory* pDataObject3D =
@@ -152,7 +153,7 @@ void astra_mex_data3d_link(int& nlhs, mxArray* plhs[], int& nrhs, const mxArray*
return;
}
- string sDataType = mex_util_get_string(prhs[1]);
+ string sDataType = mexToString(prhs[1]);
// step2: Allocate data
CFloat32Data3DMemory* pDataObject3D =
@@ -266,48 +267,46 @@ void astra_mex_data3d_dimensions(int nlhs, mxArray* plhs[], int nrhs, const mxAr
}
//-----------------------------------------------------------------------------------------
-/**
- * [geom] = astra_mex_data3d('geometry', id);
+/** geom = astra_mex_data3d('get_geometry', id);
+ *
+ * Fetch the geometry of a 3d data object stored in the astra-library.
+ * id: identifier of the 3d data object as stored in the astra-library.
+ * geom: MATLAB-struct containing information about the used geometry.
*/
-void astra_mex_data3d_geometry(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+void astra_mex_data3d_get_geometry(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
{
- //// Get input
- //if (nrhs < 2) {
- // mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
- // return;
- //}
- //int iDid = (int)(mxGetScalar(prhs[1]));
-
- //// Get data object
- //CFloat32Data3D* pData = CData3DManager::getSingleton().get(iDid);
- //if (!pData) {
- // mexErrMsgTxt("DataObject not valid. \n");
- // return;
- //}
-
- //// Projection Data
- //if (pData->getType() == CFloat32Data3D::PROJECTION) {
- // CFloat32ProjectionData3D* pData2 = dynamic_cast<CFloat32ProjectionData3D*>(pData);
- // CProjectionGeometry3D* pProjGeom = pData2->getGeometry();
- // XMLDocument* config = pProjGeom->toXML();
-
- // if (1 <= nlhs) {
- // plhs[0] = XML2struct(config);
- // }
- //}
- //// Volume Data
- //else if (pData->getType() == CFloat32Data3D::VOLUME) {
- //// CFloat32VolumeData3D* pData2 = dynamic_cast<CFloat32VolumeData3D*>(pData);
- //// CVolumeGeometry2D* pVolGeom = pData2->getGeometry2D(iSliceNr);
- //// if (1 <= nlhs) {
- //// plhs[0] = createVolumeGeometryStruct(pVolGeom);
- //// }
- //}
- //// Error
- //else {
- // mexErrMsgTxt("Type not valid. \n");
- // return;
- //}
+ // parse input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ if (!mxIsDouble(prhs[1])) {
+ mexErrMsgTxt("Identifier should be a scalar value. \n");
+ return;
+ }
+ int iDataID = (int)(mxGetScalar(prhs[1]));
+
+ // fetch data object
+ CFloat32Data3D* pDataObject = astra::CData3DManager::getSingleton().get(iDataID);
+ if (!pDataObject || !pDataObject->isInitialized()) {
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+ }
+
+ // create output
+ if (1 <= nlhs) {
+ if (pDataObject->getType() == CFloat32Data3D::PROJECTION) {
+ CFloat32ProjectionData3DMemory* pDataObject2 = dynamic_cast<CFloat32ProjectionData3DMemory*>(pDataObject);
+ plhs[0] = configToStruct(pDataObject2->getGeometry()->getConfiguration());
+
+ }
+ else if (pDataObject->getType() == CFloat32Data3D::VOLUME) {
+ CFloat32VolumeData3DMemory* pDataObject2 = dynamic_cast<CFloat32VolumeData3DMemory*>(pDataObject);
+ plhs[0] = configToStruct(pDataObject2->getGeometry()->getConfiguration());
+ }
+ }
+
+
}
//-----------------------------------------------------------------------------------------
@@ -367,12 +366,14 @@ void mexFunction(int nlhs, mxArray* plhs[],
// INPUT: Mode
string sMode = "";
if (1 <= nrhs) {
- sMode = mex_util_get_string(prhs[0]);
+ sMode = mexToString(prhs[0]);
} else {
printHelp();
return;
}
+ initASTRAMex();
+
// 3D data
if (sMode == std::string("create")) {
astra_mex_data3d_create(nlhs, plhs, nrhs, prhs);
@@ -395,8 +396,8 @@ void mexFunction(int nlhs, mxArray* plhs[],
astra_mex_data3d_info(nlhs, plhs, nrhs, prhs);
} else if (sMode == std::string("dimensions")) {
astra_mex_data3d_dimensions(nlhs, plhs, nrhs, prhs);
- } else if (sMode == std::string("geometry")) {
- astra_mex_data3d_geometry(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("get_geometry")) {
+ astra_mex_data3d_get_geometry(nlhs, plhs, nrhs, prhs);
} else {
printHelp();
}
diff --git a/matlab/mex/astra_mex_data3d_vc09.vcproj b/matlab/mex/astra_mex_data3d_vc09.vcproj
new file mode 100644
index 0000000..fd861a3
--- /dev/null
+++ b/matlab/mex/astra_mex_data3d_vc09.vcproj
@@ -0,0 +1,628 @@
+<?xml version="1.0" encoding="Windows-1252"?>
+<VisualStudioProject
+ ProjectType="Visual C++"
+ Version="9.00"
+ Name="astra_mex_data3d"
+ ProjectGUID="{0BEC029B-0929-4BF9-BD8B-9C9806A52065}"
+ RootNamespace="astraMatlab"
+ TargetFrameworkVersion="131072"
+ >
+ <Platforms>
+ <Platform
+ Name="Win32"
+ />
+ <Platform
+ Name="x64"
+ />
+ </Platforms>
+ <ToolFiles>
+ </ToolFiles>
+ <Configurations>
+ <Configuration
+ Name="Debug_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
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+ </Configurations>
+ <References>
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+ <Files>
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index 064a4a1..1c3c620 100644
--- a/matlab/mex/astra_mex_data3d_vc11.vcxproj
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+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Debug;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
<ClCompile>
- <Optimization>MaxSpeed</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions);__SSE2__</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <Optimization>Disabled</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>AstraCuda64.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\x64\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra64D.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions);__SSE2__</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
<EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>AstraCuda32D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw32</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>AstraCuda32.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
- <Midl>
- <TargetEnvironment>X64</TargetEnvironment>
- </Midl>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions);__SSE2__</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <EnableEnhancedInstructionSet>NotSet</EnableEnhancedInstructionSet>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>AstraCuda64D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>AstraCuda64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
- <TargetMachine>MachineX64</TargetMachine>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
<EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
- <PreprocessorDefinitions>_WINDLL;%(PreprocessorDefinitions);__SSE2__</PreprocessorDefinitions>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>Astra32D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw32</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra32.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Release;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
- <Midl>
- <TargetEnvironment>X64</TargetEnvironment>
- </Midl>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <EnableEnhancedInstructionSet>NotSet</EnableEnhancedInstructionSet>
- <PreprocessorDefinitions>_WINDLL;%(PreprocessorDefinitions);__SSE2__</PreprocessorDefinitions>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>Astra64D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Release;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
- <TargetMachine>MachineX64</TargetMachine>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
<ItemGroup>
<ClCompile Include="astra_mex_data3d_c.cpp" />
<ClCompile Include="mexHelpFunctions.cpp" />
- <ClCompile Include="mexCopyDataHelpFunctions.cpp">
- <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">false</ExcludedFromBuild>
- </ClCompile>
+ <ClCompile Include="mexCopyDataHelpFunctions.cpp" />
<ClCompile Include="mexDataManagerHelpFunctions.cpp" />
+ <ClCompile Include="mexInitFunctions.cpp" />
</ItemGroup>
<ItemGroup>
<ClInclude Include="mexHelpFunctions.h" />
- <ClInclude Include="mexCopyDataHelpFunctions.h">
- <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">false</ExcludedFromBuild>
- </ClInclude>
+ <ClInclude Include="mexCopyDataHelpFunctions.h" />
<ClInclude Include="mexDataManagerHelpFunctions.h" />
+ <ClInclude Include="mexInitFunctions.h" />
</ItemGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
<ImportGroup Label="ExtensionTargets">
diff --git a/matlab/mex/astra_mex_log_c.cpp b/matlab/mex/astra_mex_log_c.cpp
new file mode 100644
index 0000000..ea4621e
--- /dev/null
+++ b/matlab/mex/astra_mex_log_c.cpp
@@ -0,0 +1,305 @@
+/*
+-----------------------------------------------------------------------
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
+
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+
+This file is part of the ASTRA Toolbox.
+
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+/** \file astra_mex_log_c.cpp
+ *
+ * \brief Manages astra logging
+ */
+#include <mex.h>
+#include "mexHelpFunctions.h"
+#include "mexInitFunctions.h"
+
+#include "astra/Logging.h"
+
+using namespace std;
+using namespace astra;
+//-----------------------------------------------------------------------------------------
+/** astra_mex_log('debug', file, line, message);
+ *
+ * Log a debug message.
+ * file: Originating file name
+ * line: Originating line number
+ * message: Log message.
+ */
+void astra_mex_log_debug(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (nrhs < 4) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ string filename = mexToString(prhs[1]);
+ int linenumber = (int)mxGetScalar(prhs[2]);
+ string message = mexToString(prhs[3]);
+ astra::CLogger::debug(filename.c_str(),linenumber,message.c_str());
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_log('info', file, line, message);
+ *
+ * Log an info message.
+ * file: Originating file name
+ * line: Originating line number
+ * message: Log message.
+ */
+void astra_mex_log_info(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (nrhs < 4) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ string filename = mexToString(prhs[1]);
+ int linenumber = (int)mxGetScalar(prhs[2]);
+ string message = mexToString(prhs[3]);
+ astra::CLogger::info(filename.c_str(),linenumber,message.c_str());
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_log('warn', file, line, message);
+ *
+ * Log a warning message.
+ * file: Originating file name
+ * line: Originating line number
+ * message: Log message.
+ */
+void astra_mex_log_warn(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (nrhs < 4) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ string filename = mexToString(prhs[1]);
+ int linenumber = (int)mxGetScalar(prhs[2]);
+ string message = mexToString(prhs[3]);
+ astra::CLogger::warn(filename.c_str(),linenumber,message.c_str());
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_log('error', file, line, message);
+ *
+ * Log an error message.
+ * file: Originating file name
+ * line: Originating line number
+ * message: Log message.
+ */
+void astra_mex_log_error(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (nrhs < 4) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ string filename = mexToString(prhs[1]);
+ int linenumber = (int)mxGetScalar(prhs[2]);
+ string message = mexToString(prhs[3]);
+ astra::CLogger::error(filename.c_str(),linenumber,message.c_str());
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_log('enable', type);
+ *
+ * Enable logging.
+ * type: which output to enable ('all', 'file', 'screen')
+ */
+void astra_mex_log_enable(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ string sType = mexToString(prhs[1]);
+ if(sType == "all"){
+ astra::CLogger::enable();
+ }else if(sType == "file"){
+ astra::CLogger::enableFile();
+ }else if(sType == "screen"){
+ astra::CLogger::enableScreen();
+ } else {
+ mexErrMsgTxt("Specify which output to enable ('all', 'file', or 'screen')");
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_log('disable', type);
+ *
+ * Disable logging.
+ * type: which output to disable ('all', 'file', 'screen')
+ */
+void astra_mex_log_disable(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ string sType = mexToString(prhs[1]);
+ if(sType == "all"){
+ astra::CLogger::disable();
+ }else if(sType == "file"){
+ astra::CLogger::disableFile();
+ }else if(sType == "screen"){
+ astra::CLogger::disableScreen();
+ } else {
+ mexErrMsgTxt("Specify which output to disable ('all', 'file', or 'screen')");
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_log('format', type, fmt);
+ *
+ * Enable logging.
+ * type: which output to format ('file', 'screen')
+ * fmt: format string
+ * Here are the substitutions you may use:
+ * %f: Source file name generating the log call.
+ * %n: Source line number where the log call was made.
+ * %m: The message text sent to the logger (after printf formatting).
+ * %d: The current date, formatted using the logger's date format.
+ * %t: The current time, formatted using the logger's time format.
+ * %l: The log level (one of "DEBUG", "INFO", "WARN", or "ERROR").
+ * %%: A literal percent sign.
+ * The default format string is "%d %t %f(%n): %l: %m\n".
+ */
+void astra_mex_log_format(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (nrhs < 3) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ string sType = mexToString(prhs[1]);
+ string sFormat = mexToString(prhs[2]);
+ if (!sFormat.empty())
+ {
+ char lastChar = *sFormat.rbegin();
+ if (lastChar!='\n'){
+ sFormat += '\n';
+ }
+ }else{
+ sFormat += '\n';
+ }
+ if(sType == "file"){
+ astra::CLogger::setFormatFile(sFormat.c_str());
+ }else if(sType == "screen"){
+ astra::CLogger::setFormatScreen(sFormat.c_str());
+ } else {
+ mexErrMsgTxt("Specify which output to format ('file' or 'screen')");
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_log('output', type, output, level);
+ *
+ * Set output file / output screen.
+ * type: which output to set ('file', 'screen')
+ * output: which output file / screen to use:
+ * 'file': filename
+ * 'screen': 'stdout' or 'stderr'
+ * level: logging level to use ('debug', 'info', 'warn', or 'error')
+ */
+void astra_mex_log_output(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (nrhs < 4) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ string sType = mexToString(prhs[1]);
+ string sOutput = mexToString(prhs[2]);
+ string sLevel = mexToString(prhs[3]);
+ log_level eLevel;
+ if(sLevel == "debug"){
+ eLevel = LOG_DEBUG;
+ }else if(sLevel == "info"){
+ eLevel = LOG_INFO;
+ }else if(sLevel == "warn"){
+ eLevel = LOG_WARN;
+ }else if(sLevel == "error"){
+ eLevel = LOG_ERROR;
+ }else{
+ mexErrMsgTxt("Specify which log level to use ('debug', 'info', 'warn', or 'error')");
+ }
+ if(sType == "file"){
+ astra::CLogger::setOutputFile(sOutput.c_str(),eLevel);
+ }else if(sType == "screen"){
+ int fd;
+ if(sOutput == "stdout"){
+ fd=1;
+ }else if(sOutput == "stderr"){
+ fd=2;
+ }else{
+ mexErrMsgTxt("Specify which screen to output to ('stdout' or 'stderr')");
+ }
+ astra::CLogger::setOutputScreen(fd,eLevel);
+ } else {
+ mexErrMsgTxt("Specify which output to set ('file' or 'screen')");
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+static void printHelp()
+{
+ mexPrintf("Please specify a mode of operation.\n");
+ mexPrintf("Valid modes: debug, info, warn, error, enable, disable, format, output\n");
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * ... = astra_mex_log(mode, ...);
+ */
+void mexFunction(int nlhs, mxArray* plhs[],
+ int nrhs, const mxArray* prhs[])
+{
+ // INPUT: Mode
+ string sMode = "";
+ if (1 <= nrhs) {
+ sMode = mexToString(prhs[0]);
+ } else {
+ printHelp();
+ return;
+ }
+
+ initASTRAMex();
+
+ // SWITCH (MODE)
+ if (sMode == "debug") {
+ astra_mex_log_debug(nlhs, plhs, nrhs, prhs);
+ }else if (sMode == "info") {
+ astra_mex_log_info(nlhs, plhs, nrhs, prhs);
+ }else if (sMode == "warn") {
+ astra_mex_log_warn(nlhs, plhs, nrhs, prhs);
+ }else if (sMode == "error") {
+ astra_mex_log_error(nlhs, plhs, nrhs, prhs);
+ }else if (sMode == "enable") {
+ astra_mex_log_enable(nlhs, plhs, nrhs, prhs);
+ }else if (sMode == "disable") {
+ astra_mex_log_disable(nlhs, plhs, nrhs, prhs);
+ }else if (sMode == "format") {
+ astra_mex_log_format(nlhs, plhs, nrhs, prhs);
+ }else if (sMode == "output") {
+ astra_mex_log_output(nlhs, plhs, nrhs, prhs);
+ } else {
+ printHelp();
+ }
+ return;
+}
diff --git a/matlab/mex/astra_mex_data3d_vc08.vcproj b/matlab/mex/astra_mex_log_vc09.vcproj
index 2e69c16..0e0d469 100644
--- a/matlab/mex/astra_mex_data3d_vc08.vcproj
+++ b/matlab/mex/astra_mex_log_vc09.vcproj
@@ -2,8 +2,8 @@
<VisualStudioProject
ProjectType="Visual C++"
Version="9.00"
- Name="astra_mex_data3d"
- ProjectGUID="{0BEC029B-0929-4BF9-BD8B-9C9806A52065}"
+ Name="astra_mex_log"
+ ProjectGUID="{CA2840B3-DA68-41B5-AC57-F5DFD20ED8F8}"
RootNamespace="astraMatlab"
TargetFrameworkVersion="131072"
>
@@ -19,7 +19,7 @@
</ToolFiles>
<Configurations>
<Configuration
- Name="Release|Win32"
+ Name="Debug_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -40,12 +40,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -55,15 +49,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -84,9 +69,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release|x64"
+ Name="Debug_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -107,12 +111,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -122,15 +120,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -151,9 +140,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|Win32"
+ Name="Debug|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -174,13 +181,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -190,15 +190,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -219,9 +210,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|x64"
+ Name="Debug|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -242,13 +252,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -258,15 +261,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -287,9 +281,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|Win32"
+ Name="Release_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -310,14 +322,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -327,16 +331,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -357,9 +351,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|x64"
+ Name="Release_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -378,14 +391,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
/>
<Tool
Name="VCManagedResourceCompilerTool"
@@ -397,16 +402,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -427,9 +422,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug|Win32"
+ Name="Release|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -450,13 +463,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -466,16 +472,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -496,9 +492,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug|x64"
+ Name="Release|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -517,13 +532,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="3"
/>
<Tool
Name="VCManagedResourceCompilerTool"
@@ -535,16 +543,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -565,13 +563,31 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
+ />
</Configuration>
</Configurations>
<References>
</References>
<Files>
<File
- RelativePath=".\astra_mex_data3d_c.cpp"
+ RelativePath=".\astra_mex_log_c.cpp"
>
</File>
<File
@@ -582,6 +598,14 @@
RelativePath=".\mexHelpFunctions.h"
>
</File>
+ <File
+ RelativePath=".\mexInitFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexInitFunctions.h"
+ >
+ </File>
</Files>
<Globals>
</Globals>
diff --git a/matlab/mex/astra_mex_log_vc11.vcxproj b/matlab/mex/astra_mex_log_vc11.vcxproj
new file mode 100644
index 0000000..0a939cf
--- /dev/null
+++ b/matlab/mex/astra_mex_log_vc11.vcxproj
@@ -0,0 +1,306 @@
+<?xml version="1.0" encoding="utf-8"?>
+<Project DefaultTargets="Build" ToolsVersion="4.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
+ <ItemGroup Label="ProjectConfigurations">
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+ <Platform>Win32</Platform>
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+ <ProjectConfiguration Include="Debug_CUDA|x64">
+ <Configuration>Debug_CUDA</Configuration>
+ <Platform>x64</Platform>
+ </ProjectConfiguration>
+ <ProjectConfiguration Include="Debug|Win32">
+ <Configuration>Debug</Configuration>
+ <Platform>Win32</Platform>
+ </ProjectConfiguration>
+ <ProjectConfiguration Include="Debug|x64">
+ <Configuration>Debug</Configuration>
+ <Platform>x64</Platform>
+ </ProjectConfiguration>
+ <ProjectConfiguration Include="Release_CUDA|Win32">
+ <Configuration>Release_CUDA</Configuration>
+ <Platform>Win32</Platform>
+ </ProjectConfiguration>
+ <ProjectConfiguration Include="Release_CUDA|x64">
+ <Configuration>Release_CUDA</Configuration>
+ <Platform>x64</Platform>
+ </ProjectConfiguration>
+ <ProjectConfiguration Include="Release|Win32">
+ <Configuration>Release</Configuration>
+ <Platform>Win32</Platform>
+ </ProjectConfiguration>
+ <ProjectConfiguration Include="Release|x64">
+ <Configuration>Release</Configuration>
+ <Platform>x64</Platform>
+ </ProjectConfiguration>
+ </ItemGroup>
+ <PropertyGroup Label="Globals">
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+ <ProjectGuid>{03B833F5-4FD6-4FBE-AAF4-E3305CD56D2E}</ProjectGuid>
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+ <Import Project="$(VCTargetsPath)\Microsoft.Cpp.Default.props" />
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'" Label="Configuration">
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+ <AdditionalDependencies>Astra32D.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
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+ <OpenMPSupport>true</OpenMPSupport>
+ <Optimization>Disabled</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
+ </ClCompile>
+ <Link>
+ <OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
+ <AdditionalDependencies>Astra64D.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Debug;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
+ </Link>
+ </ItemDefinitionGroup>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
+ <ClCompile>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
+ <OpenMPSupport>true</OpenMPSupport>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
+ </ClCompile>
+ <Link>
+ <OutputFile>$(OutDir)$(ProjectName)_c.mexw32</OutputFile>
+ <AdditionalDependencies>AstraCuda32.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
+ </Link>
+ </ItemDefinitionGroup>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
+ <ClCompile>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
+ <OpenMPSupport>true</OpenMPSupport>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
+ </ClCompile>
+ <Link>
+ <OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
+ <AdditionalDependencies>AstraCuda64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
+ </Link>
+ </ItemDefinitionGroup>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
+ <ClCompile>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
+ <OpenMPSupport>true</OpenMPSupport>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
+ </ClCompile>
+ <Link>
+ <OutputFile>$(OutDir)$(ProjectName)_c.mexw32</OutputFile>
+ <AdditionalDependencies>Astra32.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Release;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
+ </Link>
+ </ItemDefinitionGroup>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
+ <ClCompile>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
+ <OpenMPSupport>true</OpenMPSupport>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
+ </ClCompile>
+ <Link>
+ <OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
+ <AdditionalDependencies>Astra64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Release;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
+ </Link>
+ </ItemDefinitionGroup>
+ <ItemGroup>
+ <ClCompile Include="astra_mex_log_c.cpp" />
+ <ClCompile Include="mexHelpFunctions.cpp" />
+ <ClCompile Include="mexInitFunctions.cpp" />
+ </ItemGroup>
+ <ItemGroup>
+ <ClInclude Include="mexHelpFunctions.h" />
+ <ClInclude Include="mexInitFunctions.h" />
+ </ItemGroup>
+ <Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
+ <ImportGroup Label="ExtensionTargets">
+ </ImportGroup>
+</Project> \ No newline at end of file
diff --git a/matlab/mex/astra_mex_matrix_c.cpp b/matlab/mex/astra_mex_matrix_c.cpp
index 016566a..aa31383 100644
--- a/matlab/mex/astra_mex_matrix_c.cpp
+++ b/matlab/mex/astra_mex_matrix_c.cpp
@@ -32,6 +32,7 @@ $Id$
*/
#include <mex.h>
#include "mexHelpFunctions.h"
+#include "mexInitFunctions.h"
#include <list>
@@ -406,12 +407,14 @@ void mexFunction(int nlhs, mxArray* plhs[],
// INPUT0: Mode
string sMode = "";
if (1 <= nrhs) {
- sMode = mex_util_get_string(prhs[0]);
+ sMode = mexToString(prhs[0]);
} else {
printHelp();
return;
}
+ initASTRAMex();
+
// SWITCH (MODE)
if (sMode == std::string("get")) {
astra_mex_matrix_get(nlhs, plhs, nrhs, prhs);
diff --git a/matlab/mex/astra_mex_matrix_vc08.vcproj b/matlab/mex/astra_mex_matrix_vc09.vcproj
index 47509f6..3aa17a5 100644
--- a/matlab/mex/astra_mex_matrix_vc08.vcproj
+++ b/matlab/mex/astra_mex_matrix_vc09.vcproj
@@ -19,7 +19,7 @@
</ToolFiles>
<Configurations>
<Configuration
- Name="Release|Win32"
+ Name="Debug_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -40,12 +40,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -55,15 +49,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -84,9 +69,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release|x64"
+ Name="Debug_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -107,12 +111,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -122,15 +120,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -151,9 +140,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|Win32"
+ Name="Debug|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -174,13 +181,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -190,15 +190,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -219,9 +210,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|x64"
+ Name="Debug|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -242,13 +252,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -258,15 +261,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -287,9 +281,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|Win32"
+ Name="Release_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -310,14 +322,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -327,16 +331,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -357,9 +351,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|x64"
+ Name="Release_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -378,16 +391,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="&quot;$(CUDA_INC_PATH)&quot;;$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
- BrowseInformation="1"
- DebugInformationFormat="4"
/>
<Tool
Name="VCManagedResourceCompilerTool"
@@ -399,17 +402,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -430,9 +422,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug|Win32"
+ Name="Release|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -453,13 +463,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -469,16 +472,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -499,9 +492,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug|x64"
+ Name="Release|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -520,13 +532,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="3"
/>
<Tool
Name="VCManagedResourceCompilerTool"
@@ -538,16 +543,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -568,6 +563,24 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
+ />
</Configuration>
</Configurations>
<References>
@@ -585,6 +598,14 @@
RelativePath=".\mexHelpFunctions.h"
>
</File>
+ <File
+ RelativePath=".\mexInitFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexInitFunctions.h"
+ >
+ </File>
</Files>
<Globals>
</Globals>
diff --git a/matlab/mex/astra_mex_matrix_vc11.vcxproj b/matlab/mex/astra_mex_matrix_vc11.vcxproj
index 12393bf..abf86a7 100644
--- a/matlab/mex/astra_mex_matrix_vc11.vcxproj
+++ b/matlab/mex/astra_mex_matrix_vc11.vcxproj
@@ -40,19 +40,15 @@
<RootNamespace>astraMatlab</RootNamespace>
</PropertyGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.Default.props" />
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
- <ConfigurationType>DynamicLibrary</ConfigurationType>
- <PlatformToolset>v110</PlatformToolset>
- </PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
@@ -60,7 +56,7 @@
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
@@ -68,6 +64,10 @@
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
+ <ConfigurationType>DynamicLibrary</ConfigurationType>
+ <PlatformToolset>v110</PlatformToolset>
+ </PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
@@ -75,213 +75,230 @@
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.props" />
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+ <GenerateDebugInformation>true</GenerateDebugInformation>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
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<OpenMPSupport>true</OpenMPSupport>
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<OpenMPSupport>true</OpenMPSupport>
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+ <Optimization>MaxSpeed</Optimization>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
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<OpenMPSupport>true</OpenMPSupport>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
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<ClCompile Include="astra_mex_matrix_c.cpp" />
<ClCompile Include="mexHelpFunctions.cpp" />
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- <ClInclude Include="mexDataManagerHelpFunctions.h" />
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diff --git a/matlab/mex/astra_mex_projector3d_c.cpp b/matlab/mex/astra_mex_projector3d_c.cpp
index 25980f9..c3b547f 100644
--- a/matlab/mex/astra_mex_projector3d_c.cpp
+++ b/matlab/mex/astra_mex_projector3d_c.cpp
@@ -33,6 +33,7 @@ $Id$
#include <mex.h>
#include "mexHelpFunctions.h"
+#include "mexInitFunctions.h"
#include "astra/Globals.h"
@@ -65,16 +66,16 @@ void astra_mex_projector3d_create(int nlhs, mxArray* plhs[], int nrhs, const mxA
}
// turn MATLAB struct to an XML-based Config object
- XMLDocument* xml = struct2XML("Projector3D", prhs[1]);
- Config cfg;
- cfg.self = xml->getRootNode();
+ Config* cfg = structToConfig("Projector3D", prhs[1]);
// create algorithm
- CProjector3D* pProj = CProjector3DFactory::getSingleton().create(cfg);
+ CProjector3D* pProj = CProjector3DFactory::getSingleton().create(*cfg);
if (pProj == NULL) {
+ delete cfg;
mexErrMsgTxt("Error creating Projector3D. \n");
return;
}
+ delete cfg;
// store projector
int iIndex = CProjector3DManager::getSingleton().store(pProj);
@@ -135,16 +136,16 @@ void astra_mex_projector3d_get_projection_geometry(int nlhs, mxArray* plhs[], in
}
// step3: get projection_geometry and turn it into a MATLAB struct
- //if (1 <= nlhs) {
- // plhs[0] = createProjectionGeometryStruct(pProjector->getProjectionGeometry());
- //}
+ if (1 <= nlhs) {
+ plhs[0] = configToStruct(pProjector->getProjectionGeometry()->getConfiguration());
+ }
}
//-----------------------------------------------------------------------------------------
/**
* [recon_geom] = astra_mex_projector3d('get_volume_geometry', pid);
*/
-void astra_mex_projector3d_get_reconstruction_geometry(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+void astra_mex_projector3d_get_volume_geometry(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
{
// step1: read input
if (nrhs < 2) {
@@ -161,9 +162,9 @@ void astra_mex_projector3d_get_reconstruction_geometry(int nlhs, mxArray* plhs[]
}
// step3: get projection_geometry and turn it into a MATLAB struct
- //if (1 <= nlhs) {
- // plhs[0] = createVolumeGeometryStruct(pProjector->getVolumeGeometry());
- //}
+ if (1 <= nlhs) {
+ plhs[0] = configToStruct(pProjector->getVolumeGeometry()->getConfiguration());
+ }
}
//-----------------------------------------------------------------------------------------
@@ -397,12 +398,14 @@ void mexFunction(int nlhs, mxArray* plhs[],
// INPUT: Mode
string sMode = "";
if (1 <= nrhs) {
- sMode = mex_util_get_string(prhs[0]);
+ sMode = mexToString(prhs[0]);
} else {
printHelp();
return;
}
+ initASTRAMex();
+
// SWITCH (MODE)
if (sMode == "create") {
astra_mex_projector3d_create(nlhs, plhs, nrhs, prhs);
@@ -413,7 +416,7 @@ void mexFunction(int nlhs, mxArray* plhs[],
} else if (sMode == "get_projection_geometry") {
astra_mex_projector3d_get_projection_geometry(nlhs, plhs, nrhs, prhs);
} else if (sMode == "get_volume_geometry") {
- astra_mex_projector3d_get_reconstruction_geometry(nlhs, plhs, nrhs, prhs);
+ astra_mex_projector3d_get_volume_geometry(nlhs, plhs, nrhs, prhs);
} else if (sMode == "weights_single_ray") {
astra_mex_projector_weights_single_ray(nlhs, plhs, nrhs, prhs);
//} else if (sMode == "weights_projection") {
diff --git a/matlab/mex/astra_mex_projector3d_vc08.vcproj b/matlab/mex/astra_mex_projector3d_vc09.vcproj
index bedc53b..b9464a2 100644
--- a/matlab/mex/astra_mex_projector3d_vc08.vcproj
+++ b/matlab/mex/astra_mex_projector3d_vc09.vcproj
@@ -19,7 +19,7 @@
</ToolFiles>
<Configurations>
<Configuration
- Name="Release|Win32"
+ Name="Debug_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -40,12 +40,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -55,15 +49,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -84,9 +69,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release|x64"
+ Name="Debug_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -107,12 +111,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -122,15 +120,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -151,9 +140,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|Win32"
+ Name="Debug|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -174,13 +181,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -190,15 +190,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -219,9 +210,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|x64"
+ Name="Debug|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -242,13 +252,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -258,15 +261,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -287,9 +281,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|Win32"
+ Name="Release_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -310,14 +322,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -327,16 +331,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -357,9 +351,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|x64"
+ Name="Release_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -378,14 +391,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
/>
<Tool
Name="VCManagedResourceCompilerTool"
@@ -397,16 +402,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -427,9 +422,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug|Win32"
+ Name="Release|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -450,13 +463,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -466,16 +472,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -496,9 +492,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug|x64"
+ Name="Release|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -517,13 +532,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="3"
/>
<Tool
Name="VCManagedResourceCompilerTool"
@@ -535,16 +543,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -565,6 +563,24 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
+ />
</Configuration>
</Configurations>
<References>
@@ -582,6 +598,14 @@
RelativePath=".\mexHelpFunctions.h"
>
</File>
+ <File
+ RelativePath=".\mexInitFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexInitFunctions.h"
+ >
+ </File>
</Files>
<Globals>
</Globals>
diff --git a/matlab/mex/astra_mex_projector3d_vc11.vcxproj b/matlab/mex/astra_mex_projector3d_vc11.vcxproj
index 7981806..42eb0f1 100644
--- a/matlab/mex/astra_mex_projector3d_vc11.vcxproj
+++ b/matlab/mex/astra_mex_projector3d_vc11.vcxproj
@@ -40,19 +40,15 @@
<RootNamespace>astraMatlab</RootNamespace>
</PropertyGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.Default.props" />
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
- <ConfigurationType>DynamicLibrary</ConfigurationType>
- <PlatformToolset>v110</PlatformToolset>
- </PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
@@ -60,7 +56,7 @@
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
@@ -68,6 +64,10 @@
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
+ <ConfigurationType>DynamicLibrary</ConfigurationType>
+ <PlatformToolset>v110</PlatformToolset>
+ </PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
@@ -75,210 +75,230 @@
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.props" />
<ImportGroup Label="ExtensionSettings">
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
<PropertyGroup Label="UserMacros" />
<PropertyGroup>
<_ProjectFileVersion>11.0.60610.1</_ProjectFileVersion>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw64</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
<TargetName>$(ProjectName)_c</TargetName>
<TargetExt>.mexw64</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw64</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw64</TargetExt>
</PropertyGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
<ClCompile>
- <Optimization>MaxSpeed</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>Disabled</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>Astra32.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw32</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>AstraCuda32D.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Debug_CUDA;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
<ClCompile>
- <Optimization>MaxSpeed</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <Optimization>Disabled</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>Astra64.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>AstraCuda64D.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Debug_CUDA;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
<ClCompile>
- <Optimization>MaxSpeed</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions)</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>Disabled</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>AstraCuda32.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw32</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra32D.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Debug;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
<ClCompile>
- <Optimization>MaxSpeed</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions)</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <Optimization>Disabled</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>AstraCuda64.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\x64\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra64D.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Debug;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_INC_PATH);..\..\lib\include;..\..\lib\include\cuda;..\..\include\;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions)</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>AstraCuda32D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw32</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>AstraCuda32.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
- <Midl>
- <TargetEnvironment>X64</TargetEnvironment>
- </Midl>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_INC_PATH);..\..\lib\include;..\..\lib\include\cuda;..\..\include\;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions)</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>AstraCuda64D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>AstraCuda64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
- <TargetMachine>MachineX64</TargetMachine>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>Astra32D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw32</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra32.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Release;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
- <Midl>
- <TargetEnvironment>X64</TargetEnvironment>
- </Midl>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>Astra64D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Release;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
- <TargetMachine>MachineX64</TargetMachine>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
<ItemGroup>
<ClCompile Include="astra_mex_projector3d_c.cpp" />
<ClCompile Include="mexHelpFunctions.cpp" />
- <ClCompile Include="mexCopyDataHelpFunctions.cpp">
- <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">true</ExcludedFromBuild>
- </ClCompile>
- <ClCompile Include="mexDataManagerHelpFunctions.cpp" />
+ <ClCompile Include="mexInitFunctions.cpp" />
</ItemGroup>
<ItemGroup>
<ClInclude Include="mexHelpFunctions.h" />
- <ClInclude Include="mexCopyDataHelpFunctions.h">
- <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">true</ExcludedFromBuild>
- </ClInclude>
- <ClInclude Include="mexDataManagerHelpFunctions.h" />
+ <ClInclude Include="mexInitFunctions.h" />
</ItemGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
<ImportGroup Label="ExtensionTargets">
diff --git a/matlab/mex/astra_mex_projector_c.cpp b/matlab/mex/astra_mex_projector_c.cpp
index de73f07..204ba8e 100644
--- a/matlab/mex/astra_mex_projector_c.cpp
+++ b/matlab/mex/astra_mex_projector_c.cpp
@@ -34,6 +34,7 @@ $Id$
#include <mex.h>
#include "mexHelpFunctions.h"
+#include "mexInitFunctions.h"
#include "astra/AstraObjectManager.h"
#include "astra/Projector2D.h"
@@ -74,19 +75,16 @@ void astra_mex_projector_create(int nlhs, mxArray* plhs[], int nrhs, const mxArr
// turn MATLAB struct to an XML-based Config object
- XMLDocument* xml = struct2XML("Projector2D", prhs[1]);
- Config cfg;
- cfg.self = xml->getRootNode();
+ Config* cfg = structToConfig("Projector2D", prhs[1]);
// create algorithm
- CProjector2D* pProj = CProjector2DFactory::getSingleton().create(cfg);
+ CProjector2D* pProj = CProjector2DFactory::getSingleton().create(*cfg);
if (pProj == NULL) {
- delete xml;
+ delete cfg;
mexErrMsgTxt("Error creating projector. \n");
return;
}
-
- delete xml;
+ delete cfg;
// store projector
iIndex = CProjector2DManager::getSingleton().store(pProj);
@@ -162,7 +160,7 @@ void astra_mex_projector_projection_geometry(int nlhs, mxArray* plhs[], int nrhs
// step3: get projection_geometry and turn it into a MATLAB struct
if (1 <= nlhs) {
- plhs[0] = createProjectionGeometryStruct(pProjector->getProjectionGeometry());
+ plhs[0] = configToStruct(pProjector->getProjectionGeometry()->getConfiguration());
}
}
@@ -191,7 +189,8 @@ void astra_mex_projector_volume_geometry(int nlhs, mxArray* plhs[], int nrhs, co
// step3: get projection_geometry and turn it into a MATLAB struct
if (1 <= nlhs) {
- plhs[0] = createVolumeGeometryStruct(pProjector->getVolumeGeometry());
+ plhs[0] = configToStruct(pProjector->getVolumeGeometry()->getConfiguration());
+
}
}
@@ -472,12 +471,14 @@ void mexFunction(int nlhs, mxArray* plhs[],
// INPUT: Mode
string sMode = "";
if (1 <= nrhs) {
- sMode = mex_util_get_string(prhs[0]);
+ sMode = mexToString(prhs[0]);
} else {
printHelp();
return;
}
+ initASTRAMex();
+
// SWITCH (MODE)
if (sMode == "create") {
astra_mex_projector_create(nlhs, plhs, nrhs, prhs);
diff --git a/matlab/mex/astra_mex_projector_vc08.vcproj b/matlab/mex/astra_mex_projector_vc09.vcproj
index 1380061..05c207f 100644
--- a/matlab/mex/astra_mex_projector_vc08.vcproj
+++ b/matlab/mex/astra_mex_projector_vc09.vcproj
@@ -19,7 +19,7 @@
</ToolFiles>
<Configurations>
<Configuration
- Name="Release|Win32"
+ Name="Debug_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -40,12 +40,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -55,15 +49,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -84,9 +69,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release|x64"
+ Name="Debug_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -107,12 +111,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -122,15 +120,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -151,9 +140,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|Win32"
+ Name="Debug|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -174,13 +181,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -190,15 +190,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -219,9 +210,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|x64"
+ Name="Debug|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -242,13 +252,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="&quot;$(MATLAB_ROOT)\extern\include\&quot;;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -258,15 +261,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -287,9 +281,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|Win32"
+ Name="Release_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -310,14 +322,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -327,16 +331,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -357,9 +351,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|x64"
+ Name="Release_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -378,16 +391,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
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@@ -399,17 +402,6 @@
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/>
<Tool
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- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -430,9 +422,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
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+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
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+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
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</Configuration>
<Configuration
- Name="Debug|Win32"
+ Name="Release|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
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@@ -453,13 +463,6 @@
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@@ -469,16 +472,6 @@
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- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -499,9 +492,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
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+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
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+ AdditionalOptions="/MP"
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+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
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+ TargetMachine="1"
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</Configuration>
<Configuration
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+ Name="Release|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -520,13 +532,6 @@
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@@ -538,16 +543,6 @@
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- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -568,6 +563,24 @@
<Tool
Name="VCPostBuildEventTool"
/>
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+ <Tool
+ Name="VCLinkerTool"
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+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
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+ TargetMachine="17"
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</Configurations>
<References>
@@ -585,6 +598,14 @@
RelativePath=".\mexHelpFunctions.h"
>
</File>
+ <File
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+ >
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+ <File
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</Files>
<Globals>
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index 3ab1806..e944949 100644
--- a/matlab/mex/astra_mex_projector_vc11.vcxproj
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- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
- <Midl>
- <TargetEnvironment>X64</TargetEnvironment>
- </Midl>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>Astra64D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Release;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
- <TargetMachine>MachineX64</TargetMachine>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
<ItemGroup>
<ClCompile Include="astra_mex_projector_c.cpp" />
<ClCompile Include="mexHelpFunctions.cpp" />
- <ClCompile Include="mexCopyDataHelpFunctions.cpp">
- <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">true</ExcludedFromBuild>
- </ClCompile>
- <ClCompile Include="mexDataManagerHelpFunctions.cpp" />
+ <ClCompile Include="mexInitFunctions.cpp" />
</ItemGroup>
<ItemGroup>
<ClInclude Include="mexHelpFunctions.h" />
- <ClInclude Include="mexCopyDataHelpFunctions.h">
- <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">true</ExcludedFromBuild>
- </ClInclude>
- <ClInclude Include="mexDataManagerHelpFunctions.h" />
+ <ClInclude Include="mexInitFunctions.h" />
</ItemGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
<ImportGroup Label="ExtensionTargets">
diff --git a/matlab/mex/astra_mex_vc08.vcproj b/matlab/mex/astra_mex_vc09.vcproj
index 58c1e0a..e4d7d07 100644
--- a/matlab/mex/astra_mex_vc08.vcproj
+++ b/matlab/mex/astra_mex_vc09.vcproj
@@ -19,7 +19,7 @@
</ToolFiles>
<Configurations>
<Configuration
- Name="Release|Win32"
+ Name="Debug_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -40,12 +40,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -55,15 +49,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -84,9 +69,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release|x64"
+ Name="Debug_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -107,12 +111,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -122,15 +120,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -151,9 +140,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|Win32"
+ Name="Debug|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -174,13 +181,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -190,15 +190,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -219,9 +210,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Release_CUDA|x64"
+ Name="Debug|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -242,13 +252,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="2"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="2"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -258,15 +261,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -287,9 +281,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="0"
+ RuntimeLibrary="3"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|Win32"
+ Name="Release_CUDA|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -310,14 +322,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -327,16 +331,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -357,9 +351,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug_CUDA|x64"
+ Name="Release_CUDA|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -378,16 +391,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="&quot;$(CUDA_INC_PATH)&quot;;$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- PreprocessorDefinitions="ASTRA_CUDA"
- RuntimeLibrary="3"
- BrowseInformation="1"
- DebugInformationFormat="4"
/>
<Tool
Name="VCManagedResourceCompilerTool"
@@ -399,17 +402,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib libut.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -430,9 +422,27 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA;__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
+ />
</Configuration>
<Configuration
- Name="Debug|Win32"
+ Name="Release|Win32"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -453,13 +463,6 @@
Name="VCMIDLTool"
/>
<Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="3"
- DebugInformationFormat="4"
- />
- <Tool
Name="VCManagedResourceCompilerTool"
/>
<Tool
@@ -469,16 +472,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
- AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
- ModuleDefinitionFile="mex.def"
- GenerateDebugInformation="true"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -499,9 +492,28 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ EnableEnhancedInstructionSet="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="1"
+ />
</Configuration>
<Configuration
- Name="Debug|x64"
+ Name="Release|x64"
OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
ConfigurationType="2"
@@ -520,13 +532,6 @@
/>
<Tool
Name="VCMIDLTool"
- TargetEnvironment="3"
- />
- <Tool
- Name="VCCLCompilerTool"
- Optimization="0"
- AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
- RuntimeLibrary="3"
/>
<Tool
Name="VCManagedResourceCompilerTool"
@@ -538,16 +543,6 @@
Name="VCPreLinkEventTool"
/>
<Tool
- Name="VCLinkerTool"
- AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib"
- OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
- AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
- ModuleDefinitionFile="mex.def"
- RandomizedBaseAddress="1"
- DataExecutionPrevention="0"
- TargetMachine="17"
- />
- <Tool
Name="VCALinkTool"
/>
<Tool
@@ -568,6 +563,24 @@
<Tool
Name="VCPostBuildEventTool"
/>
+ <Tool
+ Name="VCCLCompilerTool"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="__SSE2__"
+ Optimization="2"
+ RuntimeLibrary="2"
+ OpenMP="true"
+ AdditionalOptions="/MP"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ TargetMachine="17"
+ />
</Configuration>
</Configurations>
<References>
@@ -585,6 +598,14 @@
RelativePath=".\mexHelpFunctions.h"
>
</File>
+ <File
+ RelativePath=".\mexInitFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexInitFunctions.h"
+ >
+ </File>
</Files>
<Globals>
</Globals>
diff --git a/matlab/mex/astra_mex_vc11.vcxproj b/matlab/mex/astra_mex_vc11.vcxproj
index 2e6857c..f1324b4 100644
--- a/matlab/mex/astra_mex_vc11.vcxproj
+++ b/matlab/mex/astra_mex_vc11.vcxproj
@@ -40,19 +40,15 @@
<RootNamespace>astraMatlab</RootNamespace>
</PropertyGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.Default.props" />
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
- <ConfigurationType>DynamicLibrary</ConfigurationType>
- <PlatformToolset>v110</PlatformToolset>
- </PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
@@ -60,7 +56,7 @@
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="Configuration">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
@@ -68,6 +64,10 @@
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
+ <ConfigurationType>DynamicLibrary</ConfigurationType>
+ <PlatformToolset>v110</PlatformToolset>
+ </PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'" Label="Configuration">
<ConfigurationType>DynamicLibrary</ConfigurationType>
<PlatformToolset>v110</PlatformToolset>
@@ -75,213 +75,230 @@
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.props" />
<ImportGroup Label="ExtensionSettings">
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
- <ImportGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'" Label="PropertySheets">
+ <ImportGroup Label="PropertySheets" Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')" Label="LocalAppDataPlatform" />
</ImportGroup>
<PropertyGroup Label="UserMacros" />
<PropertyGroup>
<_ProjectFileVersion>11.0.60610.1</_ProjectFileVersion>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw64</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
<OutDir>$(SolutionDir)bin\$(Platform)\$(Configuration)\</OutDir>
<IntDir>$(OutDir)obj\$(ProjectName)\</IntDir>
+ <TargetName>$(ProjectName)_c</TargetName>
+ <TargetExt>.mexw32</TargetExt>
</PropertyGroup>
- <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
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<OpenMPSupport>true</OpenMPSupport>
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+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
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<Link>
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- <AdditionalLibraryDirectories>..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
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<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
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+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
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- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions)</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <Optimization>Disabled</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
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</ClCompile>
<Link>
- <AdditionalDependencies>AstraCuda64.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
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- <AdditionalLibraryDirectories>..\..\bin\x64\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra64D.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Debug;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|Win32'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|Win32'">
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- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions)</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
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- <AdditionalLibraryDirectories>..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>AstraCuda32.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
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- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug_CUDA|x64'">
- <Midl>
- <TargetEnvironment>X64</TargetEnvironment>
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+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">
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- <PreprocessorDefinitions>ASTRA_CUDA;%(PreprocessorDefinitions)</PreprocessorDefinitions>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <BrowseInformation>true</BrowseInformation>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>ASTRA_CUDA;__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
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- <AdditionalLibraryDirectories>..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>AstraCuda64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Release_CUDA;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
- <TargetMachine>MachineX64</TargetMachine>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
<ClCompile>
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- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
- <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
+ <EnableEnhancedInstructionSet>StreamingSIMDExtensions2</EnableEnhancedInstructionSet>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>Astra32D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw32</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra32.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\win32\;..\..\bin\win32\Release;$(MATLAB_ROOT)\extern\lib\win32\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
<GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
- <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|x64'">
- <Midl>
- <TargetEnvironment>X64</TargetEnvironment>
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+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|x64'">
<ClCompile>
- <Optimization>Disabled</Optimization>
- <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <RuntimeLibrary>MultiThreadedDebugDLL</RuntimeLibrary>
+ <RuntimeLibrary>MultiThreadedDLL</RuntimeLibrary>
+ <AdditionalIncludeDirectories>$(MATLAB_ROOT)\extern\include\;$(CUDA_PATH)\include;..\..\lib\include;..\..\include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
<OpenMPSupport>true</OpenMPSupport>
+ <Optimization>MaxSpeed</Optimization>
+ <PreprocessorDefinitions>__SSE2__;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
</ClCompile>
<Link>
- <AdditionalDependencies>Astra64D.lib;libmex.lib;libmx.lib;%(AdditionalDependencies)</AdditionalDependencies>
<OutputFile>$(OutDir)$(ProjectName)_c.mexw64</OutputFile>
- <AdditionalLibraryDirectories>..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalDependencies>Astra64.lib;libmex.lib;libmx.lib;libut.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalLibraryDirectories>..\..\lib\x64\;..\..\bin\x64\Release;$(MATLAB_ROOT)\extern\lib\win64\microsoft;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<ModuleDefinitionFile>mex.def</ModuleDefinitionFile>
- <TargetMachine>MachineX64</TargetMachine>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
</Link>
</ItemDefinitionGroup>
<ItemGroup>
<ClCompile Include="astra_mex_c.cpp" />
<ClCompile Include="mexHelpFunctions.cpp" />
- <ClCompile Include="mexCopyDataHelpFunctions.cpp">
- <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">true</ExcludedFromBuild>
- </ClCompile>
- <ClCompile Include="mexDataManagerHelpFunctions.cpp" />
+ <ClCompile Include="mexInitFunctions.cpp" />
</ItemGroup>
<ItemGroup>
<ClInclude Include="mexHelpFunctions.h" />
- <ClInclude Include="mexCopyDataHelpFunctions.h">
- <ExcludedFromBuild Condition="'$(Configuration)|$(Platform)'=='Release_CUDA|x64'">true</ExcludedFromBuild>
- </ClInclude>
- <ClInclude Include="mexDataManagerHelpFunctions.h" />
+ <ClInclude Include="mexInitFunctions.h" />
</ItemGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
<ImportGroup Label="ExtensionTargets">
diff --git a/matlab/mex/mexCopyDataHelpFunctions.cpp b/matlab/mex/mexCopyDataHelpFunctions.cpp
index bbcad30..80fb834 100644
--- a/matlab/mex/mexCopyDataHelpFunctions.cpp
+++ b/matlab/mex/mexCopyDataHelpFunctions.cpp
@@ -1,13 +1,13 @@
/*
-----------------------------------------------------------------------
-Copyright 2013 iMinds-Vision Lab, University of Antwerp
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
-Contact: astra@ua.ac.be
-Website: http://astra.ua.ac.be
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+This file is part of the ASTRA Toolbox.
-This file is part of the
-All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@@ -40,7 +40,6 @@ $Id$
#if defined(__SSE2__)
# include <emmintrin.h>
-
# define STORE_32F_64F_CORE8(in, out, count, base) \
{\
const __m128 inV0 = *((const __m128 *) &in[count + 0 + base]);\
@@ -108,6 +107,17 @@ $Id$
out[count + 7 + base] = in[count + 7 + base];\
}
#endif
+#define STORE_8F_32F_CORE8(in, out, count, base) \
+ {\
+ out[count + 0 + base] = (float)in[count + 0 + base];\
+ out[count + 1 + base] = (float)in[count + 1 + base];\
+ out[count + 2 + base] = (float)in[count + 2 + base];\
+ out[count + 3 + base] = (float)in[count + 3 + base];\
+ out[count + 4 + base] = (float)in[count + 4 + base];\
+ out[count + 5 + base] = (float)in[count + 5 + base];\
+ out[count + 6 + base] = (float)in[count + 6 + base];\
+ out[count + 7 + base] = (float)in[count + 7 + base];\
+ }
const char * warnDataTypeNotSupported = "Data type not supported: nothing was copied";
@@ -118,6 +128,7 @@ _copyMexToCFloat32Array(const mxArray * const inArray, astra::float32 * const ou
const long long block = 32;
const long long totRoundedPixels = ROUND_DOWN(tot_size, block);
+ // Array of doubles
if (mxIsDouble(inArray)) {
const double * const pdMatlabData = mxGetPr(inArray);
@@ -133,6 +144,8 @@ _copyMexToCFloat32Array(const mxArray * const inArray, astra::float32 * const ou
out[count] = pdMatlabData[count];
}
}
+
+ // Array of floats
else if (mxIsSingle(inArray)) {
const float * const pfMatlabData = (const float *)mxGetData(inArray);
@@ -148,6 +161,23 @@ _copyMexToCFloat32Array(const mxArray * const inArray, astra::float32 * const ou
out[count] = pfMatlabData[count];
}
}
+
+ // Array of logicals
+ else if (mxIsLogical(inArray)) {
+ const mxLogical * const pfMatlabData = (const mxLogical *)mxGetLogicals(inArray);
+
+#pragma omp for nowait
+ for (long long count = 0; count < totRoundedPixels; count += block) {
+ STORE_8F_32F_CORE8(pfMatlabData, out, count, 0);
+ STORE_8F_32F_CORE8(pfMatlabData, out, count, 8);
+ STORE_8F_32F_CORE8(pfMatlabData, out, count, 16);
+ STORE_8F_32F_CORE8(pfMatlabData, out, count, 24);
+ }
+#pragma omp for nowait
+ for (long long count = totRoundedPixels; count < tot_size; count++) {
+ out[count] = pfMatlabData[count];
+ }
+ }
else {
#pragma omp single nowait
mexWarnMsgIdAndTxt("ASTRA_MEX:wrong_datatype", warnDataTypeNotSupported);
@@ -233,7 +263,7 @@ copyMexToCFloat32Array(const mxArray * const in,
#pragma omp parallel
{
// fill with scalar value
- if (mex_is_scalar(in)) {
+ if (mexIsScalar(in)) {
astra::float32 fValue = 0.f;
if (!mxIsEmpty(in)) {
fValue = (astra::float32)mxGetScalar(in);
diff --git a/matlab/mex/mexCopyDataHelpFunctions.h b/matlab/mex/mexCopyDataHelpFunctions.h
index d0cf3c6..0853879 100644
--- a/matlab/mex/mexCopyDataHelpFunctions.h
+++ b/matlab/mex/mexCopyDataHelpFunctions.h
@@ -1,13 +1,13 @@
/*
-----------------------------------------------------------------------
-Copyright 2013 iMinds-Vision Lab, University of Antwerp
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
-Contact: astra@ua.ac.be
-Website: http://astra.ua.ac.be
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+This file is part of the ASTRA Toolbox.
-This file is part of the
-All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
diff --git a/matlab/mex/mexDataManagerHelpFunctions.cpp b/matlab/mex/mexDataManagerHelpFunctions.cpp
index 2985a9d..d482428 100644
--- a/matlab/mex/mexDataManagerHelpFunctions.cpp
+++ b/matlab/mex/mexDataManagerHelpFunctions.cpp
@@ -1,13 +1,13 @@
/*
-----------------------------------------------------------------------
-Copyright 2013 iMinds-Vision Lab, University of Antwerp
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
-Contact: astra@ua.ac.be
-Website: http://astra.ua.ac.be
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+This file is part of the ASTRA Toolbox.
-This file is part of the
-All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@@ -105,7 +105,7 @@ checkID(const astra::int32 & id, astra::CFloat32Data3DMemory *& pDataObj)
bool
checkDataType(const mxArray * const in)
{
- return (mex_is_scalar(in) || mxIsDouble(in) || mxIsSingle(in));
+ return (mexIsScalar(in) || mxIsDouble(in) || mxIsSingle(in) || mxIsLogical(in));
}
//-----------------------------------------------------------------------------------------
@@ -213,7 +213,7 @@ allocateDataObject(const std::string & sDataType,
bool bUnshare = true;
if (unshare)
{
- if (!mex_is_scalar(unshare))
+ if (!mexIsScalar(unshare))
{
mexErrMsgTxt("Argument 5 (read-only) must be scalar");
return NULL;
@@ -225,7 +225,7 @@ allocateDataObject(const std::string & sDataType,
mwIndex iZ = 0;
if (zIndex)
{
- if (!mex_is_scalar(zIndex))
+ if (!mexIsScalar(zIndex))
{
mexErrMsgTxt("Argument 6 (Z) must be scalar");
return NULL;
@@ -237,25 +237,19 @@ allocateDataObject(const std::string & sDataType,
if (sDataType == "-vol")
{
// Read geometry
- astra::XMLDocument* xml = struct2XML("VolumeGeometry", geometry);
- if (!xml) {
- return NULL;
- }
- astra::Config cfg;
- cfg.self = xml->getRootNode();
-
+ astra::Config* cfg = structToConfig("VolumeGeometry3D", geometry);
astra::CVolumeGeometry3D* pGeometry = new astra::CVolumeGeometry3D();
- if (!pGeometry->initialize(cfg))
+ if (!pGeometry->initialize(*cfg))
{
mexErrMsgTxt("Geometry class not initialized. \n");
delete pGeometry;
- delete xml;
+ delete cfg;
return NULL;
}
- delete xml;
+ delete cfg;
// If data is specified, check dimensions
- if (data && !mex_is_scalar(data))
+ if (data && !mexIsScalar(data))
{
if (! (zIndex
? checkDataSize(data, pGeometry, iZ)
@@ -288,16 +282,10 @@ allocateDataObject(const std::string & sDataType,
else if (sDataType == "-sino" || sDataType == "-proj3d" || sDataType == "-sinocone")
{
// Read geometry
- astra::XMLDocument* xml = struct2XML("ProjectionGeometry", geometry);
- if (!xml) {
- return NULL;
- }
- astra::Config cfg;
- cfg.self = xml->getRootNode();
-
+ astra::Config* cfg = structToConfig("ProjectionGeometry3D", geometry);
// FIXME: Change how the base class is created. (This is duplicated
- // in Projector2D.cpp.)
- std::string type = cfg.self->getAttribute("type");
+ // in Projector3D.cpp.)
+ std::string type = cfg->self->getAttribute("type");
astra::CProjectionGeometry3D* pGeometry = 0;
if (type == "parallel3d") {
pGeometry = new astra::CParallelProjectionGeometry3D();
@@ -312,16 +300,16 @@ allocateDataObject(const std::string & sDataType,
return NULL;
}
- if (!pGeometry->initialize(cfg)) {
+ if (!pGeometry->initialize(*cfg)) {
mexErrMsgTxt("Geometry class not initialized. \n");
delete pGeometry;
- delete xml;
+ delete cfg;
return NULL;
}
- delete xml;
+ delete cfg;
// If data is specified, check dimensions
- if (data && !mex_is_scalar(data))
+ if (data && !mexIsScalar(data))
{
if (! (zIndex
? checkDataSize(data, pGeometry, iZ)
diff --git a/matlab/mex/mexDataManagerHelpFunctions.h b/matlab/mex/mexDataManagerHelpFunctions.h
index 36b74d8..0614e05 100644
--- a/matlab/mex/mexDataManagerHelpFunctions.h
+++ b/matlab/mex/mexDataManagerHelpFunctions.h
@@ -1,13 +1,13 @@
/*
-----------------------------------------------------------------------
-Copyright 2013 iMinds-Vision Lab, University of Antwerp
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
-Contact: astra@ua.ac.be
-Website: http://astra.ua.ac.be
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+This file is part of the ASTRA Toolbox.
-This file is part of the
-All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
diff --git a/matlab/mex/mexHelpFunctions.cpp b/matlab/mex/mexHelpFunctions.cpp
index e919dd9..c0ac711 100644
--- a/matlab/mex/mexHelpFunctions.cpp
+++ b/matlab/mex/mexHelpFunctions.cpp
@@ -32,9 +32,11 @@ $Id$
*/
#include "mexHelpFunctions.h"
-#include "astra/SparseMatrixProjectionGeometry2D.h"
-#include "astra/FanFlatVecProjectionGeometry2D.h"
-#include "astra/AstraObjectManager.h"
+#include <algorithm>
+#include <boost/lexical_cast.hpp>
+#include <boost/algorithm/string.hpp>
+#include <boost/algorithm/string/split.hpp>
+#include <boost/algorithm/string/classification.hpp>
using namespace std;
using namespace astra;
@@ -42,387 +44,148 @@ using namespace astra;
//-----------------------------------------------------------------------------------------
// get string from matlab
-std::string mex_util_get_string(const mxArray* pInput)
+string mexToString(const mxArray* pInput)
{
- if (!mxIsChar(pInput)) {
- return "";
+ // is string?
+ if (mxIsChar(pInput)) {
+ mwSize iLength = mxGetNumberOfElements(pInput) + 1;
+ char* buf = new char[iLength];
+ mxGetString(pInput, buf, iLength);
+ std::string res = std::string(buf);
+ delete[] buf;
+ return res;
}
- mwSize iLength = mxGetNumberOfElements(pInput) + 1;
- char* buf = new char[iLength];
- mxGetString(pInput, buf, iLength);
- std::string res = std::string(buf);
- delete[] buf;
- return res;
+
+ // is scalar?
+ if (mxIsNumeric(pInput) && mxGetM(pInput)*mxGetN(pInput) == 1) {
+ return boost::lexical_cast<string>(mxGetScalar(pInput));
+ }
+
+ return "";
}
//-----------------------------------------------------------------------------------------
-// is option
-bool isOption(std::list<std::string> lOptions, std::string sOption)
+// return true if the argument is a scalar
+bool mexIsScalar(const mxArray* pInput)
{
- return std::find(lOptions.begin(), lOptions.end(), sOption) != lOptions.end();
+ return (mxIsNumeric(pInput) && mxGetM(pInput)*mxGetN(pInput) == 1);
}
//-----------------------------------------------------------------------------------------
-// turn a matlab struct into a c++ map
-std::map<std::string, mxArray*> parseStruct(const mxArray* pInput)
+void get3DMatrixDims(const mxArray* x, mwSize *dims)
{
- std::map<std::string, mxArray*> res;
-
- // check type
- if (!mxIsStruct(pInput)) {
- mexErrMsgTxt("Input must be a struct.");
- return res;
+ const mwSize* mdims = mxGetDimensions(x);
+ mwSize dimCount = mxGetNumberOfDimensions(x);
+ if (dimCount == 1) {
+ dims[0] = mdims[0];
+ dims[1] = 1;
+ dims[2] = 1;
+ } else if (dimCount == 2) {
+ dims[0] = mdims[0];
+ dims[1] = mdims[1];
+ dims[2] = 1;
+ } else if (dimCount == 3) {
+ dims[0] = mdims[0];
+ dims[1] = mdims[1];
+ dims[2] = mdims[2];
+ } else {
+ dims[0] = 0;
+ dims[1] = 0;
+ dims[2] = 0;
}
+}
+
+
+
+
- // get field names
- int nfields = mxGetNumberOfFields(pInput);
- for (int i = 0; i < nfields; i++) {
- std::string sFieldName = std::string(mxGetFieldNameByNumber(pInput, i));
- res[sFieldName] = mxGetFieldByNumber(pInput,0,i);
- }
- return res;
-}
//-----------------------------------------------------------------------------------------
-// turn a c++ map into a matlab struct
-mxArray* buildStruct(std::map<std::string, mxArray*> mInput)
+// turn an std vector<float32> object to an mxArray
+mxArray* vectorToMxArray(std::vector<astra::float32> mInput)
{
- mwSize dims[2] = {1, 1};
- mxArray* res = mxCreateStructArray(2,dims,0,0);
-
- for (std::map<std::string, mxArray*>::iterator it = mInput.begin(); it != mInput.end(); it++) {
- mxAddField(res, (*it).first.c_str());
- mxSetField(res, 0, (*it).first.c_str(), (*it).second);
+ mxArray* res = mxCreateDoubleMatrix(1, mInput.size(), mxREAL);
+ double* pdData = mxGetPr(res);
+ for (unsigned int i = 0; i < mInput.size(); i++) {
+ pdData[i] = mInput[i];
}
return res;
}
//-----------------------------------------------------------------------------------------
-// parse projection geometry data
-astra::CProjectionGeometry2D* parseProjectionGeometryStruct(const mxArray* prhs)
+// turn a vector<vector<float32>> object to an mxArray
+mxArray* vector2DToMxArray(std::vector<std::vector<astra::float32> > mInput)
{
- // parse struct
- std::map<string, mxArray*> mStruct = parseStruct(prhs);
-
- // create projection geometry object
- string type = mex_util_get_string(mStruct["type"]);
- if (type == "parallel") {
-
- // detector_width
- float32 fDetWidth = 1.0f;
- mxArray* tmp = mStruct["detector_width"];
- if (tmp != NULL) {
- fDetWidth = (float32)(mxGetScalar(tmp));
- }
-
- // detector_count
- int iDetCount = 100;
- tmp = mStruct["detector_count"];
- if (tmp != NULL) {
- iDetCount = (int)(mxGetScalar(tmp));
- }
-
- // angles
- float32* pfAngles;
- int iAngleCount;
- tmp = mStruct["projection_angles"];
- if (tmp != NULL) {
- double* angleValues = mxGetPr(tmp);
- iAngleCount = mxGetN(tmp) * mxGetM(tmp);
- pfAngles = new float32[iAngleCount];
- for (int i = 0; i < iAngleCount; i++) {
- pfAngles[i] = angleValues[i];
- }
- } else {
- mexErrMsgTxt("'angles' not specified, error.");
- return NULL;
- }
-
- // create projection geometry
- return new astra::CParallelProjectionGeometry2D(iAngleCount, // number of projections
- iDetCount, // number of detectors
- fDetWidth, // width of the detectors
- pfAngles); // angles array
- }
-
- else if (type == "fanflat") {
-
- // detector_width
- float32 fDetWidth = 1.0f;
- mxArray* tmp = mStruct["detector_width"];
- if (tmp != NULL) {
- fDetWidth = (float32)(mxGetScalar(tmp));
- }
-
- // detector_count
- int iDetCount = 100;
- tmp = mStruct["detector_count"];
- if (tmp != NULL) {
- iDetCount = (int)(mxGetScalar(tmp));
- }
-
- // angles
- float32* pfAngles;
- int iAngleCount;
- tmp = mStruct["projection_angles"];
- if (tmp != NULL) {
- double* angleValues = mxGetPr(tmp);
- iAngleCount = mxGetN(tmp) * mxGetM(tmp);
- pfAngles = new float32[iAngleCount];
- for (int i = 0; i < iAngleCount; i++) {
- pfAngles[i] = angleValues[i];
- }
- } else {
- mexErrMsgTxt("'angles' not specified, error.");
- return NULL;
- }
-
- // origin_source_dist
- int iDistOriginSource = 100;
- tmp = mStruct["origin_source_dist"];
- if (tmp != NULL) {
- iDistOriginSource = (int)(mxGetScalar(tmp));
- }
+ unsigned int sizex = mInput.size();
+ if (sizex == 0) return mxCreateString("empty");
+ unsigned int sizey = mInput[0].size();
- // origin_det_dist
- int iDistOriginDet = 100;
- tmp = mStruct["origin_det_dist"];
- if (tmp != NULL) {
- iDistOriginDet = (int)(mxGetScalar(tmp));
+ mxArray* res = mxCreateDoubleMatrix(sizex, sizey, mxREAL);
+ double* pdData = mxGetPr(res);
+ for (unsigned int i = 0; i < sizex; i++) {
+ for (unsigned int j = 0; j < sizey && j < mInput[i].size(); j++) {
+ pdData[j*sizex+i] = mInput[i][j];
}
-
- // create projection geometry
- return new astra::CFanFlatProjectionGeometry2D(iAngleCount, // number of projections
- iDetCount, // number of detectors
- fDetWidth, // width of the detectors
- pfAngles, // angles array
- iDistOriginSource, // distance origin source
- iDistOriginDet); // distance origin detector
- }
-
- else {
- mexPrintf("Only parallel and fanflat projection geometry implemented.");
- return NULL;
}
+ return res;
}
//-----------------------------------------------------------------------------------------
-// create projection geometry data
-mxArray* createProjectionGeometryStruct(astra::CProjectionGeometry2D* _pProjGeom)
+// turn a boost::any object to an mxArray
+mxArray* anyToMxArray(boost::any _any)
{
- // temporary map to store the data for the MATLAB struct
- std::map<std::string, mxArray*> mGeometryInfo;
-
- // detectorCount
- mGeometryInfo["DetectorCount"] = mxCreateDoubleScalar(_pProjGeom->getDetectorCount());
-
- if (!_pProjGeom->isOfType("fanflat_vec")) {
- // detectorWidth
- mGeometryInfo["DetectorWidth"] = mxCreateDoubleScalar(_pProjGeom->getDetectorWidth());
-
- // pfProjectionAngles
- mxArray* pAngles = mxCreateDoubleMatrix(1, _pProjGeom->getProjectionAngleCount(), mxREAL);
- double* out = mxGetPr(pAngles);
- for (int i = 0; i < _pProjGeom->getProjectionAngleCount(); i++) {
- out[i] = _pProjGeom->getProjectionAngle(i);
- }
- mGeometryInfo["ProjectionAngles"] = pAngles;
- }
- else {
- astra::CFanFlatVecProjectionGeometry2D* pVecGeom = dynamic_cast<astra::CFanFlatVecProjectionGeometry2D*>(_pProjGeom);
- mxArray* pVectors = mxCreateDoubleMatrix(1, pVecGeom->getProjectionAngleCount()*6, mxREAL);
- double* out = mxGetPr(pVectors);
- int iDetCount = pVecGeom->getDetectorCount();
- for (int i = 0; i < pVecGeom->getProjectionAngleCount(); i++) {
- const SFanProjection* p = &pVecGeom->getProjectionVectors()[i];
- out[6*i + 0] = p->fSrcX;
- out[6*i + 1] = p->fSrcY;
- out[6*i + 2] = p->fDetSX + 0.5f*iDetCount*p->fDetUX;
- out[6*i + 3] = p->fDetSY + 0.5f*iDetCount*p->fDetUY;
- out[6*i + 4] = p->fDetUX;
- out[6*i + 5] = p->fDetUY;
- }
- mGeometryInfo["Vectors"] = pVectors;
+ if (_any.type() == typeid(std::string)) {
+ std::string str = boost::any_cast<std::string>(_any);
+ return mxCreateString(str.c_str());
}
-
- // parallel specific options
- if (_pProjGeom->isOfType("parallel")) {
- // type
- mGeometryInfo["type"] = mxCreateString("parallel");
+ if (_any.type() == typeid(int)) {
+ return mxCreateDoubleScalar(boost::any_cast<int>(_any));
}
- // fanflat specific options
- else if (_pProjGeom->isOfType("fanflat")) {
- astra::CFanFlatProjectionGeometry2D* pFanFlatGeom = dynamic_cast<astra::CFanFlatProjectionGeometry2D*>(_pProjGeom);
- // detectorCount
- mGeometryInfo["DistanceOriginSource"] = mxCreateDoubleScalar(pFanFlatGeom->getOriginSourceDistance());
- // detectorWidth
- mGeometryInfo["DistanceOriginDetector"] = mxCreateDoubleScalar(pFanFlatGeom->getOriginDetectorDistance());
- // type
- mGeometryInfo["type"] = mxCreateString("fanflat");
+ if (_any.type() == typeid(float32)) {
+ return mxCreateDoubleScalar(boost::any_cast<float32>(_any));
}
- else if (_pProjGeom->isOfType("sparse_matrix")) {
- astra::CSparseMatrixProjectionGeometry2D* pSparseMatrixGeom = dynamic_cast<astra::CSparseMatrixProjectionGeometry2D*>(_pProjGeom);
- mGeometryInfo["type"] = mxCreateString("sparse_matrix");
- mGeometryInfo["MatrixID"] = mxCreateDoubleScalar(CMatrixManager::getSingleton().getIndex(pSparseMatrixGeom->getMatrix()));
+ if (_any.type() == typeid(std::vector<astra::float32>)) {
+ return vectorToMxArray(boost::any_cast<std::vector<float32> >(_any));
}
- else if(_pProjGeom->isOfType("fanflat_vec")) {
- mGeometryInfo["type"] = mxCreateString("fanflat_vec");
+ if (_any.type() == typeid(std::vector<std::vector<astra::float32> >)) {
+ return vector2DToMxArray(boost::any_cast<std::vector<std::vector<float32> > >(_any));
}
-
- // build and return the MATLAB struct
- return buildStruct(mGeometryInfo);
+ return NULL;
}
-//-----------------------------------------------------------------------------------------
-// parse reconstruction geometry data
-astra::CVolumeGeometry2D* parseVolumeGeometryStruct(const mxArray* prhs)
-{
- // parse struct
- std::map<string, mxArray*> mStruct = parseStruct(prhs);
-
- std::map<string, mxArray*> mOptions = parseStruct(mStruct["option"]);
-
- // GridColCount
- int iWindowColCount = 128;
- mxArray* tmp = mStruct["GridColCount"];
- if (tmp != NULL) {
- iWindowColCount = (int)(mxGetScalar(tmp));
- }
-
- // GridRowCount
- int iWindowRowCount = 128;
- tmp = mStruct["GridRowCount"];
- if (tmp != NULL) {
- iWindowRowCount = (int)(mxGetScalar(tmp));
- }
- // WindowMinX
- float32 fWindowMinX = - iWindowColCount / 2;
- tmp = mOptions["WindowMinX"];
- if (tmp != NULL) {
- fWindowMinX = (float32)(mxGetScalar(tmp));
- }
-
- // WindowMaxX
- float32 fWindowMaxX = iWindowColCount / 2;
- tmp = mOptions["WindowMaxX"];
- if (tmp != NULL) {
- fWindowMaxX = (float32)(mxGetScalar(tmp));
- }
-
- // WindowMinY
- float32 fWindowMinY = - iWindowRowCount / 2;
- tmp = mOptions["WindowMinY"];
- if (tmp != NULL) {
- fWindowMinY = (float32)(mxGetScalar(tmp));
- }
-
- // WindowMaxX
- float32 fWindowMaxY = iWindowRowCount / 2;
- tmp = mOptions["WindowMaxY"];
- if (tmp != NULL) {
- fWindowMaxY = (float32)(mxGetScalar(tmp));
- }
-
- // create and return reconstruction geometry
- return new astra::CVolumeGeometry2D(iWindowColCount, iWindowRowCount,
- fWindowMinX, fWindowMinY,
- fWindowMaxX, fWindowMaxY);
-}
-//-----------------------------------------------------------------------------------------
-// create reconstruction geometry data
-mxArray* createVolumeGeometryStruct(astra::CVolumeGeometry2D* _pReconGeom)
-{
- // temporary map to store the data for the MATLAB struct
- std::map<std::string, mxArray*> mGeometryInfo;
- // fill up map
- mGeometryInfo["GridColCount"] = mxCreateDoubleScalar(_pReconGeom->getGridColCount());
- mGeometryInfo["GridRowCount"] = mxCreateDoubleScalar(_pReconGeom->getGridRowCount());
- std::map<std::string, mxArray*> mGeometryOptions;
- mGeometryOptions["WindowMinX"] = mxCreateDoubleScalar(_pReconGeom->getWindowMinX());
- mGeometryOptions["WindowMaxX"] = mxCreateDoubleScalar(_pReconGeom->getWindowMaxX());
- mGeometryOptions["WindowMinY"] = mxCreateDoubleScalar(_pReconGeom->getWindowMinY());
- mGeometryOptions["WindowMaxY"] = mxCreateDoubleScalar(_pReconGeom->getWindowMaxY());
- mGeometryInfo["option"] = buildStruct(mGeometryOptions);
- // build and return the MATLAB struct
- return buildStruct(mGeometryInfo);
-}
//-----------------------------------------------------------------------------------------
-string matlab2string(const mxArray* pField)
+// turn a MATLAB struct into a Config object
+Config* structToConfig(string rootname, const mxArray* pStruct)
{
- // is string?
- if (mxIsChar(pField)) {
- return mex_util_get_string(pField);
- }
-
- // is scalar?
- if (mxIsNumeric(pField) && mxGetM(pField)*mxGetN(pField) == 1) {
- return boost::lexical_cast<string>(mxGetScalar(pField));
+ if (!mxIsStruct(pStruct)) {
+ mexErrMsgTxt("Input must be a struct.");
+ return NULL;
}
- return "";
-}
-
-//-----------------------------------------------------------------------------------------
-// Options struct to xml node
-bool readOptions(XMLNode* node, const mxArray* pOptionStruct)
-{
- // loop all fields
- int nfields = mxGetNumberOfFields(pOptionStruct);
- for (int i = 0; i < nfields; i++) {
- std::string sFieldName = std::string(mxGetFieldNameByNumber(pOptionStruct, i));
- const mxArray* pField = mxGetFieldByNumber(pOptionStruct, 0, i);
-
- if (node->hasOption(sFieldName)) {
- mexErrMsgTxt("Duplicate option");
- return false;
- }
-
- // string or scalar
- if (mxIsChar(pField) || mex_is_scalar(pField)) {
- string sValue = matlab2string(pField);
- node->addOption(sFieldName, sValue);
- } else
- // numerical array
- if (mxIsNumeric(pField) && mxGetM(pField)*mxGetN(pField) > 1) {
- if (!mxIsDouble(pField)) {
- mexErrMsgTxt("Numeric input must be double.");
- return false;
- }
+ // create the document
+ Config* cfg = new Config();
+ cfg->initialize(rootname);
- XMLNode* listbase = node->addChildNode("Option");
- listbase->addAttribute("key", sFieldName);
- listbase->addAttribute("listsize", mxGetM(pField)*mxGetN(pField));
- double* pdValues = mxGetPr(pField);
- int index = 0;
- for (unsigned int row = 0; row < mxGetM(pField); row++) {
- for (unsigned int col = 0; col < mxGetN(pField); col++) {
- XMLNode* item = listbase->addChildNode("ListItem");
- item->addAttribute("index", index);
- item->addAttribute("value", pdValues[col*mxGetM(pField)+row]);
- index++;
- delete item;
- }
- }
- delete listbase;
- } else {
- mexErrMsgTxt("Unsupported option type");
- return false;
- }
+ // read the struct
+ bool ret = structToXMLNode(cfg->self, pStruct);
+ if (!ret) {
+ delete cfg;
+ mexErrMsgTxt("Error parsing struct.");
+ return NULL;
}
- return true;
+ return cfg;
}
//-----------------------------------------------------------------------------------------
-// struct to xml node
-bool readStruct(XMLNode* root, const mxArray* pStruct)
+bool structToXMLNode(XMLNode* node, const mxArray* pStruct)
{
// loop all fields
int nfields = mxGetNumberOfFields(pStruct);
@@ -434,27 +197,27 @@ bool readStruct(XMLNode* root, const mxArray* pStruct)
// string
if (mxIsChar(pField)) {
- string sValue = matlab2string(pField);
+ string sValue = mexToString(pField);
if (sFieldName == "type") {
- root->addAttribute("type", sValue);
+ node->addAttribute("type", sValue);
} else {
- delete root->addChildNode(sFieldName, sValue);
+ delete node->addChildNode(sFieldName, sValue);
}
}
// scalar
- if (mex_is_scalar(pField)) {
- string sValue = matlab2string(pField);
- delete root->addChildNode(sFieldName, sValue);
+ else if (mxIsNumeric(pField) && mxGetM(pField)*mxGetN(pField) == 1) {
+ string sValue = mexToString(pField);
+ delete node->addChildNode(sFieldName, sValue);
}
// numerical array
- if (mxIsNumeric(pField) && mxGetM(pField)*mxGetN(pField) > 1) {
+ else if (mxIsNumeric(pField) && mxGetM(pField)*mxGetN(pField) > 1) {
if (!mxIsDouble(pField)) {
mexErrMsgTxt("Numeric input must be double.");
return false;
}
- XMLNode* listbase = root->addChildNode(sFieldName);
+ XMLNode* listbase = node->addChildNode(sFieldName);
listbase->addAttribute("listsize", mxGetM(pField)*mxGetN(pField));
double* pdValues = mxGetPr(pField);
int index = 0;
@@ -470,16 +233,15 @@ bool readStruct(XMLNode* root, const mxArray* pStruct)
delete listbase;
}
-
// not castable to a single string
- if (mxIsStruct(pField)) {
+ else if (mxIsStruct(pField)) {
if (sFieldName == "options" || sFieldName == "option" || sFieldName == "Options" || sFieldName == "Option") {
- bool ret = readOptions(root, pField);
+ bool ret = optionsToXMLNode(node, pField);
if (!ret)
return false;
} else {
- XMLNode* newNode = root->addChildNode(sFieldName);
- bool ret = readStruct(newNode, pField);
+ XMLNode* newNode = node->addChildNode(sFieldName);
+ bool ret = structToXMLNode(newNode, pField);
delete newNode;
if (!ret)
return false;
@@ -490,109 +252,101 @@ bool readStruct(XMLNode* root, const mxArray* pStruct)
return true;
}
+//-----------------------------------------------------------------------------------------
+// Options struct to xml node
+bool optionsToXMLNode(XMLNode* node, const mxArray* pOptionStruct)
+{
+ // loop all fields
+ int nfields = mxGetNumberOfFields(pOptionStruct);
+ for (int i = 0; i < nfields; i++) {
+ std::string sFieldName = std::string(mxGetFieldNameByNumber(pOptionStruct, i));
+ const mxArray* pField = mxGetFieldByNumber(pOptionStruct, 0, i);
+ if (node->hasOption(sFieldName)) {
+ mexErrMsgTxt("Duplicate option");
+ return false;
+ }
+
+ // string or scalar
+ if (mxIsChar(pField) || mexIsScalar(pField)) {
+ string sValue = mexToString(pField);
+ node->addOption(sFieldName, sValue);
+ }
+ // numerical array
+ else if (mxIsNumeric(pField) && mxGetM(pField)*mxGetN(pField) > 1) {
+ if (!mxIsDouble(pField)) {
+ mexErrMsgTxt("Numeric input must be double.");
+ return false;
+ }
+
+ XMLNode* listbase = node->addChildNode("Option");
+ listbase->addAttribute("key", sFieldName);
+ listbase->addAttribute("listsize", mxGetM(pField)*mxGetN(pField));
+ double* pdValues = mxGetPr(pField);
+ int index = 0;
+ for (unsigned int row = 0; row < mxGetM(pField); row++) {
+ for (unsigned int col = 0; col < mxGetN(pField); col++) {
+ XMLNode* item = listbase->addChildNode("ListItem");
+ item->addAttribute("index", index);
+ item->addAttribute("value", pdValues[col*mxGetM(pField)+row]);
+ index++;
+ delete item;
+ }
+ }
+ delete listbase;
+ } else {
+ mexErrMsgTxt("Unsupported option type");
+ return false;
+ }
+ }
+ return true;
+}
//-----------------------------------------------------------------------------------------
-// turn a MATLAB struct into an XML Document
-XMLDocument* struct2XML(string rootname, const mxArray* pStruct)
+// turn a matlab struct into a c++ map
+std::map<std::string, mxArray*> parseStruct(const mxArray* pInput)
{
- if (!mxIsStruct(pStruct)) {
+ std::map<std::string, mxArray*> res;
+
+ // check type
+ if (!mxIsStruct(pInput)) {
mexErrMsgTxt("Input must be a struct.");
- return NULL;
+ return res;
}
- // create the document
- XMLDocument* doc = XMLDocument::createDocument(rootname);
- XMLNode* rootnode = doc->getRootNode();
+ // get field names
+ int nfields = mxGetNumberOfFields(pInput);
+ for (int i = 0; i < nfields; i++) {
+ std::string sFieldName = std::string(mxGetFieldNameByNumber(pInput, i));
+ res[sFieldName] = mxGetFieldByNumber(pInput,0,i);
+ }
+ return res;
+}
+
+
- // read the struct
- bool ret = readStruct(rootnode, pStruct);
- //doc->getRootNode()->print();
- delete rootnode;
- if (!ret) {
- delete doc;
- doc = 0;
- }
- return doc;
-}
-//-----------------------------------------------------------------------------------------
-// turn an std vector<float32> object to an mxArray
-mxArray* vectorToMxArray(std::vector<astra::float32> mInput)
-{
- mxArray* res = mxCreateDoubleMatrix(1, mInput.size(), mxREAL);
- double* pdData = mxGetPr(res);
- for (unsigned int i = 0; i < mInput.size(); i++) {
- pdData[i] = mInput[i];
- }
- return res;
-}
-//-----------------------------------------------------------------------------------------
-// turn a vector<vector<float32>> object to an mxArray
-mxArray* vector2DToMxArray(std::vector<std::vector<astra::float32> > mInput)
-{
- unsigned int sizex = mInput.size();
- if (sizex == 0) return mxCreateString("empty");
- unsigned int sizey = mInput[0].size();
- mxArray* res = mxCreateDoubleMatrix(sizex, sizey, mxREAL);
- double* pdData = mxGetPr(res);
- for (unsigned int i = 0; i < sizex; i++) {
- for (unsigned int j = 0; j < sizey && j < mInput[i].size(); j++) {
- pdData[j*sizex+i] = mInput[i][j];
- }
- }
- return res;
-}
-//-----------------------------------------------------------------------------------------
-// turn a boost::any object to an mxArray
-mxArray* anyToMxArray(boost::any _any)
-{
- if (_any.type() == typeid(std::string)) {
- std::string str = boost::any_cast<std::string>(_any);
- return mxCreateString(str.c_str());
- }
- if (_any.type() == typeid(int)) {
- return mxCreateDoubleScalar(boost::any_cast<int>(_any));
- }
- if (_any.type() == typeid(float32)) {
- return mxCreateDoubleScalar(boost::any_cast<float32>(_any));
- }
- if (_any.type() == typeid(std::vector<astra::float32>)) {
- return vectorToMxArray(boost::any_cast<std::vector<float32> >(_any));
- }
- if (_any.type() == typeid(std::vector<std::vector<astra::float32> >)) {
- return vector2DToMxArray(boost::any_cast<std::vector<std::vector<float32> > >(_any));
- }
- return NULL;
-}
-//-----------------------------------------------------------------------------------------
-// return true ig the argument is a scalar
-bool mex_is_scalar(const mxArray* pInput)
-{
- return (mxIsNumeric(pInput) && mxGetM(pInput)*mxGetN(pInput) == 1);
-}
//-----------------------------------------------------------------------------------------
-mxArray* XML2struct(astra::XMLDocument* xml)
+// turn a Config object into a MATLAB struct
+mxArray* configToStruct(astra::Config* cfg)
{
- XMLNode* node = xml->getRootNode();
- mxArray* str = XMLNode2struct(xml->getRootNode());
- delete node;
- return str;
+ return XMLNodeToStruct(cfg->self);
}
//-----------------------------------------------------------------------------------------
-mxArray* XMLNode2struct(astra::XMLNode* node)
+mxArray* XMLNodeToStruct(astra::XMLNode* node)
{
- std::map<std::string, mxArray*> mList;
+ std::map<std::string, mxArray*> mList;
+ std::map<std::string, mxArray*> mOptions;
// type_attribute
if (node->hasAttribute("type")) {
@@ -602,41 +356,103 @@ mxArray* XMLNode2struct(astra::XMLNode* node)
list<XMLNode*> nodes = node->getNodes();
for (list<XMLNode*>::iterator it = nodes.begin(); it != nodes.end(); it++) {
XMLNode* subnode = (*it);
- // list
- if (subnode->hasAttribute("listsize")) {
- cout << "lkmdsqldqsjkl" << endl;
- cout << " " << node->getContentNumericalArray().size() << endl;
- mList[subnode->getName()] = vectorToMxArray(node->getContentNumericalArray());
+
+ // option
+ if (subnode->getName() == "Option") {
+ mOptions[subnode->getAttribute("key")] = stringToMxArray(subnode->getAttribute("value"));
}
- // string
+
+ // regular content
else {
- mList[subnode->getName()] = mxCreateString(subnode->getContent().c_str());
+ mList[subnode->getName()] = stringToMxArray(subnode->getContent());
}
delete subnode;
}
+ if (mOptions.size() > 0) mList["options"] = buildStruct(mOptions);
return buildStruct(mList);
}
-void get3DMatrixDims(const mxArray* x, mwSize *dims)
+//-----------------------------------------------------------------------------------------
+mxArray* stringToMxArray(std::string input)
{
- const mwSize* mdims = mxGetDimensions(x);
- mwSize dimCount = mxGetNumberOfDimensions(x);
- if (dimCount == 1) {
- dims[0] = mdims[0];
- dims[1] = 1;
- dims[2] = 1;
- } else if (dimCount == 2) {
- dims[0] = mdims[0];
- dims[1] = mdims[1];
- dims[2] = 1;
- } else if (dimCount == 3) {
- dims[0] = mdims[0];
- dims[1] = mdims[1];
- dims[2] = mdims[2];
- } else {
- dims[0] = 0;
- dims[1] = 0;
- dims[2] = 0;
+ // matrix
+ if (input.find(';') != std::string::npos) {
+
+ // split rows
+ std::vector<std::string> row_strings;
+ std::vector<std::string> col_strings;
+ boost::split(row_strings, input, boost::is_any_of(";"));
+ boost::split(col_strings, row_strings[0], boost::is_any_of(","));
+
+ // get dimensions
+ int rows = row_strings.size();
+ int cols = col_strings.size();
+
+ // init matrix
+ mxArray* pMatrix = mxCreateDoubleMatrix(rows, cols, mxREAL);
+ double* out = mxGetPr(pMatrix);
+
+ // loop elements
+ for (unsigned int row = 0; row < rows; row++) {
+ boost::split(col_strings, row_strings[row], boost::is_any_of(","));
+ // check size
+ for (unsigned int col = 0; col < col_strings.size(); col++) {
+ out[col*rows + row] = boost::lexical_cast<float32>(col_strings[col]);
+ }
+ }
+ return pMatrix;
}
-}
+
+ // vector
+ if (input.find(',') != std::string::npos) {
+
+ // split
+ std::vector<std::string> items;
+ boost::split(items, input, boost::is_any_of(","));
+
+ // init matrix
+ mxArray* pVector = mxCreateDoubleMatrix(1, items.size(), mxREAL);
+ double* out = mxGetPr(pVector);
+
+ // loop elements
+ for (unsigned int i = 0; i < items.size(); i++) {
+ out[i] = boost::lexical_cast<float32>(items[i]);
+ }
+ return pVector;
+ }
+
+ // number
+ char* end;
+ double content = ::strtod(input.c_str(), &end);
+ bool isnumber = !*end;
+ if (isnumber) {
+ return mxCreateDoubleScalar(content);
+ }
+
+ // string
+ return mxCreateString(input.c_str());
+}
+//-----------------------------------------------------------------------------------------
+// turn a c++ map into a matlab struct
+mxArray* buildStruct(std::map<std::string, mxArray*> mInput)
+{
+ mwSize dims[2] = {1, 1};
+ mxArray* res = mxCreateStructArray(2,dims,0,0);
+
+ for (std::map<std::string, mxArray*>::iterator it = mInput.begin(); it != mInput.end(); it++) {
+ mxAddField(res, (*it).first.c_str());
+ mxSetField(res, 0, (*it).first.c_str(), (*it).second);
+ }
+ return res;
+}
+
+
+
+
+
+
+
+
+
+
diff --git a/matlab/mex/mexHelpFunctions.h b/matlab/mex/mexHelpFunctions.h
index 425b4ef..f9ffcf2 100644
--- a/matlab/mex/mexHelpFunctions.h
+++ b/matlab/mex/mexHelpFunctions.h
@@ -1,13 +1,13 @@
/*
-----------------------------------------------------------------------
-Copyright 2012 iMinds-Vision Lab, University of Antwerp
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
-Contact: astra@ua.ac.be
-Website: http://astra.ua.ac.be
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+This file is part of the ASTRA Toolbox.
-This file is part of the
-All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@@ -43,34 +43,31 @@ $Id$
#include "astra/Globals.h"
#include "astra/Utilities.h"
-#include "astra/ParallelProjectionGeometry2D.h"
-#include "astra/FanFlatProjectionGeometry2D.h"
-#include "astra/VolumeGeometry2D.h"
-
+#include "astra/Config.h"
#include "astra/XMLDocument.h"
#include "astra/XMLNode.h"
-std::string mex_util_get_string(const mxArray* pInput);
-bool isOption(std::list<std::string> lOptions, std::string sOption);
-
-bool mex_is_scalar(const mxArray* pInput);
+// utility functions
+string mexToString(const mxArray* pInput);
+bool mexIsScalar(const mxArray* pInput);
+void get3DMatrixDims(const mxArray* x, mwSize *dims);
-std::map<std::string, mxArray*> parseStruct(const mxArray* pInput);
-mxArray* buildStruct(std::map<std::string, mxArray*> mInput);
+// convert boost::any into a MALTAB object
mxArray* vectorToMxArray(std::vector<astra::float32> mInput);
-
mxArray* anyToMxArray(boost::any _any);
-astra::CProjectionGeometry2D* parseProjectionGeometryStruct(const mxArray*);
-mxArray* createProjectionGeometryStruct(astra::CProjectionGeometry2D*);
-astra::CVolumeGeometry2D* parseVolumeGeometryStruct(const mxArray*);
-mxArray* createVolumeGeometryStruct(astra::CVolumeGeometry2D* _pReconGeom);
+// turn a MATLAB struct into a Config object
+astra::Config* structToConfig(string rootname, const mxArray* pStruct);
+bool structToXMLNode(astra::XMLNode* node, const mxArray* pStruct);
+bool optionsToXMLNode(astra::XMLNode* node, const mxArray* pOptionStruct);
+std::map<std::string, mxArray*> parseStruct(const mxArray* pInput);
-astra::XMLDocument* struct2XML(string rootname, const mxArray* pStruct);
+// turn a Config object into a MATLAB struct
+mxArray* configToStruct(astra::Config* cfg);
+mxArray* XMLNodeToStruct(astra::XMLNode* xml);
+mxArray* stringToMxArray(std::string input);
+mxArray* buildStruct(std::map<std::string, mxArray*> mInput);
-mxArray* XML2struct(astra::XMLDocument* xml);
-mxArray* XMLNode2struct(astra::XMLNode* xml);
-void get3DMatrixDims(const mxArray* x, mwSize *dims);
#endif
diff --git a/matlab/mex/mexInitFunctions.cpp b/matlab/mex/mexInitFunctions.cpp
new file mode 100644
index 0000000..d8a50d7
--- /dev/null
+++ b/matlab/mex/mexInitFunctions.cpp
@@ -0,0 +1,24 @@
+#include <mex.h>
+#include "astra/Logging.h"
+
+bool mexIsInitialized=false;
+
+/**
+ * Callback to print log message to Matlab window.
+ *
+ */
+void logCallBack(const char *msg, size_t len){
+ mexPrintf(msg);
+}
+
+/**
+ * Initialize mex functions.
+ *
+ */
+void initASTRAMex(){
+ if(mexIsInitialized) return;
+ if(!astra::CLogger::setCallbackScreen(&logCallBack)){
+ mexErrMsgTxt("Error initializing mex functions.");
+ }
+ mexIsInitialized=true;
+}
diff --git a/matlab/mex/mexInitFunctions.h b/matlab/mex/mexInitFunctions.h
new file mode 100644
index 0000000..f16e9c9
--- /dev/null
+++ b/matlab/mex/mexInitFunctions.h
@@ -0,0 +1,6 @@
+#ifndef _INC_ASTRA_MEX_INITFUNCTIONS
+#define _INC_ASTRA_MEX_INITFUNCTIONS
+
+void initASTRAMex();
+
+#endif \ No newline at end of file
diff --git a/matlab/tools/astra_mex_log.m b/matlab/tools/astra_mex_log.m
new file mode 100644
index 0000000..28cfa18
--- /dev/null
+++ b/matlab/tools/astra_mex_log.m
@@ -0,0 +1,33 @@
+function [varargout] = astra_mex_log(varargin)
+%------------------------------------------------------------------------
+% Reference page in Help browser
+% <a href="matlab:docsearch('astra_mex_log' )">astra_mex_log</a>.
+%------------------------------------------------------------------------
+%------------------------------------------------------------------------
+% This file is part of the ASTRA Toolbox
+%
+% Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+% 2014-2015, CWI, Amsterdam
+% License: Open Source under GPLv3
+% Contact: astra@uantwerpen.be
+% Website: http://sf.net/projects/astra-toolbox
+%------------------------------------------------------------------------
+% $Id$
+if size(varargin,2)==2 && (strcmp(varargin{1},'debug') || strcmp(varargin{1},'info') || strcmp(varargin{1},'warn') || strcmp(varargin{1},'error'))
+ d = dbstack(1);
+ if size(d,1)==0
+ astra_mex_log_c(varargin{1},'Unknown',0,varargin{2})
+ else
+ astra_mex_log_c(varargin{1},d(1).file,d(1).line,varargin{2})
+ end
+else
+ if nargout == 0
+ astra_mex_log_c(varargin{:});
+ if exist('ans','var')
+ varargout{1} = ans;
+ end
+ else
+ varargout = cell(1,nargout);
+ [varargout{:}] = astra_mex_log_c(varargin{:});
+ end
+end \ No newline at end of file
diff --git a/python/COPYING b/python/COPYING
new file mode 100644
index 0000000..94a9ed0
--- /dev/null
+++ b/python/COPYING
@@ -0,0 +1,674 @@
+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+ Preamble
+
+ The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+ The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works. By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users. We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors. You can apply it to
+your programs, too.
+
+ When we speak of free software, we are referring to freedom, not
+price. Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
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+
+ To protect your rights, we need to prevent others from denying you
+these rights or asking you to surrender the rights. Therefore, you have
+certain responsibilities if you distribute copies of the software, or if
+you modify it: responsibilities to respect the freedom of others.
+
+ For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must pass on to the recipients the same
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+
+ Developers that use the GNU GPL protect your rights with two steps:
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diff --git a/python/LICENSE b/python/LICENSE
new file mode 120000
index 0000000..d24842f
--- /dev/null
+++ b/python/LICENSE
@@ -0,0 +1 @@
+COPYING \ No newline at end of file
diff --git a/python/astra/ASTRAProjector.py b/python/astra/ASTRAProjector.py
new file mode 100644
index 0000000..f282618
--- /dev/null
+++ b/python/astra/ASTRAProjector.py
@@ -0,0 +1,135 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import math
+from . import creators as ac
+from . import data2d
+
+
+class ASTRAProjector2DTranspose():
+ """Implements the ``proj.T`` functionality.
+
+ Do not use directly, since it can be accessed as member ``.T`` of
+ an :class:`ASTRAProjector2D` object.
+
+ """
+ def __init__(self, parentProj):
+ self.parentProj = parentProj
+
+ def __mul__(self, data):
+ return self.parentProj.backProject(data)
+
+
+class ASTRAProjector2D(object):
+ """Helps with various common ASTRA Toolbox 2D operations.
+
+ This class can perform several often used toolbox operations, such as:
+
+ * Forward projecting
+ * Back projecting
+ * Reconstructing
+
+ Note that this class has a some computational overhead, because it
+ copies a lot of data. If you use many repeated operations, directly
+ using the PyAstraToolbox methods directly is faster.
+
+ You can use this class as an abstracted weight matrix :math:`W`: multiplying an instance
+ ``proj`` of this class by an image results in a forward projection of the image, and multiplying
+ ``proj.T`` by a sinogram results in a backprojection of the sinogram::
+
+ proj = ASTRAProjector2D(...)
+ fp = proj*image
+ bp = proj.T*sinogram
+
+ :param proj_geom: The projection geometry.
+ :type proj_geom: :class:`dict`
+ :param vol_geom: The volume geometry.
+ :type vol_geom: :class:`dict`
+ :param proj_type: Projector type, such as ``'line'``, ``'linear'``, ...
+ :type proj_type: :class:`string`
+ """
+
+ def __init__(self, proj_geom, vol_geom, proj_type):
+ self.vol_geom = vol_geom
+ self.recSize = vol_geom['GridColCount']
+ self.angles = proj_geom['ProjectionAngles']
+ self.nDet = proj_geom['DetectorCount']
+ nexpow = int(pow(2, math.ceil(math.log(2 * self.nDet, 2))))
+ self.filterSize = nexpow / 2 + 1
+ self.nProj = self.angles.shape[0]
+ self.proj_geom = proj_geom
+ self.proj_id = ac.create_projector(proj_type, proj_geom, vol_geom)
+ self.T = ASTRAProjector2DTranspose(self)
+
+ def backProject(self, data):
+ """Backproject a sinogram.
+
+ :param data: The sinogram data or ID.
+ :type data: :class:`numpy.ndarray` or :class:`int`
+ :returns: :class:`numpy.ndarray` -- The backprojection.
+
+ """
+ vol_id, vol = ac.create_backprojection(
+ data, self.proj_id, returnData=True)
+ data2d.delete(vol_id)
+ return vol
+
+ def forwardProject(self, data):
+ """Forward project an image.
+
+ :param data: The image data or ID.
+ :type data: :class:`numpy.ndarray` or :class:`int`
+ :returns: :class:`numpy.ndarray` -- The forward projection.
+
+ """
+ sin_id, sino = ac.create_sino(data, self.proj_id, returnData=True)
+ data2d.delete(sin_id)
+ return sino
+
+ def reconstruct(self, data, method, **kwargs):
+ """Reconstruct an image from a sinogram.
+
+ :param data: The sinogram data or ID.
+ :type data: :class:`numpy.ndarray` or :class:`int`
+ :param method: Name of the reconstruction algorithm.
+ :type method: :class:`string`
+ :param kwargs: Additional named parameters to pass to :func:`astra.creators.create_reconstruction`.
+ :returns: :class:`numpy.ndarray` -- The reconstruction.
+
+ Example of a SIRT reconstruction using CUDA::
+
+ proj = ASTRAProjector2D(...)
+ rec = proj.reconstruct(sinogram,'SIRT_CUDA',iterations=1000)
+
+ """
+ kwargs['returnData'] = True
+ rec_id, rec = ac.create_reconstruction(
+ method, self.proj_id, data, **kwargs)
+ data2d.delete(rec_id)
+ return rec
+
+ def __mul__(self, data):
+ return self.forwardProject(data)
diff --git a/python/astra/PyAlgorithmFactory.pxd b/python/astra/PyAlgorithmFactory.pxd
new file mode 100644
index 0000000..256d7b2
--- /dev/null
+++ b/python/astra/PyAlgorithmFactory.pxd
@@ -0,0 +1,36 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from libcpp.string cimport string
+from libcpp cimport bool
+from .PyIncludes cimport *
+
+cdef extern from "astra/AstraObjectFactory.h" namespace "astra":
+ cdef cppclass CAlgorithmFactory:
+ CAlgorithmFactory()
+ CAlgorithm *create(string)
+
+cdef extern from "astra/AstraObjectFactory.h" namespace "astra::CAlgorithmFactory":
+ cdef CAlgorithmFactory* getSingletonPtr()
diff --git a/python/astra/PyAlgorithmManager.pxd b/python/astra/PyAlgorithmManager.pxd
new file mode 100644
index 0000000..a99a807
--- /dev/null
+++ b/python/astra/PyAlgorithmManager.pxd
@@ -0,0 +1,40 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from libcpp.string cimport string
+from libcpp cimport bool
+from .PyIncludes cimport *
+
+cdef extern from "astra/AstraObjectManager.h" namespace "astra":
+ cdef cppclass CAlgorithmManager:
+ int store(CAlgorithm *)
+ CAlgorithm * get(int)
+ void remove(int)
+ void clear()
+ string info()
+
+cdef extern from "astra/AstraObjectManager.h" namespace "astra::CAlgorithmManager":
+ cdef CAlgorithmManager* getSingletonPtr()
+
diff --git a/python/astra/PyData2DManager.pxd b/python/astra/PyData2DManager.pxd
new file mode 100644
index 0000000..db8ec84
--- /dev/null
+++ b/python/astra/PyData2DManager.pxd
@@ -0,0 +1,39 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from libcpp.string cimport string
+
+from .PyIncludes cimport *
+
+cdef extern from "astra/AstraObjectManager.h" namespace "astra":
+ cdef cppclass CData2DManager:
+ string info()
+ void clear()
+ void remove(int i)
+ int store(CFloat32Data2D *)
+ CFloat32Data2D * get(int i)
+
+cdef extern from "astra/AstraObjectManager.h" namespace "astra::CData2DManager":
+ cdef CData2DManager* getSingletonPtr()
diff --git a/python/astra/PyData3DManager.pxd b/python/astra/PyData3DManager.pxd
new file mode 100644
index 0000000..9264a82
--- /dev/null
+++ b/python/astra/PyData3DManager.pxd
@@ -0,0 +1,39 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from libcpp.string cimport string
+
+from .PyIncludes cimport *
+
+cdef extern from "astra/AstraObjectManager.h" namespace "astra":
+ cdef cppclass CData3DManager:
+ string info()
+ void clear()
+ void remove(int i)
+ int store(CFloat32Data3D *)
+ CFloat32Data3D * get(int i)
+
+cdef extern from "astra/AstraObjectManager.h" namespace "astra::CData3DManager":
+ cdef CData3DManager* getSingletonPtr()
diff --git a/python/astra/PyIncludes.pxd b/python/astra/PyIncludes.pxd
new file mode 100644
index 0000000..7df02c5
--- /dev/null
+++ b/python/astra/PyIncludes.pxd
@@ -0,0 +1,244 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from libcpp cimport bool
+from libcpp.string cimport string
+from .PyXMLDocument cimport XMLNode
+
+include "config.pxi"
+
+cdef extern from "astra/Globals.h" namespace "astra":
+ ctypedef float float32
+ ctypedef double float64
+ ctypedef unsigned short int uint16
+ ctypedef signed short int sint16
+ ctypedef unsigned char uchar8
+ ctypedef signed char schar8
+ ctypedef int int32
+ ctypedef short int int16
+
+cdef extern from "astra/Config.h" namespace "astra":
+ cdef cppclass Config:
+ Config()
+ void initialize(string rootname)
+ XMLNode *self
+
+cdef extern from "astra/VolumeGeometry2D.h" namespace "astra":
+ cdef cppclass CVolumeGeometry2D:
+ bool initialize(Config)
+ int getGridColCount()
+ int getGridRowCount()
+ int getGridTotCount()
+ float32 getWindowLengthX()
+ float32 getWindowLengthY()
+ float32 getWindowArea()
+ float32 getPixelLengthX()
+ float32 getPixelLengthY()
+ float32 getPixelArea()
+ float32 getWindowMinX()
+ float32 getWindowMinY()
+ float32 getWindowMaxX()
+ float32 getWindowMaxY()
+ Config* getConfiguration()
+
+
+cdef extern from "astra/Float32VolumeData2D.h" namespace "astra":
+ cdef cppclass CFloat32VolumeData2D:
+ CFloat32VolumeData2D(CVolumeGeometry2D*)
+ CVolumeGeometry2D * getGeometry()
+ int getWidth()
+ int getHeight()
+ void changeGeometry(CVolumeGeometry2D*)
+ Config* getConfiguration()
+
+
+
+cdef extern from "astra/ProjectionGeometry2D.h" namespace "astra":
+ cdef cppclass CProjectionGeometry2D:
+ CProjectionGeometry2D()
+ bool initialize(Config)
+ int getDetectorCount()
+ int getProjectionAngleCount()
+ bool isOfType(string)
+ float32 getProjectionAngle(int)
+ float32 getDetectorWidth()
+ Config* getConfiguration()
+
+cdef extern from "astra/Float32Data2D.h" namespace "astra::CFloat32Data2D":
+ cdef enum TWOEDataType "astra::CFloat32Data2D::EDataType":
+ TWOPROJECTION "astra::CFloat32Data2D::PROJECTION"
+ TWOVOLUME "astra::CFloat32Data2D::VOLUME"
+
+cdef extern from "astra/Float32Data3D.h" namespace "astra::CFloat32Data3D":
+ cdef enum THREEEDataType "astra::CFloat32Data3D::EDataType":
+ THREEPROJECTION "astra::CFloat32Data3D::PROJECTION"
+ THREEVOLUME "astra::CFloat32Data3D::VOLUME"
+
+
+cdef extern from "astra/Float32Data2D.h" namespace "astra":
+ cdef cppclass CFloat32Data2D:
+ bool isInitialized()
+ int getSize()
+ float32 *getData()
+ float32 **getData2D()
+ int getWidth()
+ int getHeight()
+ TWOEDataType getType()
+
+
+
+
+cdef extern from "astra/SparseMatrixProjectionGeometry2D.h" namespace "astra":
+ cdef cppclass CSparseMatrixProjectionGeometry2D:
+ CSparseMatrixProjectionGeometry2D()
+
+cdef extern from "astra/FanFlatProjectionGeometry2D.h" namespace "astra":
+ cdef cppclass CFanFlatProjectionGeometry2D:
+ CFanFlatProjectionGeometry2D()
+
+cdef extern from "astra/FanFlatVecProjectionGeometry2D.h" namespace "astra":
+ cdef cppclass CFanFlatVecProjectionGeometry2D:
+ CFanFlatVecProjectionGeometry2D()
+
+cdef extern from "astra/ParallelProjectionGeometry2D.h" namespace "astra":
+ cdef cppclass CParallelProjectionGeometry2D:
+ CParallelProjectionGeometry2D()
+
+
+cdef extern from "astra/Float32ProjectionData2D.h" namespace "astra":
+ cdef cppclass CFloat32ProjectionData2D:
+ CFloat32ProjectionData2D(CProjectionGeometry2D*)
+ CProjectionGeometry2D * getGeometry()
+ void changeGeometry(CProjectionGeometry2D*)
+ int getDetectorCount()
+ int getAngleCount()
+
+cdef extern from "astra/Algorithm.h" namespace "astra":
+ cdef cppclass CAlgorithm:
+ bool initialize(Config)
+ void run(int)
+ bool isInitialized()
+
+cdef extern from "astra/ReconstructionAlgorithm2D.h" namespace "astra":
+ cdef cppclass CReconstructionAlgorithm2D:
+ bool getResidualNorm(float32&)
+
+cdef extern from "astra/Projector2D.h" namespace "astra":
+ cdef cppclass CProjector2D:
+ bool isInitialized()
+ CProjectionGeometry2D* getProjectionGeometry()
+ CVolumeGeometry2D* getVolumeGeometry()
+ CSparseMatrix* getMatrix()
+
+cdef extern from "astra/Projector3D.h" namespace "astra":
+ cdef cppclass CProjector3D:
+ bool isInitialized()
+ CProjectionGeometry3D* getProjectionGeometry()
+ CVolumeGeometry3D* getVolumeGeometry()
+
+IF HAVE_CUDA==True:
+ cdef extern from "astra/CudaProjector3D.h" namespace "astra":
+ cdef cppclass CCudaProjector3D
+
+ cdef extern from "astra/CudaProjector2D.h" namespace "astra":
+ cdef cppclass CCudaProjector2D
+
+
+cdef extern from "astra/SparseMatrix.h" namespace "astra":
+ cdef cppclass CSparseMatrix:
+ CSparseMatrix(unsigned int,unsigned int,unsigned long)
+ unsigned int m_iWidth
+ unsigned int m_iHeight
+ unsigned long m_lSize
+ bool isInitialized()
+ float32* m_pfValues
+ unsigned int* m_piColIndices
+ unsigned long* m_plRowStarts
+
+cdef extern from "astra/Float32Data3DMemory.h" namespace "astra":
+ cdef cppclass CFloat32Data3DMemory:
+ CFloat32Data3DMemory()
+ bool isInitialized()
+ int getSize()
+ int getWidth()
+ int getHeight()
+ int getDepth()
+ void updateStatistics()
+ float32 *getData()
+ float32 ***getData3D()
+ THREEEDataType getType()
+
+
+cdef extern from "astra/VolumeGeometry3D.h" namespace "astra":
+ cdef cppclass CVolumeGeometry3D:
+ CVolumeGeometry3D()
+ bool initialize(Config)
+ Config * getConfiguration()
+
+cdef extern from "astra/ProjectionGeometry3D.h" namespace "astra":
+ cdef cppclass CProjectionGeometry3D:
+ CProjectionGeometry3D()
+ bool initialize(Config)
+ Config * getConfiguration()
+
+
+cdef extern from "astra/Float32VolumeData3DMemory.h" namespace "astra":
+ cdef cppclass CFloat32VolumeData3DMemory:
+ CFloat32VolumeData3DMemory(CVolumeGeometry3D*)
+ CVolumeGeometry3D* getGeometry()
+
+
+cdef extern from "astra/ParallelProjectionGeometry3D.h" namespace "astra":
+ cdef cppclass CParallelProjectionGeometry3D:
+ CParallelProjectionGeometry3D()
+
+cdef extern from "astra/ParallelVecProjectionGeometry3D.h" namespace "astra":
+ cdef cppclass CParallelVecProjectionGeometry3D:
+ CParallelVecProjectionGeometry3D()
+
+cdef extern from "astra/ConeProjectionGeometry3D.h" namespace "astra":
+ cdef cppclass CConeProjectionGeometry3D:
+ CConeProjectionGeometry3D()
+ bool initialize(Config)
+
+cdef extern from "astra/ConeVecProjectionGeometry3D.h" namespace "astra":
+ cdef cppclass CConeVecProjectionGeometry3D:
+ CConeVecProjectionGeometry3D()
+
+cdef extern from "astra/Float32ProjectionData3DMemory.h" namespace "astra":
+ cdef cppclass CFloat32ProjectionData3DMemory:
+ CFloat32ProjectionData3DMemory(CProjectionGeometry3D*)
+ CFloat32ProjectionData3DMemory(CConeProjectionGeometry3D*)
+ CProjectionGeometry3D* getGeometry()
+
+cdef extern from "astra/Float32Data3D.h" namespace "astra":
+ cdef cppclass CFloat32Data3D:
+ CFloat32Data3D()
+ bool isInitialized()
+ int getSize()
+ int getWidth()
+ int getHeight()
+ int getDepth()
+ void updateStatistics()
diff --git a/python/astra/PyMatrixManager.pxd b/python/astra/PyMatrixManager.pxd
new file mode 100644
index 0000000..b2b84c4
--- /dev/null
+++ b/python/astra/PyMatrixManager.pxd
@@ -0,0 +1,39 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from libcpp.string cimport string
+
+from .PyIncludes cimport *
+
+cdef extern from "astra/AstraObjectManager.h" namespace "astra":
+ cdef cppclass CMatrixManager:
+ string info()
+ void clear()
+ void remove(int i)
+ int store(CSparseMatrix *)
+ CSparseMatrix * get(int i)
+
+cdef extern from "astra/AstraObjectManager.h" namespace "astra::CMatrixManager":
+ cdef CMatrixManager* getSingletonPtr()
diff --git a/python/astra/PyProjector2DFactory.pxd b/python/astra/PyProjector2DFactory.pxd
new file mode 100644
index 0000000..3314544
--- /dev/null
+++ b/python/astra/PyProjector2DFactory.pxd
@@ -0,0 +1,35 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from libcpp.string cimport string
+from libcpp cimport bool
+from .PyIncludes cimport *
+
+cdef extern from "astra/AstraObjectFactory.h" namespace "astra":
+ cdef cppclass CProjector2DFactory:
+ CProjector2D *create(Config)
+
+cdef extern from "astra/AstraObjectFactory.h" namespace "astra::CProjector2DFactory":
+ cdef CProjector2DFactory* getSingletonPtr()
diff --git a/python/astra/PyProjector2DManager.pxd b/python/astra/PyProjector2DManager.pxd
new file mode 100644
index 0000000..92176ba
--- /dev/null
+++ b/python/astra/PyProjector2DManager.pxd
@@ -0,0 +1,39 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from libcpp.string cimport string
+
+from .PyIncludes cimport *
+
+cdef extern from "astra/AstraObjectManager.h" namespace "astra":
+ cdef cppclass CProjector2DManager:
+ string info()
+ void clear()
+ void remove(int i)
+ int store(CProjector2D *)
+ CProjector2D * get(int i)
+
+cdef extern from "astra/AstraObjectManager.h" namespace "astra::CProjector2DManager":
+ cdef CProjector2DManager* getSingletonPtr()
diff --git a/python/astra/PyProjector3DFactory.pxd b/python/astra/PyProjector3DFactory.pxd
new file mode 100644
index 0000000..bcbce94
--- /dev/null
+++ b/python/astra/PyProjector3DFactory.pxd
@@ -0,0 +1,35 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from libcpp.string cimport string
+from libcpp cimport bool
+from .PyIncludes cimport *
+
+cdef extern from "astra/AstraObjectFactory.h" namespace "astra":
+ cdef cppclass CProjector3DFactory:
+ CProjector3D *create(Config)
+
+cdef extern from "astra/AstraObjectFactory.h" namespace "astra::CProjector3DFactory":
+ cdef CProjector3DFactory* getSingletonPtr()
diff --git a/python/astra/PyProjector3DManager.pxd b/python/astra/PyProjector3DManager.pxd
new file mode 100644
index 0000000..b1eac6b
--- /dev/null
+++ b/python/astra/PyProjector3DManager.pxd
@@ -0,0 +1,39 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from libcpp.string cimport string
+
+from .PyIncludes cimport *
+
+cdef extern from "astra/AstraObjectManager.h" namespace "astra":
+ cdef cppclass CProjector3DManager:
+ string info()
+ void clear()
+ void remove(int i)
+ int store(CProjector3D *)
+ CProjector3D * get(int i)
+
+cdef extern from "astra/AstraObjectManager.h" namespace "astra::CProjector3DManager":
+ cdef CProjector3DManager* getSingletonPtr()
diff --git a/python/astra/PyXMLDocument.pxd b/python/astra/PyXMLDocument.pxd
new file mode 100644
index 0000000..69781f1
--- /dev/null
+++ b/python/astra/PyXMLDocument.pxd
@@ -0,0 +1,65 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+# distutils: language = c++
+# distutils: libraries = astra
+
+from libcpp.string cimport string
+from libcpp cimport bool
+from libcpp.list cimport list
+from libcpp.vector cimport vector
+
+cdef extern from "astra/Globals.h" namespace "astra":
+ ctypedef float float32
+ ctypedef double float64
+ ctypedef unsigned short int uint16
+ ctypedef signed short int sint16
+ ctypedef unsigned char uchar8
+ ctypedef signed char schar8
+ ctypedef int int32
+ ctypedef short int int16
+
+cdef extern from "astra/XMLNode.h" namespace "astra":
+ cdef cppclass XMLNode:
+ string getName()
+ XMLNode *addChildNode(string name)
+ XMLNode *addChildNode(string, string)
+ void addAttribute(string, string)
+ void addAttribute(string, float32)
+ void addOption(string, string)
+ bool hasOption(string)
+ string getAttribute(string)
+ list[XMLNode *] getNodes()
+ vector[float32] getContentNumericalArray()
+ string getContent()
+ bool hasAttribute(string)
+
+cdef extern from "astra/XMLDocument.h" namespace "astra":
+ cdef cppclass XMLDocument:
+ void saveToFile(string sFilename)
+ XMLNode *getRootNode()
+
+cdef extern from "astra/XMLDocument.h" namespace "astra::XMLDocument":
+ cdef XMLDocument *createDocument(string rootname)
diff --git a/python/astra/__init__.py b/python/astra/__init__.py
new file mode 100644
index 0000000..063dc16
--- /dev/null
+++ b/python/astra/__init__.py
@@ -0,0 +1,44 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from . import matlab as m
+from .creators import astra_dict,create_vol_geom, create_proj_geom, create_backprojection, create_sino, create_reconstruction, create_projector,create_sino3d_gpu, create_backprojection3d_gpu
+from .functions import data_op, add_noise_to_sino, clear, move_vol_geom
+from .extrautils import clipCircle
+from .ASTRAProjector import ASTRAProjector2D
+from . import data2d
+from . import astra
+from . import data3d
+from . import algorithm
+from . import projector
+from . import projector3d
+from . import matrix
+from . import log
+
+import os
+try:
+ astra.set_gpu_index(int(os.environ['ASTRA_GPU_INDEX']))
+except KeyError:
+ pass
diff --git a/python/astra/algorithm.py b/python/astra/algorithm.py
new file mode 100644
index 0000000..46cfccc
--- /dev/null
+++ b/python/astra/algorithm.py
@@ -0,0 +1,76 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+from . import algorithm_c as a
+
+def create(config):
+ """Create algorithm object.
+
+ :param config: Algorithm options.
+ :type config: :class:`dict`
+ :returns: :class:`int` -- the ID of the constructed object.
+
+ """
+ return a.create(config)
+
+def run(i, iterations=1):
+ """Run an algorithm.
+
+ :param i: ID of object.
+ :type i: :class:`int`
+ :param iterations: Number of iterations to run.
+ :type iterations: :class:`int`
+
+ """
+ return a.run(i,iterations)
+
+def get_res_norm(i):
+ """Get residual norm of algorithm.
+
+ :param i: ID of object.
+ :type i: :class:`int`
+ :returns: :class:`float` -- The residual norm.
+
+ """
+
+ return a.get_res_norm(i)
+
+def delete(ids):
+ """Delete a matrix object.
+
+ :param ids: ID or list of ID's to delete.
+ :type ids: :class:`int` or :class:`list`
+
+ """
+ return a.delete(ids)
+
+def clear():
+ """Clear all matrix objects."""
+ return a.clear()
+
+def info():
+ """Print info on matrix objects in memory."""
+ return a.info()
diff --git a/python/astra/algorithm_c.pyx b/python/astra/algorithm_c.pyx
new file mode 100644
index 0000000..966d3d7
--- /dev/null
+++ b/python/astra/algorithm_c.pyx
@@ -0,0 +1,104 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+# distutils: language = c++
+# distutils: libraries = astra
+
+import six
+from .PyIncludes cimport *
+
+cimport PyAlgorithmManager
+from .PyAlgorithmManager cimport CAlgorithmManager
+
+cimport PyAlgorithmFactory
+from .PyAlgorithmFactory cimport CAlgorithmFactory
+
+cimport PyXMLDocument
+from .PyXMLDocument cimport XMLDocument
+
+cimport utils
+from .utils import wrap_from_bytes
+
+cdef CAlgorithmManager * manAlg = <CAlgorithmManager * >PyAlgorithmManager.getSingletonPtr()
+
+cdef extern from *:
+ CReconstructionAlgorithm2D * dynamic_cast_recAlg "dynamic_cast<CReconstructionAlgorithm2D*>" (CAlgorithm * ) except NULL
+
+
+def create(config):
+ cdef Config * cfg = utils.dictToConfig(six.b('Algorithm'), config)
+ cdef CAlgorithm * alg
+ alg = PyAlgorithmFactory.getSingletonPtr().create(cfg.self.getAttribute(six.b('type')))
+ if alg == NULL:
+ del cfg
+ raise Exception("Unknown algorithm.")
+ if not alg.initialize(cfg[0]):
+ del cfg
+ del alg
+ raise Exception("Algorithm not initialized.")
+ del cfg
+ return manAlg.store(alg)
+
+cdef CAlgorithm * getAlg(i) except NULL:
+ cdef CAlgorithm * alg = manAlg.get(i)
+ if alg == NULL:
+ raise Exception("Unknown algorithm.")
+ if not alg.isInitialized():
+ raise Exception("Algorithm not initialized.")
+ return alg
+
+
+def run(i, iterations=0):
+ cdef CAlgorithm * alg = getAlg(i)
+ alg.run(iterations)
+
+
+def get_res_norm(i):
+ cdef CReconstructionAlgorithm2D * pAlg2D
+ cdef CAlgorithm * alg = getAlg(i)
+ cdef float32 res = 0.0
+ pAlg2D = dynamic_cast_recAlg(alg)
+ if pAlg2D == NULL:
+ raise Exception("Operation not supported.")
+ if not pAlg2D.getResidualNorm(res):
+ raise Exception("Operation not supported.")
+ return res
+
+
+def delete(ids):
+ try:
+ for i in ids:
+ manAlg.remove(i)
+ except TypeError:
+ manAlg.remove(ids)
+
+
+def clear():
+ manAlg.clear()
+
+
+def info():
+ six.print_(wrap_from_bytes(manAlg.info()))
diff --git a/python/astra/astra.py b/python/astra/astra.py
new file mode 100644
index 0000000..26b1ff0
--- /dev/null
+++ b/python/astra/astra.py
@@ -0,0 +1,58 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+from . import astra_c as a
+
+def credits():
+ """Print credits of the ASTRA Toolbox."""
+ return a.credits()
+
+
+def use_cuda():
+ """Test if CUDA is enabled.
+
+ :returns: :class:`bool` -- ``True`` if CUDA is enabled.
+ """
+ return a.use_cuda()
+
+
+def version(printToScreen=False):
+ """Check version of the ASTRA Toolbox.
+
+ :param printToScreen: If ``True``, print version string. If ``False``, return version integer.
+ :type printToScreen: :class:`bool`
+ :returns: :class:`string` or :class:`int` -- The version string or integer.
+
+ """
+ return a.version(printToScreen)
+
+def set_gpu_index(idx):
+ """Set default GPU index to use.
+
+ :param idx: GPU index
+ :type idx: :class:`int`
+ """
+ a.set_gpu_index(idx)
diff --git a/python/astra/astra_c.pyx b/python/astra/astra_c.pyx
new file mode 100644
index 0000000..342a214
--- /dev/null
+++ b/python/astra/astra_c.pyx
@@ -0,0 +1,79 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+# distutils: language = c++
+# distutils: libraries = astra
+
+include "config.pxi"
+import six
+from .utils import wrap_from_bytes
+
+from libcpp.string cimport string
+from libcpp cimport bool
+cdef extern from "astra/Globals.h" namespace "astra":
+ int getVersion()
+ string getVersionString()
+ bool cudaEnabled()
+
+IF HAVE_CUDA==True:
+ cdef extern from "../cuda/2d/darthelper.h" namespace "astraCUDA":
+ bool setGPUIndex(int)
+ELSE:
+ def setGPUIndex():
+ pass
+
+def credits():
+ six.print_("""
+All Scale Tomographic Reconstruction Antwerp Toolbox (ASTRA-Toolbox)
+was developed at the University of Antwerp by
+ * Prof. dr. Joost Batenburg
+ * Andrei Dabravolski
+ * Gert Merckx
+ * Willem Jan Palenstijn
+ * Tom Roelandts
+ * Prof. dr. Jan Sijbers
+ * dr. Wim van Aarle
+ * Sander van der Maar
+ * dr. Gert Van Gompel
+
+Python interface written by
+ * Daniel M. Pelt (CWI, Amsterdam)""")
+
+
+def use_cuda():
+ return cudaEnabled()
+
+
+def version(printToScreen=False):
+ if printToScreen:
+ six.print_(wrap_from_bytes(getVersionString()))
+ else:
+ return getVersion()
+
+def set_gpu_index(idx):
+ if use_cuda()==True:
+ ret = setGPUIndex(idx)
+ if not ret:
+ six.print_("Failed to set GPU " + str(idx))
diff --git a/python/astra/creators.py b/python/astra/creators.py
new file mode 100644
index 0000000..68bc8a2
--- /dev/null
+++ b/python/astra/creators.py
@@ -0,0 +1,543 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import six
+import numpy as np
+import math
+from . import data2d
+from . import data3d
+from . import projector
+from . import projector3d
+from . import algorithm
+
+def astra_dict(intype):
+ """Creates a dict to use with the ASTRA Toolbox.
+
+ :param intype: Type of the ASTRA object.
+ :type intype: :class:`string`
+ :returns: :class:`dict` -- An ASTRA dict of type ``intype``.
+
+ """
+ if intype == 'SIRT_CUDA2':
+ intype = 'SIRT_CUDA'
+ six.print_('SIRT_CUDA2 has been deprecated. Use SIRT_CUDA instead.')
+ elif intype == 'FP_CUDA2':
+ intype = 'FP_CUDA'
+ six.print_('FP_CUDA2 has been deprecated. Use FP_CUDA instead.')
+ return {'type': intype}
+
+def create_vol_geom(*varargin):
+ """Create a volume geometry structure.
+
+This method can be called in a number of ways:
+
+``create_vol_geom(N)``:
+ :returns: A 2D volume geometry of size :math:`N \\times N`.
+
+``create_vol_geom((M, N))``:
+ :returns: A 2D volume geometry of size :math:`M \\times N`.
+
+``create_vol_geom(M, N)``:
+ :returns: A 2D volume geometry of size :math:`M \\times N`.
+
+``create_vol_geom(M, N, minx, maxx, miny, maxy)``:
+ :returns: A 2D volume geometry of size :math:`M \\times N`, windowed as :math:`minx \\leq x \\leq maxx` and :math:`miny \\leq y \\leq maxy`.
+
+``create_vol_geom((M, N, Z))``:
+ :returns: A 3D volume geometry of size :math:`M \\times N \\times Z`.
+
+``create_vol_geom(M, N, Z)``:
+ :returns: A 3D volume geometry of size :math:`M \\times N \\times Z`.
+
+"""
+ vol_geom = {'option': {}}
+ # astra_create_vol_geom(row_count)
+ if len(varargin) == 1 and isinstance(varargin[0], int) == 1:
+ vol_geom['GridRowCount'] = varargin[0]
+ vol_geom['GridColCount'] = varargin[0]
+ vol_geom['option']['WindowMinX'] = -varargin[0] / 2.
+ vol_geom['option']['WindowMaxX'] = varargin[0] / 2.
+ vol_geom['option']['WindowMinY'] = -varargin[0] / 2.
+ vol_geom['option']['WindowMaxY'] = varargin[0] / 2.
+ # astra_create_vol_geom([row_count col_count])
+ elif len(varargin) == 1 and len(varargin[0]) == 2:
+ vol_geom['GridRowCount'] = varargin[0][0]
+ vol_geom['GridColCount'] = varargin[0][1]
+ vol_geom['option']['WindowMinX'] = -varargin[0][1] / 2.
+ vol_geom['option']['WindowMaxX'] = varargin[0][1] / 2.
+ vol_geom['option']['WindowMinY'] = -varargin[0][0] / 2.
+ vol_geom['option']['WindowMaxY'] = varargin[0][0] / 2.
+ # astra_create_vol_geom([row_count col_count slice_count])
+ elif len(varargin) == 1 and len(varargin[0]) == 3:
+ vol_geom['GridRowCount'] = varargin[0][0]
+ vol_geom['GridColCount'] = varargin[0][1]
+ vol_geom['GridSliceCount'] = varargin[0][2]
+ vol_geom['option']['WindowMinX'] = -varargin[0][1] / 2.
+ vol_geom['option']['WindowMaxX'] = varargin[0][1] / 2.
+ vol_geom['option']['WindowMinY'] = -varargin[0][0] / 2.
+ vol_geom['option']['WindowMaxY'] = varargin[0][0] / 2.
+ vol_geom['option']['WindowMinZ'] = -varargin[0][2] / 2.
+ vol_geom['option']['WindowMaxZ'] = varargin[0][2] / 2.
+ # astra_create_vol_geom(row_count, col_count)
+ elif len(varargin) == 2:
+ vol_geom['GridRowCount'] = varargin[0]
+ vol_geom['GridColCount'] = varargin[1]
+ vol_geom['option']['WindowMinX'] = -varargin[1] / 2.
+ vol_geom['option']['WindowMaxX'] = varargin[1] / 2.
+ vol_geom['option']['WindowMinY'] = -varargin[0] / 2.
+ vol_geom['option']['WindowMaxY'] = varargin[0] / 2.
+ # astra_create_vol_geom(row_count, col_count, min_x, max_x, min_y, max_y)
+ elif len(varargin) == 6:
+ vol_geom['GridRowCount'] = varargin[0]
+ vol_geom['GridColCount'] = varargin[1]
+ vol_geom['option']['WindowMinX'] = varargin[2]
+ vol_geom['option']['WindowMaxX'] = varargin[3]
+ vol_geom['option']['WindowMinY'] = varargin[4]
+ vol_geom['option']['WindowMaxY'] = varargin[5]
+ # astra_create_vol_geom(row_count, col_count, slice_count)
+ elif len(varargin) == 3:
+ vol_geom['GridRowCount'] = varargin[0]
+ vol_geom['GridColCount'] = varargin[1]
+ vol_geom['GridSliceCount'] = varargin[2]
+ return vol_geom
+
+
+def create_proj_geom(intype, *args):
+ """Create a projection geometry.
+
+This method can be called in a number of ways:
+
+``create_proj_geom('parallel', detector_spacing, det_count, angles)``:
+
+:param detector_spacing: Distance between two adjacent detector pixels.
+:type detector_spacing: :class:`float`
+:param det_count: Number of detector pixels.
+:type det_count: :class:`int`
+:param angles: Array of angles in radians.
+:type angles: :class:`numpy.ndarray`
+:returns: A parallel projection geometry.
+
+
+``create_proj_geom('fanflat', det_width, det_count, angles, source_origin, source_det)``:
+
+:param det_width: Size of a detector pixel.
+:type det_width: :class:`float`
+:param det_count: Number of detector pixels.
+:type det_count: :class:`int`
+:param angles: Array of angles in radians.
+:type angles: :class:`numpy.ndarray`
+:param source_origin: Position of the source.
+:param source_det: Position of the detector
+:returns: A fan-beam projection geometry.
+
+``create_proj_geom('fanflat_vec', det_count, V)``:
+
+:param det_count: Number of detector pixels.
+:type det_count: :class:`int`
+:param V: Vector array.
+:type V: :class:`numpy.ndarray`
+:returns: A fan-beam projection geometry.
+
+``create_proj_geom('parallel3d', detector_spacing_x, detector_spacing_y, det_row_count, det_col_count, angles)``:
+
+:param detector_spacing_*: Distance between two adjacent detector pixels.
+:type detector_spacing_*: :class:`float`
+:param det_row_count: Number of detector pixel rows.
+:type det_row_count: :class:`int`
+:param det_col_count: Number of detector pixel columns.
+:type det_col_count: :class:`int`
+:param angles: Array of angles in radians.
+:type angles: :class:`numpy.ndarray`
+:returns: A parallel projection geometry.
+
+``create_proj_geom('cone', detector_spacing_x, detector_spacing_y, det_row_count, det_col_count, angles, source_origin, source_det)``:
+
+:param detector_spacing_*: Distance between two adjacent detector pixels.
+:type detector_spacing_*: :class:`float`
+:param det_row_count: Number of detector pixel rows.
+:type det_row_count: :class:`int`
+:param det_col_count: Number of detector pixel columns.
+:type det_col_count: :class:`int`
+:param angles: Array of angles in radians.
+:type angles: :class:`numpy.ndarray`
+:param source_origin: Distance between point source and origin.
+:type source_origin: :class:`float`
+:param source_det: Distance between the detector and origin.
+:type source_det: :class:`float`
+:returns: A cone-beam projection geometry.
+
+``create_proj_geom('cone_vec', det_row_count, det_col_count, V)``:
+
+:param det_row_count: Number of detector pixel rows.
+:type det_row_count: :class:`int`
+:param det_col_count: Number of detector pixel columns.
+:type det_col_count: :class:`int`
+:param V: Vector array.
+:type V: :class:`numpy.ndarray`
+:returns: A cone-beam projection geometry.
+
+``create_proj_geom('parallel3d_vec', det_row_count, det_col_count, V)``:
+
+:param det_row_count: Number of detector pixel rows.
+:type det_row_count: :class:`int`
+:param det_col_count: Number of detector pixel columns.
+:type det_col_count: :class:`int`
+:param V: Vector array.
+:type V: :class:`numpy.ndarray`
+:returns: A parallel projection geometry.
+
+``create_proj_geom('sparse_matrix', det_width, det_count, angles, matrix_id)``:
+
+:param det_width: Size of a detector pixel.
+:type det_width: :class:`float`
+:param det_count: Number of detector pixels.
+:type det_count: :class:`int`
+:param angles: Array of angles in radians.
+:type angles: :class:`numpy.ndarray`
+:param matrix_id: ID of the sparse matrix.
+:type matrix_id: :class:`int`
+:returns: A projection geometry based on a sparse matrix.
+
+"""
+ if intype == 'parallel':
+ if len(args) < 3:
+ raise Exception(
+ 'not enough variables: astra_create_proj_geom(parallel, detector_spacing, det_count, angles)')
+ return {'type': 'parallel', 'DetectorWidth': args[0], 'DetectorCount': args[1], 'ProjectionAngles': args[2]}
+ elif intype == 'fanflat':
+ if len(args) < 5:
+ raise Exception('not enough variables: astra_create_proj_geom(fanflat, det_width, det_count, angles, source_origin, source_det)')
+ return {'type': 'fanflat', 'DetectorWidth': args[0], 'DetectorCount': args[1], 'ProjectionAngles': args[2], 'DistanceOriginSource': args[3], 'DistanceOriginDetector': args[4]}
+ elif intype == 'fanflat_vec':
+ if len(args) < 2:
+ raise Exception('not enough variables: astra_create_proj_geom(fanflat_vec, det_count, V)')
+ if not args[1].shape[1] == 6:
+ raise Exception('V should be a Nx6 matrix, with N the number of projections')
+ return {'type':'fanflat_vec', 'DetectorCount':args[0], 'Vectors':args[1]}
+ elif intype == 'parallel3d':
+ if len(args) < 5:
+ raise Exception('not enough variables: astra_create_proj_geom(parallel3d, detector_spacing_x, detector_spacing_y, det_row_count, det_col_count, angles)')
+ return {'type':'parallel3d', 'DetectorSpacingX':args[0], 'DetectorSpacingY':args[1], 'DetectorRowCount':args[2], 'DetectorColCount':args[3],'ProjectionAngles':args[4]}
+ elif intype == 'cone':
+ if len(args) < 7:
+ raise Exception('not enough variables: astra_create_proj_geom(cone, detector_spacing_x, detector_spacing_y, det_row_count, det_col_count, angles, source_origin, source_det)')
+ return {'type': 'cone','DetectorSpacingX':args[0], 'DetectorSpacingY':args[1], 'DetectorRowCount':args[2],'DetectorColCount':args[3],'ProjectionAngles':args[4],'DistanceOriginSource': args[5],'DistanceOriginDetector':args[6]}
+ elif intype == 'cone_vec':
+ if len(args) < 3:
+ raise Exception('not enough variables: astra_create_proj_geom(cone_vec, det_row_count, det_col_count, V)')
+ if not args[2].shape[1] == 12:
+ raise Exception('V should be a Nx12 matrix, with N the number of projections')
+ return {'type': 'cone_vec','DetectorRowCount':args[0],'DetectorColCount':args[1],'Vectors':args[2]}
+ elif intype == 'parallel3d_vec':
+ if len(args) < 3:
+ raise Exception('not enough variables: astra_create_proj_geom(parallel3d_vec, det_row_count, det_col_count, V)')
+ if not args[2].shape[1] == 12:
+ raise Exception('V should be a Nx12 matrix, with N the number of projections')
+ return {'type': 'parallel3d_vec','DetectorRowCount':args[0],'DetectorColCount':args[1],'Vectors':args[2]}
+ elif intype == 'sparse_matrix':
+ if len(args) < 4:
+ raise Exception(
+ 'not enough variables: astra_create_proj_geom(sparse_matrix, det_width, det_count, angles, matrix_id)')
+ return {'type': 'sparse_matrix', 'DetectorWidth': args[0], 'DetectorCount': args[1], 'ProjectionAngles': args[2], 'MatrixID': args[3]}
+ else:
+ raise Exception('Error: unknown type ' + intype)
+
+
+def create_backprojection(data, proj_id, returnData=True):
+ """Create a backprojection of a sinogram (2D).
+
+:param data: Sinogram data or ID.
+:type data: :class:`numpy.ndarray` or :class:`int`
+:param proj_id: ID of the projector to use.
+:type proj_id: :class:`int`
+:param returnData: If False, only return the ID of the backprojection.
+:type returnData: :class:`bool`
+:returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`) -- If ``returnData=False``, returns the ID of the backprojection. Otherwise, returns a tuple containing the ID of the backprojection and the backprojection itself, in that order.
+
+"""
+ proj_geom = projector.projection_geometry(proj_id)
+ vol_geom = projector.volume_geometry(proj_id)
+ if isinstance(data, np.ndarray):
+ sino_id = data2d.create('-sino', proj_geom, data)
+ else:
+ sino_id = data
+ vol_id = data2d.create('-vol', vol_geom, 0)
+
+ if projector.is_cuda(proj_id):
+ algString = 'BP_CUDA'
+ else:
+ algString = 'BP'
+
+ cfg = astra_dict(algString)
+ cfg['ProjectorId'] = proj_id
+ cfg['ProjectionDataId'] = sino_id
+ cfg['ReconstructionDataId'] = vol_id
+ alg_id = algorithm.create(cfg)
+ algorithm.run(alg_id)
+ algorithm.delete(alg_id)
+
+ if isinstance(data, np.ndarray):
+ data2d.delete(sino_id)
+
+ if returnData:
+ return vol_id, data2d.get(vol_id)
+ else:
+ return vol_id
+
+def create_backprojection3d_gpu(data, proj_geom, vol_geom, returnData=True):
+ """Create a backprojection of a sinogram (3D) using CUDA.
+
+:param data: Sinogram data or ID.
+:type data: :class:`numpy.ndarray` or :class:`int`
+:param proj_geom: Projection geometry.
+:type proj_geom: :class:`dict`
+:param vol_geom: Volume geometry.
+:type vol_geom: :class:`dict`
+:param returnData: If False, only return the ID of the backprojection.
+:type returnData: :class:`bool`
+:returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`) -- If ``returnData=False``, returns the ID of the backprojection. Otherwise, returns a tuple containing the ID of the backprojection and the backprojection itself, in that order.
+
+"""
+ if isinstance(data, np.ndarray):
+ sino_id = data3d.create('-sino', proj_geom, data)
+ else:
+ sino_id = data
+
+ vol_id = data3d.create('-vol', vol_geom, 0)
+
+ cfg = astra_dict('BP3D_CUDA')
+ cfg['ProjectionDataId'] = sino_id
+ cfg['ReconstructionDataId'] = vol_id
+ alg_id = algorithm.create(cfg)
+ algorithm.run(alg_id)
+ algorithm.delete(alg_id)
+
+ if isinstance(data, np.ndarray):
+ data3d.delete(sino_id)
+
+ if returnData:
+ return vol_id, data3d.get(vol_id)
+ else:
+ return vol_id
+
+
+def create_sino(data, proj_id, returnData=True, gpuIndex=None):
+ """Create a forward projection of an image (2D).
+
+ :param data: Image data or ID.
+ :type data: :class:`numpy.ndarray` or :class:`int`
+ :param proj_id: ID of the projector to use.
+ :type proj_id: :class:`int`
+ :param returnData: If False, only return the ID of the forward projection.
+ :type returnData: :class:`bool`
+ :param gpuIndex: Optional GPU index.
+ :type gpuIndex: :class:`int`
+ :returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`)
+
+ If ``returnData=False``, returns the ID of the forward
+ projection. Otherwise, returns a tuple containing the ID of the
+ forward projection and the forward projection itself, in that
+ order.
+"""
+ proj_geom = projector.projection_geometry(proj_id)
+ vol_geom = projector.volume_geometry(proj_id)
+
+ if isinstance(data, np.ndarray):
+ volume_id = data2d.create('-vol', vol_geom, data)
+ else:
+ volume_id = data
+ sino_id = data2d.create('-sino', proj_geom, 0)
+ if projector.is_cuda(proj_id):
+ algString = 'FP_CUDA'
+ else:
+ algString = 'FP'
+ cfg = astra_dict(algString)
+ cfg['ProjectorId'] = proj_id
+ if gpuIndex is not None:
+ cfg['option'] = {'GPUindex': gpuIndex}
+ cfg['ProjectionDataId'] = sino_id
+ cfg['VolumeDataId'] = volume_id
+ alg_id = algorithm.create(cfg)
+ algorithm.run(alg_id)
+ algorithm.delete(alg_id)
+
+ if isinstance(data, np.ndarray):
+ data2d.delete(volume_id)
+ if returnData:
+ return sino_id, data2d.get(sino_id)
+ else:
+ return sino_id
+
+
+
+def create_sino3d_gpu(data, proj_geom, vol_geom, returnData=True, gpuIndex=None):
+ """Create a forward projection of an image (3D).
+
+:param data: Image data or ID.
+:type data: :class:`numpy.ndarray` or :class:`int`
+:param proj_geom: Projection geometry.
+:type proj_geom: :class:`dict`
+:param vol_geom: Volume geometry.
+:type vol_geom: :class:`dict`
+:param returnData: If False, only return the ID of the forward projection.
+:type returnData: :class:`bool`
+:param gpuIndex: Optional GPU index.
+:type gpuIndex: :class:`int`
+:returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`) -- If ``returnData=False``, returns the ID of the forward projection. Otherwise, returns a tuple containing the ID of the forward projection and the forward projection itself, in that order.
+
+"""
+
+ if isinstance(data, np.ndarray):
+ volume_id = data3d.create('-vol', vol_geom, data)
+ else:
+ volume_id = data
+ sino_id = data3d.create('-sino', proj_geom, 0)
+ algString = 'FP3D_CUDA'
+ cfg = astra_dict(algString)
+ if not gpuIndex==None:
+ cfg['option']={'GPUindex':gpuIndex}
+ cfg['ProjectionDataId'] = sino_id
+ cfg['VolumeDataId'] = volume_id
+ alg_id = algorithm.create(cfg)
+ algorithm.run(alg_id)
+ algorithm.delete(alg_id)
+
+ if isinstance(data, np.ndarray):
+ data3d.delete(volume_id)
+ if returnData:
+ return sino_id, data3d.get(sino_id)
+ else:
+ return sino_id
+
+
+def create_reconstruction(rec_type, proj_id, sinogram, iterations=1, use_mask='no', mask=np.array([]), use_minc='no', minc=0, use_maxc='no', maxc=255, returnData=True, filterType=None, filterData=None):
+ """Create a reconstruction of a sinogram (2D).
+
+:param rec_type: Name of the reconstruction algorithm.
+:type rec_type: :class:`string`
+:param proj_id: ID of the projector to use.
+:type proj_id: :class:`int`
+:param sinogram: Sinogram data or ID.
+:type sinogram: :class:`numpy.ndarray` or :class:`int`
+:param iterations: Number of iterations to run.
+:type iterations: :class:`int`
+:param use_mask: Whether to use a mask.
+:type use_mask: ``'yes'`` or ``'no'``
+:param mask: Mask data or ID
+:type mask: :class:`numpy.ndarray` or :class:`int`
+:param use_minc: Whether to force a minimum value on the reconstruction pixels.
+:type use_minc: ``'yes'`` or ``'no'``
+:param minc: Minimum value to use.
+:type minc: :class:`float`
+:param use_maxc: Whether to force a maximum value on the reconstruction pixels.
+:type use_maxc: ``'yes'`` or ``'no'``
+:param maxc: Maximum value to use.
+:type maxc: :class:`float`
+:param returnData: If False, only return the ID of the reconstruction.
+:type returnData: :class:`bool`
+:param filterType: Which type of filter to use for filter-based methods.
+:type filterType: :class:`string`
+:param filterData: Optional filter data for filter-based methods.
+:type filterData: :class:`numpy.ndarray`
+:returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`) -- If ``returnData=False``, returns the ID of the reconstruction. Otherwise, returns a tuple containing the ID of the reconstruction and reconstruction itself, in that order.
+
+"""
+ proj_geom = projector.projection_geometry(proj_id)
+ if isinstance(sinogram, np.ndarray):
+ sino_id = data2d.create('-sino', proj_geom, sinogram)
+ else:
+ sino_id = sinogram
+ vol_geom = projector.volume_geometry(proj_id)
+ recon_id = data2d.create('-vol', vol_geom, 0)
+ cfg = astra_dict(rec_type)
+ cfg['ProjectorId'] = proj_id
+ cfg['ProjectionDataId'] = sino_id
+ cfg['ReconstructionDataId'] = recon_id
+ cfg['options'] = {}
+ if use_mask == 'yes':
+ if isinstance(mask, np.ndarray):
+ mask_id = data2d.create('-vol', vol_geom, mask)
+ else:
+ mask_id = mask
+ cfg['options']['ReconstructionMaskId'] = mask_id
+ if not filterType == None:
+ cfg['FilterType'] = filterType
+ if not filterData == None:
+ if isinstance(filterData, np.ndarray):
+ nexpow = int(
+ pow(2, math.ceil(math.log(2 * proj_geom['DetectorCount'], 2))))
+ filtSize = nexpow / 2 + 1
+ filt_proj_geom = create_proj_geom(
+ 'parallel', 1.0, filtSize, proj_geom['ProjectionAngles'])
+ filt_id = data2d.create('-sino', filt_proj_geom, filterData)
+ else:
+ filt_id = filterData
+ cfg['FilterSinogramId'] = filt_id
+ cfg['options']['UseMinConstraint'] = use_minc
+ cfg['options']['MinConstraintValue'] = minc
+ cfg['options']['UseMaxConstraint'] = use_maxc
+ cfg['options']['MaxConstraintValue'] = maxc
+ cfg['options']['ProjectionOrder'] = 'random'
+ alg_id = algorithm.create(cfg)
+ algorithm.run(alg_id, iterations)
+
+ algorithm.delete(alg_id)
+
+ if isinstance(sinogram, np.ndarray):
+ data2d.delete(sino_id)
+ if use_mask == 'yes' and isinstance(mask, np.ndarray):
+ data2d.delete(mask_id)
+ if not filterData == None:
+ if isinstance(filterData, np.ndarray):
+ data2d.delete(filt_id)
+ if returnData:
+ return recon_id, data2d.get(recon_id)
+ else:
+ return recon_id
+
+
+def create_projector(proj_type, proj_geom, vol_geom):
+ """Create a 2D projector.
+
+:param proj_type: Projector type, such as ``'line'``, ``'linear'``, ...
+:type proj_type: :class:`string`
+:param proj_geom: Projection geometry.
+:type proj_geom: :class:`dict`
+:param vol_geom: Volume geometry.
+:type vol_geom: :class:`dict`
+:returns: :class:`int` -- The ID of the projector.
+
+"""
+ if proj_type == 'blob':
+ raise Exception('Blob type not yet implemented')
+ cfg = astra_dict(proj_type)
+ cfg['ProjectionGeometry'] = proj_geom
+ cfg['VolumeGeometry'] = vol_geom
+ types3d = ['linear3d', 'linearcone', 'cuda3d']
+ if proj_type in types3d:
+ return projector3d.create(cfg)
+ else:
+ return projector.create(cfg)
diff --git a/python/astra/data2d.py b/python/astra/data2d.py
new file mode 100644
index 0000000..8c4be03
--- /dev/null
+++ b/python/astra/data2d.py
@@ -0,0 +1,120 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from . import data2d_c as d
+
+def clear():
+ """Clear all 2D data objects."""
+ return d.clear()
+
+def delete(ids):
+ """Delete a 2D object.
+
+ :param ids: ID or list of ID's to delete.
+ :type ids: :class:`int` or :class:`list`
+
+ """
+ return d.delete(ids)
+
+def create(datatype, geometry, data=None):
+ """Create a 2D object.
+
+ :param datatype: Data object type, '-vol' or '-sino'.
+ :type datatype: :class:`string`
+ :param geometry: Volume or projection geometry.
+ :type geometry: :class:`dict`
+ :param data: Data to fill the constructed object with, either a scalar or array.
+ :type data: :class:`float` or :class:`numpy.ndarray`
+ :returns: :class:`int` -- the ID of the constructed object.
+
+ """
+ return d.create(datatype,geometry,data)
+
+def store(i, data):
+ """Fill existing 2D object with data.
+
+ :param i: ID of object to fill.
+ :type i: :class:`int`
+ :param data: Data to fill the object with, either a scalar or array.
+ :type data: :class:`float` or :class:`numpy.ndarray`
+
+ """
+ return d.store(i, data)
+
+def get_geometry(i):
+ """Get the geometry of a 2D object.
+
+ :param i: ID of object.
+ :type i: :class:`int`
+ :returns: :class:`dict` -- The geometry of object with ID ``i``.
+
+ """
+ return d.get_geometry(i)
+
+def change_geometry(i, geom):
+ """Change the geometry of a 2D object.
+
+ :param i: ID of object.
+ :type i: :class:`int`
+ :param geom: new geometry.
+ :type geom: :class:`dict`
+
+ """
+ return d.change_geometry(i, geom)
+
+def get(i):
+ """Get a 2D object.
+
+ :param i: ID of object to get.
+ :type i: :class:`int`
+ :returns: :class:`numpy.ndarray` -- The object data.
+
+ """
+ return d.get(i)
+
+def get_shared(i):
+ """Get a 2D object with memory shared between the ASTRA toolbox and numpy array.
+
+ :param i: ID of object to get.
+ :type i: :class:`int`
+ :returns: :class:`numpy.ndarray` -- The object data.
+
+ """
+ return d.get_shared(i)
+
+
+def get_single(i):
+ """Get a 2D object in single precision.
+
+ :param i: ID of object to get.
+ :type i: :class:`int`
+ :returns: :class:`numpy.ndarray` -- The object data.
+
+ """
+ return d.get_single(i)
+
+def info():
+ """Print info on 2D objects in memory."""
+ return d.info()
diff --git a/python/astra/data2d_c.pyx b/python/astra/data2d_c.pyx
new file mode 100644
index 0000000..b9c105e
--- /dev/null
+++ b/python/astra/data2d_c.pyx
@@ -0,0 +1,233 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+# distutils: language = c++
+# distutils: libraries = astra
+
+import six
+
+cimport cython
+from cython cimport view
+
+cimport PyData2DManager
+from .PyData2DManager cimport CData2DManager
+
+cimport PyXMLDocument
+from .PyXMLDocument cimport XMLDocument
+
+import numpy as np
+
+cimport numpy as np
+np.import_array()
+
+
+from .PyIncludes cimport *
+cimport utils
+from .utils import wrap_from_bytes
+
+cdef CData2DManager * man2d = <CData2DManager * >PyData2DManager.getSingletonPtr()
+
+def clear():
+ man2d.clear()
+
+
+def delete(ids):
+ try:
+ for i in ids:
+ man2d.remove(i)
+ except TypeError:
+ man2d.remove(ids)
+
+
+def create(datatype, geometry, data=None):
+ cdef Config *cfg
+ cdef CVolumeGeometry2D * pGeometry
+ cdef CProjectionGeometry2D * ppGeometry
+ cdef CFloat32Data2D * pDataObject2D
+ if datatype == '-vol':
+ cfg = utils.dictToConfig(six.b('VolumeGeometry'), geometry)
+ pGeometry = new CVolumeGeometry2D()
+ if not pGeometry.initialize(cfg[0]):
+ del cfg
+ del pGeometry
+ raise Exception('Geometry class not initialized.')
+ pDataObject2D = <CFloat32Data2D * > new CFloat32VolumeData2D(pGeometry)
+ del cfg
+ del pGeometry
+ elif datatype == '-sino':
+ cfg = utils.dictToConfig(six.b('ProjectionGeometry'), geometry)
+ tpe = wrap_from_bytes(cfg.self.getAttribute(six.b('type')))
+ if (tpe == 'sparse_matrix'):
+ ppGeometry = <CProjectionGeometry2D * >new CSparseMatrixProjectionGeometry2D()
+ elif (tpe == 'fanflat'):
+ ppGeometry = <CProjectionGeometry2D * >new CFanFlatProjectionGeometry2D()
+ elif (tpe == 'fanflat_vec'):
+ ppGeometry = <CProjectionGeometry2D * >new CFanFlatVecProjectionGeometry2D()
+ else:
+ ppGeometry = <CProjectionGeometry2D * >new CParallelProjectionGeometry2D()
+ if not ppGeometry.initialize(cfg[0]):
+ del cfg
+ del ppGeometry
+ raise Exception('Geometry class not initialized.')
+ pDataObject2D = <CFloat32Data2D * > new CFloat32ProjectionData2D(ppGeometry)
+ del ppGeometry
+ del cfg
+ else:
+ raise Exception("Invalid datatype. Please specify '-vol' or '-sino'.")
+
+ if not pDataObject2D.isInitialized():
+ del pDataObject2D
+ raise Exception("Couldn't initialize data object.")
+
+ fillDataObject(pDataObject2D, data)
+
+ return man2d.store(pDataObject2D)
+
+cdef fillDataObject(CFloat32Data2D * obj, data):
+ if data is None:
+ fillDataObjectScalar(obj, 0)
+ else:
+ if isinstance(data, np.ndarray):
+ fillDataObjectArray(obj, np.ascontiguousarray(data,dtype=np.float32))
+ else:
+ fillDataObjectScalar(obj, np.float32(data))
+
+cdef fillDataObjectScalar(CFloat32Data2D * obj, float s):
+ cdef int i
+ for i in range(obj.getSize()):
+ obj.getData()[i] = s
+
+@cython.boundscheck(False)
+@cython.wraparound(False)
+cdef fillDataObjectArray(CFloat32Data2D * obj, float [:,::1] data):
+ if (not data.shape[0] == obj.getHeight()) or (not data.shape[1] == obj.getWidth()):
+ raise Exception(
+ "The dimensions of the data do not match those specified in the geometry.")
+ cdef float [:,::1] cView = <float[:data.shape[0],:data.shape[1]]> obj.getData2D()[0]
+ cView[:] = data
+
+cdef CFloat32Data2D * getObject(i) except NULL:
+ cdef CFloat32Data2D * pDataObject = man2d.get(i)
+ if pDataObject == NULL:
+ raise Exception("Data object not found")
+ if not pDataObject.isInitialized():
+ raise Exception("Data object not initialized properly.")
+ return pDataObject
+
+
+def store(i, data):
+ cdef CFloat32Data2D * pDataObject = getObject(i)
+ fillDataObject(pDataObject, data)
+
+
+def get_geometry(i):
+ cdef CFloat32Data2D * pDataObject = getObject(i)
+ cdef CFloat32ProjectionData2D * pDataObject2
+ cdef CFloat32VolumeData2D * pDataObject3
+ if pDataObject.getType() == TWOPROJECTION:
+ pDataObject2 = <CFloat32ProjectionData2D * >pDataObject
+ geom = utils.configToDict(pDataObject2.getGeometry().getConfiguration())
+ elif pDataObject.getType() == TWOVOLUME:
+ pDataObject3 = <CFloat32VolumeData2D * >pDataObject
+ geom = utils.configToDict(pDataObject3.getGeometry().getConfiguration())
+ else:
+ raise Exception("Not a known data object")
+ return geom
+
+
+def change_geometry(i, geom):
+ cdef Config *cfg
+ cdef CVolumeGeometry2D * pGeometry
+ cdef CProjectionGeometry2D * ppGeometry
+ cdef CFloat32Data2D * pDataObject = getObject(i)
+ cdef CFloat32ProjectionData2D * pDataObject2
+ cdef CFloat32VolumeData2D * pDataObject3
+ if pDataObject.getType() == TWOPROJECTION:
+ pDataObject2 = <CFloat32ProjectionData2D * >pDataObject
+ cfg = utils.dictToConfig(six.b('ProjectionGeometry'), geom)
+ tpe = wrap_from_bytes(cfg.self.getAttribute(six.b('type')))
+ if (tpe == 'sparse_matrix'):
+ ppGeometry = <CProjectionGeometry2D * >new CSparseMatrixProjectionGeometry2D()
+ elif (tpe == 'fanflat'):
+ ppGeometry = <CProjectionGeometry2D * >new CFanFlatProjectionGeometry2D()
+ elif (tpe == 'fanflat_vec'):
+ ppGeometry = <CProjectionGeometry2D * >new CFanFlatVecProjectionGeometry2D()
+ else:
+ ppGeometry = <CProjectionGeometry2D * >new CParallelProjectionGeometry2D()
+ if not ppGeometry.initialize(cfg[0]):
+ del cfg
+ del ppGeometry
+ raise Exception('Geometry class not initialized.')
+ if (ppGeometry.getDetectorCount() != pDataObject2.getDetectorCount() or ppGeometry.getProjectionAngleCount() != pDataObject2.getAngleCount()):
+ del ppGeometry
+ del cfg
+ raise Exception(
+ "The dimensions of the data do not match those specified in the geometry.")
+ pDataObject2.changeGeometry(ppGeometry)
+ del ppGeometry
+ del cfg
+ elif pDataObject.getType() == TWOVOLUME:
+ pDataObject3 = <CFloat32VolumeData2D * >pDataObject
+ cfg = utils.dictToConfig(six.b('VolumeGeometry'), geom)
+ pGeometry = new CVolumeGeometry2D()
+ if not pGeometry.initialize(cfg[0]):
+ del cfg
+ del pGeometry
+ raise Exception('Geometry class not initialized.')
+ if (pGeometry.getGridColCount() != pDataObject3.getWidth() or pGeometry.getGridRowCount() != pDataObject3.getHeight()):
+ del cfg
+ del pGeometry
+ raise Exception(
+ 'The dimensions of the data do not match those specified in the geometry.')
+ pDataObject3.changeGeometry(pGeometry)
+ del cfg
+ del pGeometry
+ else:
+ raise Exception("Not a known data object")
+
+@cython.boundscheck(False)
+@cython.wraparound(False)
+def get(i):
+ cdef CFloat32Data2D * pDataObject = getObject(i)
+ outArr = np.empty((pDataObject.getHeight(), pDataObject.getWidth()),dtype=np.float32,order='C')
+ cdef float [:,::1] mView = outArr
+ cdef float [:,::1] cView = <float[:outArr.shape[0],:outArr.shape[1]]> pDataObject.getData2D()[0]
+ mView[:] = cView
+ return outArr
+
+def get_shared(i):
+ cdef CFloat32Data2D * pDataObject = getObject(i)
+ cdef np.npy_intp shape[2]
+ shape[0] = <np.npy_intp> pDataObject.getHeight()
+ shape[1] = <np.npy_intp> pDataObject.getWidth()
+ return np.PyArray_SimpleNewFromData(2,shape,np.NPY_FLOAT32,<void *>pDataObject.getData2D()[0])
+
+
+def get_single(i):
+ raise Exception("Not yet implemented")
+
+
+def info():
+ six.print_(wrap_from_bytes(man2d.info()))
diff --git a/python/astra/data3d.py b/python/astra/data3d.py
new file mode 100644
index 0000000..a2e9201
--- /dev/null
+++ b/python/astra/data3d.py
@@ -0,0 +1,118 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from . import data3d_c as d
+
+def create(datatype,geometry,data=None):
+ """Create a 3D object.
+
+ :param datatype: Data object type, '-vol' or '-sino'.
+ :type datatype: :class:`string`
+ :param geometry: Volume or projection geometry.
+ :type geometry: :class:`dict`
+ :param data: Data to fill the constructed object with, either a scalar or array.
+ :type data: :class:`float` or :class:`numpy.ndarray`
+ :returns: :class:`int` -- the ID of the constructed object.
+
+ """
+ return d.create(datatype,geometry,data)
+
+def get(i):
+ """Get a 3D object.
+
+ :param i: ID of object to get.
+ :type i: :class:`int`
+ :returns: :class:`numpy.ndarray` -- The object data.
+
+ """
+ return d.get(i)
+
+def get_shared(i):
+ """Get a 3D object with memory shared between the ASTRA toolbox and numpy array.
+
+ :param i: ID of object to get.
+ :type i: :class:`int`
+ :returns: :class:`numpy.ndarray` -- The object data.
+
+ """
+ return d.get_shared(i)
+
+def get_single(i):
+ """Get a 3D object in single precision.
+
+ :param i: ID of object to get.
+ :type i: :class:`int`
+ :returns: :class:`numpy.ndarray` -- The object data.
+
+ """
+ return g.get_single(i)
+
+def store(i,data):
+ """Fill existing 3D object with data.
+
+ :param i: ID of object to fill.
+ :type i: :class:`int`
+ :param data: Data to fill the object with, either a scalar or array.
+ :type data: :class:`float` or :class:`numpy.ndarray`
+
+ """
+ return d.store(i,data)
+
+def get_geometry(i):
+ """Get the geometry of a 3D object.
+
+ :param i: ID of object.
+ :type i: :class:`int`
+ :returns: :class:`dict` -- The geometry of object with ID ``i``.
+
+ """
+ return d.get_geometry(i)
+
+def dimensions(i):
+ """Get dimensions of a 3D object.
+
+ :param i: ID of object.
+ :type i: :class:`int`
+ :returns: :class:`tuple` -- dimensions of object with ID ``i``.
+
+ """
+ return d.dimensions(i)
+
+def delete(ids):
+ """Delete a 2D object.
+
+ :param ids: ID or list of ID's to delete.
+ :type ids: :class:`int` or :class:`list`
+
+ """
+ return d.delete(ids)
+
+def clear():
+ """Clear all 3D data objects."""
+ return d.clear()
+
+def info():
+ """Print info on 3D objects in memory."""
+ return d.info()
diff --git a/python/astra/data3d_c.pyx b/python/astra/data3d_c.pyx
new file mode 100644
index 0000000..4b069f7
--- /dev/null
+++ b/python/astra/data3d_c.pyx
@@ -0,0 +1,197 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+# distutils: language = c++
+# distutils: libraries = astra
+
+import six
+
+cimport cython
+
+cimport PyData3DManager
+from .PyData3DManager cimport CData3DManager
+
+from .PyIncludes cimport *
+import numpy as np
+
+cimport numpy as np
+np.import_array()
+
+cimport PyXMLDocument
+from .PyXMLDocument cimport XMLDocument
+
+cimport utils
+from .utils import wrap_from_bytes
+
+cdef CData3DManager * man3d = <CData3DManager * >PyData3DManager.getSingletonPtr()
+
+cdef extern from *:
+ CFloat32Data3DMemory * dynamic_cast_mem "dynamic_cast<astra::CFloat32Data3DMemory*>" (CFloat32Data3D * ) except NULL
+
+def create(datatype,geometry,data=None):
+ cdef Config *cfg
+ cdef CVolumeGeometry3D * pGeometry
+ cdef CProjectionGeometry3D * ppGeometry
+ cdef CFloat32Data3DMemory * pDataObject3D
+ cdef CConeProjectionGeometry3D* pppGeometry
+ if datatype == '-vol':
+ cfg = utils.dictToConfig(six.b('VolumeGeometry'), geometry)
+ pGeometry = new CVolumeGeometry3D()
+ if not pGeometry.initialize(cfg[0]):
+ del cfg
+ del pGeometry
+ raise Exception('Geometry class not initialized.')
+ pDataObject3D = <CFloat32Data3DMemory * > new CFloat32VolumeData3DMemory(pGeometry)
+ del cfg
+ del pGeometry
+ elif datatype == '-sino' or datatype == '-proj3d':
+ cfg = utils.dictToConfig(six.b('ProjectionGeometry'), geometry)
+ tpe = wrap_from_bytes(cfg.self.getAttribute(six.b('type')))
+ if (tpe == "parallel3d"):
+ ppGeometry = <CProjectionGeometry3D*> new CParallelProjectionGeometry3D();
+ elif (tpe == "parallel3d_vec"):
+ ppGeometry = <CProjectionGeometry3D*> new CParallelVecProjectionGeometry3D();
+ elif (tpe == "cone"):
+ ppGeometry = <CProjectionGeometry3D*> new CConeProjectionGeometry3D();
+ elif (tpe == "cone_vec"):
+ ppGeometry = <CProjectionGeometry3D*> new CConeVecProjectionGeometry3D();
+ else:
+ raise Exception("Invalid geometry type.")
+
+ if not ppGeometry.initialize(cfg[0]):
+ del cfg
+ del ppGeometry
+ raise Exception('Geometry class not initialized.')
+ pDataObject3D = <CFloat32Data3DMemory * > new CFloat32ProjectionData3DMemory(ppGeometry)
+ del ppGeometry
+ del cfg
+ elif datatype == "-sinocone":
+ cfg = utils.dictToConfig(six.b('ProjectionGeometry'), geometry)
+ pppGeometry = new CConeProjectionGeometry3D()
+ if not pppGeometry.initialize(cfg[0]):
+ del cfg
+ del pppGeometry
+ raise Exception('Geometry class not initialized.')
+ pDataObject3D = <CFloat32Data3DMemory * > new CFloat32ProjectionData3DMemory(pppGeometry)
+ else:
+ raise Exception("Invalid datatype. Please specify '-vol' or '-proj3d'.")
+
+ if not pDataObject3D.isInitialized():
+ del pDataObject3D
+ raise Exception("Couldn't initialize data object.")
+
+ fillDataObject(pDataObject3D, data)
+
+ pDataObject3D.updateStatistics()
+
+ return man3d.store(<CFloat32Data3D*>pDataObject3D)
+
+def get_geometry(i):
+ cdef CFloat32Data3DMemory * pDataObject = dynamic_cast_mem(getObject(i))
+ cdef CFloat32ProjectionData3DMemory * pDataObject2
+ cdef CFloat32VolumeData3DMemory * pDataObject3
+ if pDataObject.getType() == THREEPROJECTION:
+ pDataObject2 = <CFloat32ProjectionData3DMemory * >pDataObject
+ geom = utils.configToDict(pDataObject2.getGeometry().getConfiguration())
+ elif pDataObject.getType() == THREEVOLUME:
+ pDataObject3 = <CFloat32VolumeData3DMemory * >pDataObject
+ geom = utils.configToDict(pDataObject3.getGeometry().getConfiguration())
+ else:
+ raise Exception("Not a known data object")
+ return geom
+
+cdef fillDataObject(CFloat32Data3DMemory * obj, data):
+ if data is None:
+ fillDataObjectScalar(obj, 0)
+ else:
+ if isinstance(data, np.ndarray):
+ fillDataObjectArray(obj, np.ascontiguousarray(data,dtype=np.float32))
+ else:
+ fillDataObjectScalar(obj, np.float32(data))
+
+cdef fillDataObjectScalar(CFloat32Data3DMemory * obj, float s):
+ cdef int i
+ for i in range(obj.getSize()):
+ obj.getData()[i] = s
+
+@cython.boundscheck(False)
+@cython.wraparound(False)
+cdef fillDataObjectArray(CFloat32Data3DMemory * obj, float [:,:,::1] data):
+ if (not data.shape[0] == obj.getDepth()) or (not data.shape[1] == obj.getHeight()) or (not data.shape[2] == obj.getWidth()):
+ raise Exception(
+ "The dimensions of the data do not match those specified in the geometry.")
+ cdef float [:,:,::1] cView = <float[:data.shape[0],:data.shape[1],:data.shape[2]]> obj.getData3D()[0][0]
+ cView[:] = data
+
+cdef CFloat32Data3D * getObject(i) except NULL:
+ cdef CFloat32Data3D * pDataObject = man3d.get(i)
+ if pDataObject == NULL:
+ raise Exception("Data object not found")
+ if not pDataObject.isInitialized():
+ raise Exception("Data object not initialized properly.")
+ return pDataObject
+
+@cython.boundscheck(False)
+@cython.wraparound(False)
+def get(i):
+ cdef CFloat32Data3DMemory * pDataObject = dynamic_cast_mem(getObject(i))
+ outArr = np.empty((pDataObject.getDepth(),pDataObject.getHeight(), pDataObject.getWidth()),dtype=np.float32,order='C')
+ cdef float [:,:,::1] mView = outArr
+ cdef float [:,:,::1] cView = <float[:outArr.shape[0],:outArr.shape[1],:outArr.shape[2]]> pDataObject.getData3D()[0][0]
+ mView[:] = cView
+ return outArr
+
+def get_shared(i):
+ cdef CFloat32Data3DMemory * pDataObject = dynamic_cast_mem(getObject(i))
+ outArr = np.empty((pDataObject.getDepth(),pDataObject.getHeight(), pDataObject.getWidth()),dtype=np.float32,order='C')
+ cdef np.npy_intp shape[3]
+ shape[0] = <np.npy_intp> pDataObject.getDepth()
+ shape[1] = <np.npy_intp> pDataObject.getHeight()
+ shape[2] = <np.npy_intp> pDataObject.getWidth()
+ return np.PyArray_SimpleNewFromData(3,shape,np.NPY_FLOAT32,<void *>pDataObject.getData3D()[0][0])
+
+def get_single(i):
+ raise Exception("Not yet implemented")
+
+def store(i,data):
+ cdef CFloat32Data3D * pDataObject = getObject(i)
+ fillDataObject(dynamic_cast_mem(pDataObject), data)
+
+def dimensions(i):
+ cdef CFloat32Data3D * pDataObject = getObject(i)
+ return (pDataObject.getWidth(),pDataObject.getHeight(),pDataObject.getDepth())
+
+def delete(ids):
+ try:
+ for i in ids:
+ man3d.remove(i)
+ except TypeError:
+ man3d.remove(ids)
+
+def clear():
+ man3d.clear()
+
+def info():
+ six.print_(wrap_from_bytes(man3d.info()))
diff --git a/python/astra/extrautils.pyx b/python/astra/extrautils.pyx
new file mode 100644
index 0000000..998f5cb
--- /dev/null
+++ b/python/astra/extrautils.pyx
@@ -0,0 +1,43 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+def clipCircle(img):
+ cdef int i,j
+ cdef double x2,y2,mid,bnd
+ cdef long sz,sz2
+ sz = img.shape[0]
+ sz2 = sz*sz
+ bnd = sz2/4.
+ mid = (sz-1.)/2.
+ nDel=0
+ for i in range(sz):
+ for j in range(sz):
+ x2 = (i-mid)*(i-mid)
+ y2 = (j-mid)*(j-mid)
+ if x2+y2>bnd:
+ img[i,j]=0
+ nDel=nDel+1
+ return nDel
diff --git a/python/astra/functions.py b/python/astra/functions.py
new file mode 100644
index 0000000..4025468
--- /dev/null
+++ b/python/astra/functions.py
@@ -0,0 +1,270 @@
+#-----------------------------------------------------------------------
+# Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+# Author: Daniel M. Pelt
+# Contact: D.M.Pelt@cwi.nl
+# Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+# This file is part of the Python interface to the
+# All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+# The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+# The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+"""Additional functions for PyAstraToolbox.
+
+.. moduleauthor:: Daniel M. Pelt <D.M.Pelt@cwi.nl>
+
+
+"""
+
+from . import creators as ac
+import numpy as np
+from six.moves import range
+
+from . import data2d
+from . import data3d
+from . import projector
+from . import algorithm
+
+
+
+def clear():
+ """Clears all used memory of the ASTRA Toolbox.
+
+ .. note::
+ This is irreversible.
+
+ """
+ data2d.clear()
+ data3d.clear()
+ projector.clear()
+ algorithm.clear()
+
+
+def data_op(op, data, scalar, gpu_core, mask=None):
+ """Perform data operation on data.
+
+ :param op: Operation to perform.
+ :param data: Data to perform operation on.
+ :param scalar: Scalar argument to data operation.
+ :param gpu_core: GPU core to perform operation on.
+ :param mask: Optional mask.
+
+ """
+
+ cfg = ac.astra_dict('DataOperation_CUDA')
+ cfg['Operation'] = op
+ cfg['Scalar'] = scalar
+ cfg['DataId'] = data
+ if not mask == None:
+ cfg['MaskId'] = mask
+ cfg['option']['GPUindex'] = gpu_core
+ alg_id = algorithm.create(cfg)
+ algorithm.run(alg_id)
+ algorithm.delete(alg_id)
+
+
+def add_noise_to_sino(sinogram_in, I0, seed=None):
+ """Adds Poisson noise to a sinogram.
+
+ :param sinogram_in: Sinogram to add noise to.
+ :type sinogram_in: :class:`numpy.ndarray`
+ :param I0: Background intensity. Lower values lead to higher noise.
+ :type I0: :class:`float`
+ :returns: :class:`numpy.ndarray` -- the sinogram with added noise.
+
+ """
+
+ if not seed==None:
+ curstate = np.random.get_state()
+ np.random.seed(seed)
+
+ if isinstance(sinogram_in, np.ndarray):
+ sinogramRaw = sinogram_in
+ else:
+ sinogramRaw = data2d.get(sinogram_in)
+ max_sinogramRaw = sinogramRaw.max()
+ sinogramRawScaled = sinogramRaw / max_sinogramRaw
+ # to detector count
+ sinogramCT = I0 * np.exp(-sinogramRawScaled)
+ # add poison noise
+ sinogramCT_C = np.zeros_like(sinogramCT)
+ for i in range(sinogramCT_C.shape[0]):
+ for j in range(sinogramCT_C.shape[1]):
+ sinogramCT_C[i, j] = np.random.poisson(sinogramCT[i, j])
+ # to density
+ sinogramCT_D = sinogramCT_C / I0
+ sinogram_out = -max_sinogramRaw * np.log(sinogramCT_D)
+
+ if not isinstance(sinogram_in, np.ndarray):
+ at.data2d.store(sinogram_in, sinogram_out)
+
+ if not seed==None:
+ np.random.set_state(curstate)
+
+ return sinogram_out
+
+def move_vol_geom(geom, pos, is_relative=False):
+ """Moves center of volume geometry to new position.
+
+ :param geom: Input volume geometry
+ :type geom: :class:`dict`
+ :param pos: Tuple (x,y[,z]) for new position, with the center of the image at (0,0[,0])
+ :type pos: :class:`tuple`
+ :param is_relative: Whether new position is relative to the old position
+ :type is_relative: :class:`bool`
+ :returns: :class:`dict` -- Volume geometry with the new center
+ """
+
+ ret_geom = geom.copy()
+ ret_geom['option'] = geom['option'].copy()
+
+ if not is_relative:
+ ret_geom['option']['WindowMinX'] = -geom['GridColCount']/2.
+ ret_geom['option']['WindowMaxX'] = geom['GridColCount']/2.
+ ret_geom['option']['WindowMinY'] = -geom['GridRowCount']/2.
+ ret_geom['option']['WindowMaxY'] = geom['GridRowCount']/2.
+ if len(pos)>2:
+ ret_geom['option']['WindowMinZ'] = -geom['GridSliceCount']/2.
+ ret_geom['option']['WindowMaxZ'] = geom['GridSliceCount']/2.
+ ret_geom['option']['WindowMinX'] += pos[0]
+ ret_geom['option']['WindowMaxX'] += pos[0]
+ ret_geom['option']['WindowMinY'] += pos[1]
+ ret_geom['option']['WindowMaxY'] += pos[1]
+ if len(pos)>2:
+ ret_geom['option']['WindowMinZ'] += pos[2]
+ ret_geom['option']['WindowMaxZ'] += pos[2]
+ return ret_geom
+
+
+def geom_size(geom, dim=None):
+ """Returns the size of a volume or sinogram, based on the projection or volume geometry.
+
+ :param geom: Geometry to calculate size from
+ :type geometry: :class:`dict`
+ :param dim: Optional axis index to return
+ :type dim: :class:`int`
+ """
+
+ if 'GridSliceCount' in geom:
+ # 3D Volume geometry?
+ s = (geom['GridSliceCount'], geom[
+ 'GridRowCount'], geom['GridColCount'])
+ elif 'GridColCount' in geom:
+ # 2D Volume geometry?
+ s = (geom['GridRowCount'], geom['GridColCount'])
+ elif geom['type'] == 'parallel' or geom['type'] == 'fanflat':
+ s = (len(geom['ProjectionAngles']), geom['DetectorCount'])
+ elif geom['type'] == 'parallel3d' or geom['type'] == 'cone':
+ s = (geom['DetectorRowCount'], len(
+ geom['ProjectionAngles']), geom['DetectorColCount'])
+ elif geom['type'] == 'fanflat_vec':
+ s = (geom['Vectors'].shape[0], geom['DetectorCount'])
+ elif geom['type'] == 'parallel3d_vec' or geom['type'] == 'cone_vec':
+ s = (geom['DetectorRowCount'], geom[
+ 'Vectors'].shape[0], geom['DetectorColCount'])
+
+ if dim != None:
+ s = s[dim]
+
+ return s
+
+
+def geom_2vec(proj_geom):
+ """Returns a vector-based projection geometry from a basic projection geometry.
+
+ :param proj_geom: Projection geometry to convert
+ :type proj_geom: :class:`dict`
+ """
+ if proj_geom['type'] == 'fanflat':
+ angles = proj_geom['ProjectionAngles']
+ vectors = np.zeros((len(angles), 6))
+ for i in range(len(angles)):
+
+ # source
+ vectors[i, 0] = np.sin(angles[i]) * proj_geom['DistanceOriginSource']
+ vectors[i, 1] = -np.cos(angles[i]) * proj_geom['DistanceOriginSource']
+
+ # center of detector
+ vectors[i, 2] = -np.sin(angles[i]) * proj_geom['DistanceOriginDetector']
+ vectors[i, 3] = np.cos(angles[i]) * proj_geom['DistanceOriginDetector']
+
+ # vector from detector pixel 0 to 1
+ vectors[i, 4] = np.cos(angles[i]) * proj_geom['DetectorWidth']
+ vectors[i, 5] = np.sin(angles[i]) * proj_geom['DetectorWidth']
+ proj_geom_out = ac.create_proj_geom(
+ 'fanflat_vec', proj_geom['DetectorCount'], vectors)
+
+ elif proj_geom['type'] == 'cone':
+ angles = proj_geom['ProjectionAngles']
+ vectors = np.zeros((len(angles), 12))
+ for i in range(len(angles)):
+ # source
+ vectors[i, 0] = np.sin(angles[i]) * proj_geom['DistanceOriginSource']
+ vectors[i, 1] = -np.cos(angles[i]) * proj_geom['DistanceOriginSource']
+ vectors[i, 2] = 0
+
+ # center of detector
+ vectors[i, 3] = -np.sin(angles[i]) * proj_geom['DistanceOriginDetector']
+ vectors[i, 4] = np.cos(angles[i]) * proj_geom['DistanceOriginDetector']
+ vectors[i, 5] = 0
+
+ # vector from detector pixel (0,0) to (0,1)
+ vectors[i, 6] = np.cos(angles[i]) * proj_geom['DetectorSpacingX']
+ vectors[i, 7] = np.sin(angles[i]) * proj_geom['DetectorSpacingX']
+ vectors[i, 8] = 0
+
+ # vector from detector pixel (0,0) to (1,0)
+ vectors[i, 9] = 0
+ vectors[i, 10] = 0
+ vectors[i, 11] = proj_geom['DetectorSpacingY']
+
+ proj_geom_out = ac.create_proj_geom(
+ 'cone_vec', proj_geom['DetectorRowCount'], proj_geom['DetectorColCount'], vectors)
+
+ # PARALLEL
+ elif proj_geom['type'] == 'parallel3d':
+ angles = proj_geom['ProjectionAngles']
+ vectors = np.zeros((len(angles), 12))
+ for i in range(len(angles)):
+
+ # ray direction
+ vectors[i, 0] = np.sin(angles[i])
+ vectors[i, 1] = -np.cos(angles[i])
+ vectors[i, 2] = 0
+
+ # center of detector
+ vectors[i, 3] = 0
+ vectors[i, 4] = 0
+ vectors[i, 5] = 0
+
+ # vector from detector pixel (0,0) to (0,1)
+ vectors[i, 6] = np.cos(angles[i]) * proj_geom['DetectorSpacingX']
+ vectors[i, 7] = np.sin(angles[i]) * proj_geom['DetectorSpacingX']
+ vectors[i, 8] = 0
+
+ # vector from detector pixel (0,0) to (1,0)
+ vectors[i, 9] = 0
+ vectors[i, 10] = 0
+ vectors[i, 11] = proj_geom['DetectorSpacingY']
+
+ proj_geom_out = ac.create_proj_geom(
+ 'parallel3d_vec', proj_geom['DetectorRowCount'], proj_geom['DetectorColCount'], vectors)
+
+ else:
+ raise ValueError(
+ 'No suitable vector geometry found for type: ' + proj_geom['type'])
+ return proj_geom_out
diff --git a/python/astra/log.py b/python/astra/log.py
new file mode 100644
index 0000000..3ec0df5
--- /dev/null
+++ b/python/astra/log.py
@@ -0,0 +1,153 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+from . import log_c as l
+
+import inspect
+
+def debug(message):
+ """Log a debug message.
+
+ :param message: Message to log.
+ :type message: :class:`string`
+ """
+ prev_f = inspect.getframeinfo(inspect.currentframe().f_back)
+ l.log_debug(prev_f.filename,prev_f.lineno,message)
+
+def info(message):
+ """Log an info message.
+
+ :param message: Message to log.
+ :type message: :class:`string`
+ """
+ prev_f = inspect.getframeinfo(inspect.currentframe().f_back)
+ l.log_info(prev_f.filename,prev_f.lineno,message)
+
+def warn(message):
+ """Log a warning message.
+
+ :param message: Message to log.
+ :type message: :class:`string`
+ """
+ prev_f = inspect.getframeinfo(inspect.currentframe().f_back)
+ l.log_warn(prev_f.filename,prev_f.lineno,message)
+
+def error(message):
+ """Log an error message.
+
+ :param message: Message to log.
+ :type message: :class:`string`
+ """
+ prev_f = inspect.getframeinfo(inspect.currentframe().f_back)
+ l.log_error(prev_f.filename,prev_f.lineno,message)
+
+def enable():
+ """Enable logging to screen and file."""
+ l.log_enable()
+
+def enableScreen():
+ """Enable logging to screen."""
+ l.log_enableScreen()
+
+def enableFile():
+ """Enable logging to file (note that a file has to be set)."""
+ l.log_enableFile()
+
+def disable():
+ """Disable all logging."""
+ l.log_disable()
+
+def disableScreen():
+ """Disable logging to screen."""
+ l.log_disableScreen()
+
+def disableFile():
+ """Disable logging to file."""
+ l.log_disableFile()
+
+def setFormatFile(fmt):
+ """Set the format string for log messages. Here are the substitutions you may use:
+
+ %f: Source file name generating the log call.
+ %n: Source line number where the log call was made.
+ %m: The message text sent to the logger (after printf formatting).
+ %d: The current date, formatted using the logger's date format.
+ %t: The current time, formatted using the logger's time format.
+ %l: The log level (one of "DEBUG", "INFO", "WARN", or "ERROR").
+ %%: A literal percent sign.
+
+ The default format string is "%d %t %f(%n): %l: %m\n".
+
+ :param fmt: Format to use, end with "\n".
+ :type fmt: :class:`string`
+ """
+ l.log_setFormatFile(fmt)
+
+def setFormatScreen(fmt):
+ """Set the format string for log messages. Here are the substitutions you may use:
+
+ %f: Source file name generating the log call.
+ %n: Source line number where the log call was made.
+ %m: The message text sent to the logger (after printf formatting).
+ %d: The current date, formatted using the logger's date format.
+ %t: The current time, formatted using the logger's time format.
+ %l: The log level (one of "DEBUG", "INFO", "WARN", or "ERROR").
+ %%: A literal percent sign.
+
+ The default format string is "%d %t %f(%n): %l: %m\n".
+
+ :param fmt: Format to use, end with "\n".
+ :type fmt: :class:`string`
+ """
+ l.log_setFormatScreen(fmt)
+
+STDOUT=1
+STDERR=2
+
+DEBUG=0
+INFO=1
+WARN=2
+ERROR=3
+
+def setOutputScreen(fd, level):
+ """Set which screen to output to, and which level to use.
+
+ :param fd: File descriptor of output screen (STDOUT or STDERR).
+ :type fd: :class:`int`
+ :param level: Logging level to use (DEBUG, INFO, WARN, or ERROR).
+ :type level: :class:`int`
+ """
+ l.log_setOutputScreen(fd, level)
+
+def setOutputFile(filename, level):
+ """Set which file to output to, and which level to use.
+
+ :param filename: File name of output file.
+ :type filename: :class:`string`
+ :param level: Logging level to use (DEBUG, INFO, WARN, or ERROR).
+ :type level: :class:`int`
+ """
+ l.log_setOutputFile(filename, level) \ No newline at end of file
diff --git a/python/astra/log_c.pyx b/python/astra/log_c.pyx
new file mode 100644
index 0000000..969cc06
--- /dev/null
+++ b/python/astra/log_c.pyx
@@ -0,0 +1,96 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+# distutils: language = c++
+# distutils: libraries = astra
+
+import six
+
+cdef extern from "astra/Logging.h" namespace "astra":
+ cdef enum log_level:
+ LOG_DEBUG
+ LOG_INFO
+ LOG_WARN
+ LOG_ERROR
+
+cdef extern from "astra/Logging.h" namespace "astra::CLogger":
+ void debug(const char *sfile, int sline, const char *fmt, ...)
+ void info(const char *sfile, int sline, const char *fmt, ...)
+ void warn(const char *sfile, int sline, const char *fmt, ...)
+ void error(const char *sfile, int sline, const char *fmt, ...)
+ void setOutputScreen(int fd, log_level m_eLevel)
+ void setOutputFile(const char *filename, log_level m_eLevel)
+ void enable()
+ void enableScreen()
+ void enableFile()
+ void disable()
+ void disableScreen()
+ void disableFile()
+ void setFormatFile(const char *fmt)
+ void setFormatScreen(const char *fmt)
+
+def log_debug(sfile, sline, message):
+ debug(six.b(sfile),sline,six.b(message))
+
+def log_info(sfile, sline, message):
+ info(six.b(sfile),sline,six.b(message))
+
+def log_warn(sfile, sline, message):
+ warn(six.b(sfile),sline,six.b(message))
+
+def log_error(sfile, sline, message):
+ error(six.b(sfile),sline,six.b(message))
+
+def log_enable():
+ enable()
+
+def log_enableScreen():
+ enableScreen()
+
+def log_enableFile():
+ enableFile()
+
+def log_disable():
+ disable()
+
+def log_disableScreen():
+ disableScreen()
+
+def log_disableFile():
+ disableFile()
+
+def log_setFormatFile(fmt):
+ setFormatFile(six.b(fmt))
+
+def log_setFormatScreen(fmt):
+ setFormatScreen(six.b(fmt))
+
+enumList = [LOG_DEBUG,LOG_INFO,LOG_WARN,LOG_ERROR]
+
+def log_setOutputScreen(fd, level):
+ setOutputScreen(fd, enumList[level])
+
+def log_setOutputFile(filename, level):
+ setOutputFile(six.b(filename), enumList[level]) \ No newline at end of file
diff --git a/python/astra/matlab.py b/python/astra/matlab.py
new file mode 100644
index 0000000..83b345d
--- /dev/null
+++ b/python/astra/matlab.py
@@ -0,0 +1,112 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+"""This module implements a MATLAB-like interface to the ASTRA Toolbox.
+
+Note that all functions are called with a :class:`string` as the first
+argument, specifying the operation to perform. This un-pythonic way
+is used to make transitioning from MATLAB code to Python code easier, as
+the MATLAB interface uses the same type of method calling.
+
+After an initial ``import astra``, these functions can be accessed in the
+``astra.m`` module.
+
+"""
+
+from . import astra_c
+from . import data2d_c
+from . import data3d_c
+from . import projector_c
+from . import algorithm_c
+from . import matrix_c
+import numpy as np
+
+
+def astra(command, *args):
+ """MATLAB-like interface to the :mod:`astra.astra` module
+
+ For example:
+
+ ``astra.m.astra('use_cuda')`` -- Check if CUDA is enabled.
+
+ """
+ return getattr(astra_c, command)(*args)
+
+
+def data2d(command, *args):
+ """MATLAB-like interface to the :mod:`astra.data2d` module
+
+ For example:
+
+ ``astra.m.data2d('create',type,geometry,data)`` -- Create a 2D object.
+
+ """
+ return getattr(data2d_c, command)(*args)
+
+
+def data3d(command, *args):
+ """MATLAB-like interface to the :mod:`astra.data3d` module
+
+ For example:
+
+ ``astra.m.data3d('get',i)`` -- Get 3D object data.
+
+ """
+ return getattr(data3d_c, command)(*args)
+
+
+def projector(command, *args):
+ """MATLAB-like interface to the :mod:`astra.projector` module
+
+ For example:
+
+ ``astra.m.projector('volume_geometry',i)`` -- Get volume geometry.
+
+ """
+ return getattr(projector_c, command)(*args)
+
+
+def matrix(command, *args):
+ """MATLAB-like interface to the :mod:`astra.matrix` module
+
+ For example:
+
+ ``astra.m.matrix('delete',i)`` -- Delete a matrix.
+
+ """
+ return getattr(matrix_c, command)(*args)
+
+
+def algorithm(command, *args):
+ """MATLAB-like interface to the :mod:`astra.algorithm` module
+
+ For example:
+
+ ``astra.m.algorithm('run',i,1000)`` -- Run an algorithm with 1000 iterations.
+
+ """
+ if command == 'iterate':
+ command = 'run'
+ return getattr(algorithm_c, command)(*args)
diff --git a/python/astra/matrix.py b/python/astra/matrix.py
new file mode 100644
index 0000000..27e4823
--- /dev/null
+++ b/python/astra/matrix.py
@@ -0,0 +1,86 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from . import matrix_c as m
+
+def delete(ids):
+ """Delete a matrix object.
+
+ :param ids: ID or list of ID's to delete.
+ :type ids: :class:`int` or :class:`list`
+
+ """
+ return m.delete(ids)
+
+def clear():
+ """Clear all matrix objects."""
+ return m.clear()
+
+def create(data):
+ """Create matrix object with data.
+
+ :param data: Data to fill the created object with.
+ :type data: :class:`scipy.sparse.csr_matrix`
+ :returns: :class:`int` -- the ID of the constructed object.
+
+ """
+ return m.create(data)
+
+
+def store(i,data):
+ """Fill existing matrix object with data.
+
+ :param i: ID of object to fill.
+ :type i: :class:`int`
+ :param data: Data to fill the object with.
+ :type data: :class:`scipy.sparse.csr_matrix`
+
+ """
+ return m.store(i,data)
+
+def get_size(i):
+ """Get matrix dimensions.
+
+ :param i: ID of object.
+ :type i: :class:`int`
+ :returns: :class:`tuple` -- matrix dimensions.
+ """
+ return m.get_size(i)
+
+def get(i):
+ """Get a matrix object.
+
+ :param i: ID of object to get.
+ :type i: :class:`int`
+ :returns: :class:`scipy.sparse.csr_matrix` -- The object data.
+
+ """
+ return m.get(i)
+
+def info():
+ """Print info on matrix objects in memory."""
+ return m.info()
+
+
diff --git a/python/astra/matrix_c.pyx b/python/astra/matrix_c.pyx
new file mode 100644
index 0000000..b0d8bc4
--- /dev/null
+++ b/python/astra/matrix_c.pyx
@@ -0,0 +1,116 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+# distutils: language = c++
+# distutils: libraries = astra
+
+import six
+from six.moves import range
+import numpy as np
+import scipy.sparse as ss
+
+from libcpp cimport bool
+
+cimport PyMatrixManager
+from .PyMatrixManager cimport CMatrixManager
+from .PyIncludes cimport *
+from .utils import wrap_from_bytes
+
+cdef CMatrixManager * manM = <CMatrixManager * >PyMatrixManager.getSingletonPtr()
+
+
+def delete(ids):
+ try:
+ for i in ids:
+ manM.remove(i)
+ except TypeError:
+ manM.remove(ids)
+
+def clear():
+ manM.clear()
+
+cdef int csr_matrix_to_astra(data,CSparseMatrix *mat) except -1:
+ if isinstance(data,ss.csr_matrix):
+ csrD = data
+ else:
+ csrD = data.tocsr()
+ if not mat.isInitialized():
+ raise Exception("Couldn't initialize data object.")
+ if csrD.nnz > mat.m_lSize or csrD.shape[0] > mat.m_iHeight:
+ raise Exception("Matrix too large to store in this object.")
+ for i in range(len(csrD.indptr)):
+ mat.m_plRowStarts[i] = csrD.indptr[i]
+ for i in range(csrD.nnz):
+ mat.m_piColIndices[i] = csrD.indices[i]
+ mat.m_pfValues[i] = csrD.data[i]
+
+cdef astra_to_csr_matrix(CSparseMatrix *mat):
+ indptr = np.zeros(mat.m_iHeight+1,dtype=np.int)
+ indices = np.zeros(mat.m_plRowStarts[mat.m_iHeight],dtype=np.int)
+ data = np.zeros(mat.m_plRowStarts[mat.m_iHeight])
+ for i in range(mat.m_iHeight+1):
+ indptr[i] = mat.m_plRowStarts[i]
+ for i in range(mat.m_plRowStarts[mat.m_iHeight]):
+ indices[i] = mat.m_piColIndices[i]
+ data[i] = mat.m_pfValues[i]
+ return ss.csr_matrix((data,indices,indptr),shape=(mat.m_iHeight,mat.m_iWidth))
+
+def create(data):
+ cdef CSparseMatrix* pMatrix
+ pMatrix = new CSparseMatrix(data.shape[0], data.shape[1], data.nnz)
+ if not pMatrix.isInitialized():
+ del pMatrix
+ raise Exception("Couldn't initialize data object.")
+ try:
+ csr_matrix_to_astra(data,pMatrix)
+ except:
+ del pMatrix
+ raise Exception("Failed to create data object.")
+
+ return manM.store(pMatrix)
+
+cdef CSparseMatrix * getObject(i) except NULL:
+ cdef CSparseMatrix * pDataObject = manM.get(i)
+ if pDataObject == NULL:
+ raise Exception("Data object not found")
+ if not pDataObject.isInitialized():
+ raise Exception("Data object not initialized properly.")
+ return pDataObject
+
+
+def store(i,data):
+ cdef CSparseMatrix * pDataObject = getObject(i)
+ csr_matrix_to_astra(data,pDataObject)
+
+def get_size(i):
+ cdef CSparseMatrix * pDataObject = getObject(i)
+ return (pDataObject.m_iHeight,pDataObject.m_iWidth)
+
+def get(i):
+ cdef CSparseMatrix * pDataObject = getObject(i)
+ return astra_to_csr_matrix(pDataObject)
+
+def info():
+ six.print_(wrap_from_bytes(manM.info()))
diff --git a/python/astra/projector.py b/python/astra/projector.py
new file mode 100644
index 0000000..e370e5a
--- /dev/null
+++ b/python/astra/projector.py
@@ -0,0 +1,110 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from . import projector_c as p
+
+def create(config):
+ """Create projector object.
+
+ :param config: Projector options.
+ :type config: :class:`dict`
+ :returns: :class:`int` -- the ID of the constructed object.
+
+ """
+ return p.create(config)
+
+
+def delete(ids):
+ """Delete a projector object.
+
+ :param ids: ID or list of ID's to delete.
+ :type ids: :class:`int` or :class:`list`
+
+ """
+ return p.delete(ids)
+
+
+def clear():
+ """Clear all projector objects."""
+ return p.clear()
+
+
+def info():
+ """Print info on projector objects in memory."""
+ return p.info()
+
+def projection_geometry(i):
+ """Get projection geometry of a projector.
+
+ :param i: ID of projector.
+ :type i: :class:`int`
+ :returns: :class:`dict` -- projection geometry
+
+ """
+ return p.projection_geometry(i)
+
+
+def volume_geometry(i):
+ """Get volume geometry of a projector.
+
+ :param i: ID of projector.
+ :type i: :class:`int`
+ :returns: :class:`dict` -- volume geometry
+
+ """
+ return p.volume_geometry(i)
+
+
+def weights_single_ray(i, projection_index, detector_index):
+ return p.weights_single_ray(i, projection_index, detector_index)
+
+
+def weights_projection(i, projection_index):
+ return p.weights_projection(i, projection_index)
+
+
+def splat(i, row, col):
+ return p.splat(i, row, col)
+
+def is_cuda(i):
+ """Check whether a projector is a CUDA projector.
+
+ :param i: ID of projector.
+ :type i: :class:`int`
+ :returns: :class:`bool` -- True if the projector is a CUDA projector.
+
+ """
+ return p.is_cuda(i)
+
+
+def matrix(i):
+ """Get sparse matrix of a projector.
+
+ :param i: ID of projector.
+ :type i: :class:`int`
+ :returns: :class:`int` -- ID of sparse matrix.
+
+ """
+ return p.matrix(i)
diff --git a/python/astra/projector3d.py b/python/astra/projector3d.py
new file mode 100644
index 0000000..d1086b9
--- /dev/null
+++ b/python/astra/projector3d.py
@@ -0,0 +1,100 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from . import projector3d_c as p
+
+def create(config):
+ """Create projector object.
+
+ :param config: Projector options.
+ :type config: :class:`dict`
+ :returns: :class:`int` -- the ID of the constructed object.
+
+ """
+ return p.create(config)
+
+
+def delete(ids):
+ """Delete a projector object.
+
+ :param ids: ID or list of ID's to delete.
+ :type ids: :class:`int` or :class:`list`
+
+ """
+ return p.delete(ids)
+
+
+def clear():
+ """Clear all projector objects."""
+ return p.clear()
+
+
+def info():
+ """Print info on projector objects in memory."""
+ return p.info()
+
+def projection_geometry(i):
+ """Get projection geometry of a projector.
+
+ :param i: ID of projector.
+ :type i: :class:`int`
+ :returns: :class:`dict` -- projection geometry
+
+ """
+ return p.projection_geometry(i)
+
+
+def volume_geometry(i):
+ """Get volume geometry of a projector.
+
+ :param i: ID of projector.
+ :type i: :class:`int`
+ :returns: :class:`dict` -- volume geometry
+
+ """
+ return p.volume_geometry(i)
+
+
+def weights_single_ray(i, projection_index, detector_index):
+ return p.weights_single_ray(i, projection_index, detector_index)
+
+
+def weights_projection(i, projection_index):
+ return p.weights_projection(i, projection_index)
+
+
+def splat(i, row, col):
+ return p.splat(i, row, col)
+
+
+def is_cuda(i):
+ """Check whether a projector is a CUDA projector.
+
+ :param i: ID of projector.
+ :type i: :class:`int`
+ :returns: :class:`bool` -- True if the projector is a CUDA projector.
+
+ """
+ return p.is_cuda(i)
diff --git a/python/astra/projector3d_c.pyx b/python/astra/projector3d_c.pyx
new file mode 100644
index 0000000..8b978d7
--- /dev/null
+++ b/python/astra/projector3d_c.pyx
@@ -0,0 +1,119 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+# distutils: language = c++
+# distutils: libraries = astra
+
+import six
+from .PyIncludes cimport *
+
+cimport utils
+from .utils import wrap_from_bytes
+
+cimport PyProjector3DFactory
+from .PyProjector3DFactory cimport CProjector3DFactory
+
+cimport PyProjector3DManager
+from .PyProjector3DManager cimport CProjector3DManager
+
+cimport PyXMLDocument
+from .PyXMLDocument cimport XMLDocument
+
+cdef CProjector3DManager * manProj = <CProjector3DManager * >PyProjector3DManager.getSingletonPtr()
+
+include "config.pxi"
+
+IF HAVE_CUDA:
+ cdef extern from *:
+ CCudaProjector3D* dynamic_cast_cuda_projector "dynamic_cast<astra::CCudaProjector3D*>" (CProjector3D*)
+
+
+def create(config):
+ cdef Config * cfg = utils.dictToConfig(six.b('Projector3D'), config)
+ cdef CProjector3D * proj
+ proj = PyProjector3DFactory.getSingletonPtr().create(cfg[0])
+ if proj == NULL:
+ del cfg
+ raise Exception("Error creating Projector3D.")
+ del cfg
+ return manProj.store(proj)
+
+
+def delete(ids):
+ try:
+ for i in ids:
+ manProj.remove(i)
+ except TypeError:
+ manProj.remove(ids)
+
+
+def clear():
+ manProj.clear()
+
+
+def info():
+ six.print_(wrap_from_bytes(manProj.info()))
+
+cdef CProjector3D * getObject(i) except NULL:
+ cdef CProjector3D * proj = manProj.get(i)
+ if proj == NULL:
+ raise Exception("Projector not initialized.")
+ if not proj.isInitialized():
+ raise Exception("Projector not initialized.")
+ return proj
+
+
+def projection_geometry(i):
+ cdef CProjector3D * proj = getObject(i)
+ return utils.configToDict(proj.getProjectionGeometry().getConfiguration())
+
+
+def volume_geometry(i):
+ cdef CProjector3D * proj = getObject(i)
+ return utils.configToDict(proj.getVolumeGeometry().getConfiguration())
+
+
+def weights_single_ray(i, projection_index, detector_index):
+ raise Exception("Not yet implemented")
+
+
+def weights_projection(i, projection_index):
+ raise Exception("Not yet implemented")
+
+
+def splat(i, row, col):
+ raise Exception("Not yet implemented")
+
+def is_cuda(i):
+ cdef CProjector3D * proj = getObject(i)
+ IF HAVE_CUDA==True:
+ cdef CCudaProjector3D * cudaproj = NULL
+ cudaproj = dynamic_cast_cuda_projector(proj)
+ if cudaproj==NULL:
+ return False
+ else:
+ return True
+ ELSE:
+ return False
diff --git a/python/astra/projector_c.pyx b/python/astra/projector_c.pyx
new file mode 100644
index 0000000..9aa868e
--- /dev/null
+++ b/python/astra/projector_c.pyx
@@ -0,0 +1,134 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+# distutils: language = c++
+# distutils: libraries = astra
+
+import six
+from .PyIncludes cimport *
+
+cimport utils
+from .utils import wrap_from_bytes
+
+cimport PyProjector2DFactory
+from .PyProjector2DFactory cimport CProjector2DFactory
+
+cimport PyProjector2DManager
+from .PyProjector2DManager cimport CProjector2DManager
+
+cimport PyXMLDocument
+from .PyXMLDocument cimport XMLDocument
+
+cimport PyMatrixManager
+from .PyMatrixManager cimport CMatrixManager
+
+cdef CProjector2DManager * manProj = <CProjector2DManager * >PyProjector2DManager.getSingletonPtr()
+cdef CMatrixManager * manM = <CMatrixManager * >PyMatrixManager.getSingletonPtr()
+
+include "config.pxi"
+
+IF HAVE_CUDA:
+ cdef extern from *:
+ CCudaProjector2D* dynamic_cast_cuda_projector "dynamic_cast<astra::CCudaProjector2D*>" (CProjector2D*)
+
+
+def create(config):
+ cdef Config * cfg = utils.dictToConfig(six.b('Projector2D'), config)
+ cdef CProjector2D * proj
+ proj = PyProjector2DFactory.getSingletonPtr().create(cfg[0])
+ if proj == NULL:
+ del cfg
+ raise Exception("Error creating projector.")
+ del cfg
+ return manProj.store(proj)
+
+
+def delete(ids):
+ try:
+ for i in ids:
+ manProj.remove(i)
+ except TypeError:
+ manProj.remove(ids)
+
+
+def clear():
+ manProj.clear()
+
+
+def info():
+ six.print_(wrap_from_bytes(manProj.info()))
+
+cdef CProjector2D * getObject(i) except NULL:
+ cdef CProjector2D * proj = manProj.get(i)
+ if proj == NULL:
+ raise Exception("Projector not initialized.")
+ if not proj.isInitialized():
+ raise Exception("Projector not initialized.")
+ return proj
+
+
+def projection_geometry(i):
+ cdef CProjector2D * proj = getObject(i)
+ return utils.configToDict(proj.getProjectionGeometry().getConfiguration())
+
+
+def volume_geometry(i):
+ cdef CProjector2D * proj = getObject(i)
+ return utils.configToDict(proj.getVolumeGeometry().getConfiguration())
+
+
+def weights_single_ray(i, projection_index, detector_index):
+ raise Exception("Not yet implemented")
+
+
+def weights_projection(i, projection_index):
+ raise Exception("Not yet implemented")
+
+
+def splat(i, row, col):
+ raise Exception("Not yet implemented")
+
+def is_cuda(i):
+ cdef CProjector2D * proj = getObject(i)
+ IF HAVE_CUDA==True:
+ cdef CCudaProjector2D * cudaproj = NULL
+ cudaproj = dynamic_cast_cuda_projector(proj)
+ if cudaproj==NULL:
+ return False
+ else:
+ return True
+ ELSE:
+ return False
+
+def matrix(i):
+ cdef CProjector2D * proj = getObject(i)
+ cdef CSparseMatrix * mat = proj.getMatrix()
+ if mat == NULL:
+ del mat
+ raise Exception("Data object not found")
+ if not mat.isInitialized():
+ del mat
+ raise Exception("Data object not initialized properly.")
+ return manM.store(mat)
diff --git a/python/astra/utils.pxd b/python/astra/utils.pxd
new file mode 100644
index 0000000..ca84836
--- /dev/null
+++ b/python/astra/utils.pxd
@@ -0,0 +1,35 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+from libcpp.string cimport string
+
+cimport PyXMLDocument
+from .PyXMLDocument cimport XMLDocument
+from .PyXMLDocument cimport XMLNode
+
+from .PyIncludes cimport *
+
+cdef configToDict(Config *)
+cdef Config * dictToConfig(string rootname, dc)
diff --git a/python/astra/utils.pyx b/python/astra/utils.pyx
new file mode 100644
index 0000000..0439f1b
--- /dev/null
+++ b/python/astra/utils.pyx
@@ -0,0 +1,236 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+# distutils: language = c++
+# distutils: libraries = astra
+
+import numpy as np
+import six
+from libcpp.string cimport string
+from libcpp.list cimport list
+from libcpp.vector cimport vector
+from cython.operator cimport dereference as deref, preincrement as inc
+from cpython.version cimport PY_MAJOR_VERSION
+
+cimport PyXMLDocument
+from .PyXMLDocument cimport XMLDocument
+from .PyXMLDocument cimport XMLNode
+from .PyIncludes cimport *
+
+
+cdef Config * dictToConfig(string rootname, dc):
+ cdef Config * cfg = new Config()
+ cfg.initialize(rootname)
+ try:
+ readDict(cfg.self, dc)
+ except Exception as e:
+ del cfg
+ six.print_(e.strerror)
+ return NULL
+ return cfg
+
+def convert_item(item):
+ if isinstance(item, six.string_types):
+ return item.encode('ascii')
+
+ if type(item) is not dict:
+ return item
+
+ out_dict = {}
+ for k in item:
+ out_dict[convert_item(k)] = convert_item(item[k])
+ return out_dict
+
+
+def wrap_to_bytes(value):
+ if isinstance(value, six.binary_type):
+ return value
+ s = str(value)
+ if PY_MAJOR_VERSION == 3:
+ s = s.encode('ascii')
+ return s
+
+
+def wrap_from_bytes(value):
+ s = value
+ if PY_MAJOR_VERSION == 3:
+ s = s.decode('ascii')
+ return s
+
+
+cdef void readDict(XMLNode * root, _dc):
+ cdef XMLNode * listbase
+ cdef XMLNode * itm
+ cdef int i
+ cdef int j
+
+ dc = convert_item(_dc)
+ for item in dc:
+ val = dc[item]
+ if isinstance(val, np.ndarray):
+ if val.size == 0:
+ break
+ listbase = root.addChildNode(item)
+ listbase.addAttribute(< string > six.b('listsize'), < float32 > val.size)
+ index = 0
+ if val.ndim == 2:
+ for i in range(val.shape[0]):
+ for j in range(val.shape[1]):
+ itm = listbase.addChildNode(six.b('ListItem'))
+ itm.addAttribute(< string > six.b('index'), < float32 > index)
+ itm.addAttribute( < string > six.b('value'), < float32 > val[i, j])
+ index += 1
+ del itm
+ elif val.ndim == 1:
+ for i in range(val.shape[0]):
+ itm = listbase.addChildNode(six.b('ListItem'))
+ itm.addAttribute(< string > six.b('index'), < float32 > index)
+ itm.addAttribute(< string > six.b('value'), < float32 > val[i])
+ index += 1
+ del itm
+ else:
+ raise Exception("Only 1 or 2 dimensions are allowed")
+ del listbase
+ elif isinstance(val, dict):
+ if item == six.b('option') or item == six.b('options') or item == six.b('Option') or item == six.b('Options'):
+ readOptions(root, val)
+ else:
+ itm = root.addChildNode(item)
+ readDict(itm, val)
+ del itm
+ else:
+ if item == six.b('type'):
+ root.addAttribute(< string > six.b('type'), <string> wrap_to_bytes(val))
+ else:
+ itm = root.addChildNode(item, wrap_to_bytes(val))
+ del itm
+
+cdef void readOptions(XMLNode * node, dc):
+ cdef XMLNode * listbase
+ cdef XMLNode * itm
+ cdef int i
+ cdef int j
+ for item in dc:
+ val = dc[item]
+ if node.hasOption(item):
+ raise Exception('Duplicate Option: %s' % item)
+ if isinstance(val, np.ndarray):
+ if val.size == 0:
+ break
+ listbase = node.addChildNode(six.b('Option'))
+ listbase.addAttribute(< string > six.b('key'), < string > item)
+ listbase.addAttribute(< string > six.b('listsize'), < float32 > val.size)
+ index = 0
+ if val.ndim == 2:
+ for i in range(val.shape[0]):
+ for j in range(val.shape[1]):
+ itm = listbase.addChildNode(six.b('ListItem'))
+ itm.addAttribute(< string > six.b('index'), < float32 > index)
+ itm.addAttribute( < string > six.b('value'), < float32 > val[i, j])
+ index += 1
+ del itm
+ elif val.ndim == 1:
+ for i in range(val.shape[0]):
+ itm = listbase.addChildNode(six.b('ListItem'))
+ itm.addAttribute(< string > six.b('index'), < float32 > index)
+ itm.addAttribute(< string > six.b('value'), < float32 > val[i])
+ index += 1
+ del itm
+ else:
+ raise Exception("Only 1 or 2 dimensions are allowed")
+ del listbase
+ else:
+ node.addOption(item, wrap_to_bytes(val))
+
+cdef configToDict(Config *cfg):
+ return XMLNode2dict(cfg.self)
+
+def castString3(input):
+ return input.decode('utf-8')
+
+def castString2(input):
+ return input
+
+if six.PY3:
+ castString = castString3
+else:
+ castString = castString2
+
+def stringToPythonValue(inputIn):
+ input = castString(inputIn)
+ # matrix
+ if ';' in input:
+ row_strings = input.split(';')
+ col_strings = row_strings[0].split(',')
+ nRows = len(row_strings)
+ nCols = len(col_strings)
+
+ out = np.empty((nRows,nCols))
+ for ridx, row in enumerate(row_strings):
+ col_strings = row.split(',')
+ for cidx, col in enumerate(col_strings):
+ out[ridx,cidx] = float(col)
+ return out
+
+ # vector
+ if ',' in input:
+ items = input.split(',')
+ out = np.empty(len(items))
+ for idx,item in enumerate(items):
+ out[idx] = float(item)
+ return out
+
+ try:
+ # integer
+ return int(input)
+ except ValueError:
+ try:
+ #float
+ return float(input)
+ except ValueError:
+ # string
+ return str(input)
+
+
+cdef XMLNode2dict(XMLNode * node):
+ cdef XMLNode * subnode
+ cdef list[XMLNode * ] nodes
+ cdef list[XMLNode * ].iterator it
+ dct = {}
+ opts = {}
+ if node.hasAttribute(six.b('type')):
+ dct['type'] = castString(node.getAttribute(six.b('type')))
+ nodes = node.getNodes()
+ it = nodes.begin()
+ while it != nodes.end():
+ subnode = deref(it)
+ if castString(subnode.getName())=="Option":
+ opts[castString(subnode.getAttribute('key'))] = stringToPythonValue(subnode.getAttribute('value'))
+ else:
+ dct[castString(subnode.getName())] = stringToPythonValue(subnode.getContent())
+ del subnode
+ inc(it)
+ if len(opts)>0: dct['options'] = opts
+ return dct
diff --git a/python/builder.py b/python/builder.py
new file mode 100644
index 0000000..cfdb7d1
--- /dev/null
+++ b/python/builder.py
@@ -0,0 +1,82 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+import sys
+import os
+import numpy as np
+
+from distutils.version import LooseVersion
+from distutils.core import setup
+from distutils.extension import Extension
+
+from Cython.Distutils import build_ext
+from Cython.Build import cythonize
+import Cython
+if LooseVersion(Cython.__version__)<LooseVersion('0.13'): raise ImportError("Cython version should be at least 0.13")
+usecuda=False
+try:
+ if os.environ['CPPFLAGS'].find('-DASTRA_CUDA')!=-1:
+ usecuda=True
+except KeyError:
+ pass
+
+cfgToWrite = 'DEF HAVE_CUDA=' + str(usecuda) + "\n"
+cfgHasToBeUpdated = True
+try:
+ cfg = open('astra/config.pxi','r')
+ cfgIn = cfg.read()
+ cfg.close()
+ if cfgIn==cfgToWrite:
+ cfgHasToBeUpdated = False
+except IOError:
+ pass
+
+if cfgHasToBeUpdated:
+ cfg = open('astra/config.pxi','w')
+ cfg.write(cfgToWrite)
+ cfg.close()
+
+cmdclass = { }
+ext_modules = [ ]
+
+ext_modules = cythonize("astra/*.pyx", language_level=2)
+cmdclass = { 'build_ext': build_ext }
+
+setup (name = 'PyASTRAToolbox',
+ version = '1.6',
+ description = 'Python interface to the ASTRA-Toolbox',
+ author='D.M. Pelt',
+ author_email='D.M.Pelt@cwi.nl',
+ url='http://dmpelt.github.io/pyastratoolbox/',
+ #ext_package='astra',
+ #ext_modules = cythonize(Extension("astra/*.pyx",extra_compile_args=extra_compile_args,extra_linker_args=extra_compile_args)),
+ license='GPLv3',
+ ext_modules = ext_modules,
+ include_dirs=[np.get_include()],
+ cmdclass = cmdclass,
+ #ext_modules = [Extension("astra","astra/astra.pyx")],
+ packages=['astra'],
+ requires=["numpy"],
+ )
diff --git a/python/doc b/python/doc
new file mode 120000
index 0000000..3705b55
--- /dev/null
+++ b/python/doc
@@ -0,0 +1 @@
+docSRC/_build/html \ No newline at end of file
diff --git a/python/docSRC/ASTRAProjector.rst b/python/docSRC/ASTRAProjector.rst
new file mode 100644
index 0000000..1c267e3
--- /dev/null
+++ b/python/docSRC/ASTRAProjector.rst
@@ -0,0 +1,8 @@
+Helper class: the :mod:`ASTRAProjector` module
+==============================================
+
+.. automodule:: astra.ASTRAProjector
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/Makefile b/python/docSRC/Makefile
new file mode 100644
index 0000000..a005bab
--- /dev/null
+++ b/python/docSRC/Makefile
@@ -0,0 +1,153 @@
+# Makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line.
+SPHINXOPTS =
+SPHINXBUILD = sphinx-build
+PAPER =
+BUILDDIR = _build
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+# Internal variables.
+PAPEROPT_a4 = -D latex_paper_size=a4
+PAPEROPT_letter = -D latex_paper_size=letter
+ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
+# the i18n builder cannot share the environment and doctrees with the others
+I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
+
+.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext
+
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+ $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub
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+ $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
+ @echo "Running LaTeX files through pdflatex..."
+ $(MAKE) -C $(BUILDDIR)/latex all-pdf
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+man:
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+ @echo
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+ @echo "Running Texinfo files through makeinfo..."
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+ @echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."
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+ @echo
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+
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+ @echo
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+ "or in $(BUILDDIR)/linkcheck/output.txt."
+
+doctest:
+ $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
+ @echo "Testing of doctests in the sources finished, look at the " \
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+# Sphinx build info version 1
+# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 613726d7ead289eb5bc59a5d50e806e0
+tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/python/docSRC/_build/html/ASTRAProjector.html b/python/docSRC/_build/html/ASTRAProjector.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+
+ <div class="section" id="module-astra.ASTRAProjector">
+<span id="helper-class-the-astraprojector-module"></span><h1>Helper class: the <tt class="xref py py-mod docutils literal"><span class="pre">ASTRAProjector</span></tt> module<a class="headerlink" href="#module-astra.ASTRAProjector" title="Permalink to this headline">¶</a></h1>
+<dl class="class">
+<dt id="astra.ASTRAProjector.ASTRAProjector2D">
+<em class="property">class </em><tt class="descclassname">astra.ASTRAProjector.</tt><tt class="descname">ASTRAProjector2D</tt><big>(</big><em>proj_geom</em>, <em>vol_geom</em>, <em>proj_type</em>, <em>useCUDA=False</em><big>)</big><a class="reference internal" href="_modules/astra/ASTRAProjector.html#ASTRAProjector2D"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.ASTRAProjector.ASTRAProjector2D" title="Permalink to this definition">¶</a></dt>
+<dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">builtins.object</span></tt></p>
+<p>Helps with various common ASTRA Toolbox 2D operations.</p>
+<p>This class can perform several often used toolbox operations, such as:</p>
+<ul class="simple">
+<li>Forward projecting</li>
+<li>Back projecting</li>
+<li>Reconstructing</li>
+</ul>
+<p>Note that this class has a some computational overhead, because it
+copies a lot of data. If you use many repeated operations, directly
+using the PyAstraToolbox methods directly is faster.</p>
+<p>You can use this class as an abstracted weight matrix <span class="math">\(W\)</span>: multiplying an instance
+<tt class="docutils literal"><span class="pre">proj</span></tt> of this class by an image results in a forward projection of the image, and multiplying
+<tt class="docutils literal"><span class="pre">proj.T</span></tt> by a sinogram results in a backprojection of the sinogram:</p>
+<div class="highlight-python"><div class="highlight"><pre><span class="n">proj</span> <span class="o">=</span> <span class="n">ASTRAProjector2D</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>
+<span class="n">fp</span> <span class="o">=</span> <span class="n">proj</span><span class="o">*</span><span class="n">image</span>
+<span class="n">bp</span> <span class="o">=</span> <span class="n">proj</span><span class="o">.</span><span class="n">T</span><span class="o">*</span><span class="n">sinogram</span>
+</pre></div>
+</div>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>proj_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; The projection geometry.</li>
+<li><strong>vol_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; The volume geometry.</li>
+<li><strong>proj_type</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) &#8211; Projector type, such as <tt class="docutils literal"><span class="pre">'line'</span></tt>, <tt class="docutils literal"><span class="pre">'linear'</span></tt>, ...</li>
+<li><strong>useCUDA</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) &#8211; If <tt class="docutils literal"><span class="pre">True</span></tt>, use CUDA for calculations, when possible.</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+<dl class="method">
+<dt id="astra.ASTRAProjector.ASTRAProjector2D.backProject">
+<tt class="descname">backProject</tt><big>(</big><em>data</em><big>)</big><a class="reference internal" href="_modules/astra/ASTRAProjector.html#ASTRAProjector2D.backProject"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.ASTRAProjector.ASTRAProjector2D.backProject" title="Permalink to this definition">¶</a></dt>
+<dd><p>Backproject a sinogram.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; The sinogram data or ID.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> &#8211; The backprojection.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="method">
+<dt id="astra.ASTRAProjector.ASTRAProjector2D.forwardProject">
+<tt class="descname">forwardProject</tt><big>(</big><em>data</em><big>)</big><a class="reference internal" href="_modules/astra/ASTRAProjector.html#ASTRAProjector2D.forwardProject"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.ASTRAProjector.ASTRAProjector2D.forwardProject" title="Permalink to this definition">¶</a></dt>
+<dd><p>Forward project an image.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; The image data or ID.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> &#8211; The forward projection.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="method">
+<dt id="astra.ASTRAProjector.ASTRAProjector2D.reconstruct">
+<tt class="descname">reconstruct</tt><big>(</big><em>data</em>, <em>method</em>, <em>**kwargs</em><big>)</big><a class="reference internal" href="_modules/astra/ASTRAProjector.html#ASTRAProjector2D.reconstruct"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.ASTRAProjector.ASTRAProjector2D.reconstruct" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reconstruct an image from a sinogram.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; The sinogram data or ID.</li>
+<li><strong>method</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) &#8211; Name of the reconstruction algorithm.</li>
+<li><strong>kwargs</strong> &#8211; Additional named parameters to pass to <a class="reference internal" href="creators.html#astra.creators.create_reconstruction" title="astra.creators.create_reconstruction"><tt class="xref py py-func docutils literal"><span class="pre">astra.creators.create_reconstruction()</span></tt></a>.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> &#8211; The reconstruction.</p>
+</td>
+</tr>
+</tbody>
+</table>
+<p>Example of a SIRT reconstruction using CUDA:</p>
+<div class="highlight-python"><div class="highlight"><pre><span class="n">proj</span> <span class="o">=</span> <span class="n">ASTRAProjector2D</span><span class="p">(</span><span class="o">...</span><span class="p">)</span>
+<span class="n">rec</span> <span class="o">=</span> <span class="n">proj</span><span class="o">.</span><span class="n">reconstruct</span><span class="p">(</span><span class="n">sinogram</span><span class="p">,</span><span class="s">&#39;SIRT_CUDA&#39;</span><span class="p">,</span><span class="n">iterations</span><span class="o">=</span><span class="mi">1000</span><span class="p">)</span>
+</pre></div>
+</div>
+</dd></dl>
+
+</dd></dl>
+
+<dl class="class">
+<dt id="astra.ASTRAProjector.ASTRAProjector2DTranspose">
+<em class="property">class </em><tt class="descclassname">astra.ASTRAProjector.</tt><tt class="descname">ASTRAProjector2DTranspose</tt><big>(</big><em>parentProj</em><big>)</big><a class="reference internal" href="_modules/astra/ASTRAProjector.html#ASTRAProjector2DTranspose"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.ASTRAProjector.ASTRAProjector2DTranspose" title="Permalink to this definition">¶</a></dt>
+<dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">builtins.object</span></tt></p>
+<p>Implements the <tt class="docutils literal"><span class="pre">proj.T</span></tt> functionality.</p>
+<p>Do not use directly, since it can be accessed as member <tt class="docutils literal"><span class="pre">.T</span></tt> of
+an <a class="reference internal" href="#astra.ASTRAProjector.ASTRAProjector2D" title="astra.ASTRAProjector.ASTRAProjector2D"><tt class="xref py py-class docutils literal"><span class="pre">ASTRAProjector2D</span></tt></a> object.</p>
+</dd></dl>
+
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+ <h1>Source code for astra.ASTRAProjector</h1><div class="highlight"><pre>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="c">#Copyright 2013 Centrum Wiskunde &amp; Informatica, Amsterdam</span>
+<span class="c">#</span>
+<span class="c">#Author: Daniel M. Pelt</span>
+<span class="c">#Contact: D.M.Pelt@cwi.nl</span>
+<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span>
+<span class="c">#</span>
+<span class="c">#</span>
+<span class="c">#This file is part of the Python interface to the</span>
+<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox (&quot;ASTRA Toolbox&quot;).</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span>
+<span class="c">#it under the terms of the GNU General Public License as published by</span>
+<span class="c">#the Free Software Foundation, either version 3 of the License, or</span>
+<span class="c">#(at your option) any later version.</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span>
+<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
+<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
+<span class="c">#GNU General Public License for more details.</span>
+<span class="c">#</span>
+<span class="c">#You should have received a copy of the GNU General Public License</span>
+<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see &lt;http://www.gnu.org/licenses/&gt;.</span>
+<span class="c">#</span>
+<span class="c">#-----------------------------------------------------------------------</span>
+
+<span class="kn">import</span> <span class="nn">math</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">creators</span> <span class="k">as</span> <span class="n">ac</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data2d</span>
+
+
+<div class="viewcode-block" id="ASTRAProjector2DTranspose"><a class="viewcode-back" href="../../ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2DTranspose">[docs]</a><span class="k">class</span> <span class="nc">ASTRAProjector2DTranspose</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Implements the ``proj.T`` functionality.</span>
+
+<span class="sd"> Do not use directly, since it can be accessed as member ``.T`` of</span>
+<span class="sd"> an :class:`ASTRAProjector2D` object.</span>
+
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">parentProj</span><span class="p">):</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">parentProj</span> <span class="o">=</span> <span class="n">parentProj</span>
+
+ <span class="k">def</span> <span class="nf">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">):</span>
+ <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">parentProj</span><span class="o">.</span><span class="n">backProject</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="ASTRAProjector2D"><a class="viewcode-back" href="../../ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D">[docs]</a><span class="k">class</span> <span class="nc">ASTRAProjector2D</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Helps with various common ASTRA Toolbox 2D operations.</span>
+
+<span class="sd"> This class can perform several often used toolbox operations, such as:</span>
+
+<span class="sd"> * Forward projecting</span>
+<span class="sd"> * Back projecting</span>
+<span class="sd"> * Reconstructing</span>
+
+<span class="sd"> Note that this class has a some computational overhead, because it</span>
+<span class="sd"> copies a lot of data. If you use many repeated operations, directly</span>
+<span class="sd"> using the PyAstraToolbox methods directly is faster.</span>
+
+<span class="sd"> You can use this class as an abstracted weight matrix :math:`W`: multiplying an instance</span>
+<span class="sd"> ``proj`` of this class by an image results in a forward projection of the image, and multiplying</span>
+<span class="sd"> ``proj.T`` by a sinogram results in a backprojection of the sinogram::</span>
+
+<span class="sd"> proj = ASTRAProjector2D(...)</span>
+<span class="sd"> fp = proj*image</span>
+<span class="sd"> bp = proj.T*sinogram</span>
+
+<span class="sd"> :param proj_geom: The projection geometry.</span>
+<span class="sd"> :type proj_geom: :class:`dict`</span>
+<span class="sd"> :param vol_geom: The volume geometry.</span>
+<span class="sd"> :type vol_geom: :class:`dict`</span>
+<span class="sd"> :param proj_type: Projector type, such as ``&#39;line&#39;``, ``&#39;linear&#39;``, ...</span>
+<span class="sd"> :type proj_type: :class:`string`</span>
+<span class="sd"> :param useCUDA: If ``True``, use CUDA for calculations, when possible.</span>
+<span class="sd"> :type useCUDA: :class:`bool`</span>
+<span class="sd"> &quot;&quot;&quot;</span>
+
+ <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="n">proj_type</span><span class="p">,</span> <span class="n">useCUDA</span><span class="o">=</span><span class="bp">False</span><span class="p">):</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">vol_geom</span> <span class="o">=</span> <span class="n">vol_geom</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">recSize</span> <span class="o">=</span> <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridColCount&#39;</span><span class="p">]</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">angles</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;ProjectionAngles&#39;</span><span class="p">]</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">nDet</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorCount&#39;</span><span class="p">]</span>
+ <span class="n">nexpow</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">pow</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="n">math</span><span class="o">.</span><span class="n">ceil</span><span class="p">(</span><span class="n">math</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">nDet</span><span class="p">,</span> <span class="mi">2</span><span class="p">))))</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">filterSize</span> <span class="o">=</span> <span class="n">nexpow</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">+</span> <span class="mi">1</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">nProj</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">angles</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">proj_geom</span> <span class="o">=</span> <span class="n">proj_geom</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">proj_id</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_projector</span><span class="p">(</span><span class="n">proj_type</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">)</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">useCUDA</span> <span class="o">=</span> <span class="n">useCUDA</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">=</span> <span class="n">ASTRAProjector2DTranspose</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
+
+<div class="viewcode-block" id="ASTRAProjector2D.backProject"><a class="viewcode-back" href="../../ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D.backProject">[docs]</a> <span class="k">def</span> <span class="nf">backProject</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Backproject a sinogram.</span>
+
+<span class="sd"> :param data: The sinogram data or ID.</span>
+<span class="sd"> :type data: :class:`numpy.ndarray` or :class:`int`</span>
+<span class="sd"> :returns: :class:`numpy.ndarray` -- The backprojection.</span>
+
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="n">vol_id</span><span class="p">,</span> <span class="n">vol</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_backprojection</span><span class="p">(</span>
+ <span class="n">data</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">proj_id</span><span class="p">,</span> <span class="n">useCUDA</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">useCUDA</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">)</span>
+ <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">vol_id</span><span class="p">)</span>
+ <span class="k">return</span> <span class="n">vol</span>
+</div>
+<div class="viewcode-block" id="ASTRAProjector2D.forwardProject"><a class="viewcode-back" href="../../ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D.forwardProject">[docs]</a> <span class="k">def</span> <span class="nf">forwardProject</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Forward project an image.</span>
+
+<span class="sd"> :param data: The image data or ID.</span>
+<span class="sd"> :type data: :class:`numpy.ndarray` or :class:`int`</span>
+<span class="sd"> :returns: :class:`numpy.ndarray` -- The forward projection.</span>
+
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="n">sin_id</span><span class="p">,</span> <span class="n">sino</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_sino</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">proj_id</span><span class="p">,</span> <span class="n">useCUDA</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">useCUDA</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">)</span>
+ <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">sin_id</span><span class="p">)</span>
+ <span class="k">return</span> <span class="n">sino</span>
+</div>
+<div class="viewcode-block" id="ASTRAProjector2D.reconstruct"><a class="viewcode-back" href="../../ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D.reconstruct">[docs]</a> <span class="k">def</span> <span class="nf">reconstruct</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">method</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Reconstruct an image from a sinogram.</span>
+
+<span class="sd"> :param data: The sinogram data or ID.</span>
+<span class="sd"> :type data: :class:`numpy.ndarray` or :class:`int`</span>
+<span class="sd"> :param method: Name of the reconstruction algorithm.</span>
+<span class="sd"> :type method: :class:`string`</span>
+<span class="sd"> :param kwargs: Additional named parameters to pass to :func:`astra.creators.create_reconstruction`.</span>
+<span class="sd"> :returns: :class:`numpy.ndarray` -- The reconstruction.</span>
+
+<span class="sd"> Example of a SIRT reconstruction using CUDA::</span>
+
+<span class="sd"> proj = ASTRAProjector2D(...)</span>
+<span class="sd"> rec = proj.reconstruct(sinogram,&#39;SIRT_CUDA&#39;,iterations=1000)</span>
+
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="n">kwargs</span><span class="p">[</span><span class="s">&#39;returnData&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">True</span>
+ <span class="n">rec_id</span><span class="p">,</span> <span class="n">rec</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_reconstruction</span><span class="p">(</span>
+ <span class="n">method</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">proj_id</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+ <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">rec_id</span><span class="p">)</span>
+ <span class="k">return</span> <span class="n">rec</span>
+</div>
+ <span class="k">def</span> <span class="nf">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">):</span>
+ <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">forwardProject</span><span class="p">(</span><span class="n">data</span><span class="p">)</span></div>
+</pre></div>
+
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+ <div class="body">
+
+ <h1>Source code for astra.algorithm</h1><div class="highlight"><pre>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="c">#Copyright 2013 Centrum Wiskunde &amp; Informatica, Amsterdam</span>
+<span class="c">#</span>
+<span class="c">#Author: Daniel M. Pelt</span>
+<span class="c">#Contact: D.M.Pelt@cwi.nl</span>
+<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span>
+<span class="c">#</span>
+<span class="c">#</span>
+<span class="c">#This file is part of the Python interface to the</span>
+<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox (&quot;ASTRA Toolbox&quot;).</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span>
+<span class="c">#it under the terms of the GNU General Public License as published by</span>
+<span class="c">#the Free Software Foundation, either version 3 of the License, or</span>
+<span class="c">#(at your option) any later version.</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span>
+<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
+<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
+<span class="c">#GNU General Public License for more details.</span>
+<span class="c">#</span>
+<span class="c">#You should have received a copy of the GNU General Public License</span>
+<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see &lt;http://www.gnu.org/licenses/&gt;.</span>
+<span class="c">#</span>
+<span class="c">#-----------------------------------------------------------------------</span>
+
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">algorithm_c</span> <span class="k">as</span> <span class="n">a</span>
+
+<div class="viewcode-block" id="create"><a class="viewcode-back" href="../../algorithm.html#astra.algorithm.create">[docs]</a><span class="k">def</span> <span class="nf">create</span><span class="p">(</span><span class="n">config</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create algorithm object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param config: Algorithm options.</span>
+<span class="sd"> :type config: :class:`dict`</span>
+<span class="sd"> :returns: :class:`int` -- the ID of the constructed object.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">config</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="run"><a class="viewcode-back" href="../../algorithm.html#astra.algorithm.run">[docs]</a><span class="k">def</span> <span class="nf">run</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">iterations</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Run an algorithm.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :param iterations: Number of iterations to run.</span>
+<span class="sd"> :type iterations: :class:`int`</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">i</span><span class="p">,</span><span class="n">iterations</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="get_res_norm"><a class="viewcode-back" href="../../algorithm.html#astra.algorithm.get_res_norm">[docs]</a><span class="k">def</span> <span class="nf">get_res_norm</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get residual norm of algorithm.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`float` -- The residual norm.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+
+ <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">get_res_norm</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+ </div>
+<div class="viewcode-block" id="delete"><a class="viewcode-back" href="../../algorithm.html#astra.algorithm.delete">[docs]</a><span class="k">def</span> <span class="nf">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Delete a matrix object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param ids: ID or list of ID&#39;s to delete.</span>
+<span class="sd"> :type ids: :class:`int` or :class:`list`</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="clear"><a class="viewcode-back" href="../../algorithm.html#astra.algorithm.clear">[docs]</a><span class="k">def</span> <span class="nf">clear</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Clear all matrix objects.&quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+</div>
+<div class="viewcode-block" id="info"><a class="viewcode-back" href="../../algorithm.html#astra.algorithm.info">[docs]</a><span class="k">def</span> <span class="nf">info</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Print info on matrix objects in memory.&quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">info</span><span class="p">()</span></div>
+</pre></div>
+
+ </div>
+ </div>
+ </div>
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+ <div class="sphinxsidebarwrapper">
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+ Enter search terms or a module, class or function name.
+ </p>
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+ >modules</a> |</li>
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+ ga('send', 'pageview');
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+</html> \ No newline at end of file
diff --git a/python/docSRC/_build/html/_modules/astra/astra.html b/python/docSRC/_build/html/_modules/astra/astra.html
new file mode 100644
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+++ b/python/docSRC/_build/html/_modules/astra/astra.html
@@ -0,0 +1,163 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <title>astra.astra &mdash; PyASTRAToolbox 1.6 documentation</title>
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+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px">
+ <a href="../../genindex.html" title="General Index"
+ accesskey="I">index</a></li>
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+ <a href="../../py-modindex.html" title="Python Module Index"
+ >modules</a> |</li>
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+ <div class="body">
+
+ <h1>Source code for astra.astra</h1><div class="highlight"><pre>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="c">#Copyright 2013 Centrum Wiskunde &amp; Informatica, Amsterdam</span>
+<span class="c">#</span>
+<span class="c">#Author: Daniel M. Pelt</span>
+<span class="c">#Contact: D.M.Pelt@cwi.nl</span>
+<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span>
+<span class="c">#</span>
+<span class="c">#</span>
+<span class="c">#This file is part of the Python interface to the</span>
+<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox (&quot;ASTRA Toolbox&quot;).</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span>
+<span class="c">#it under the terms of the GNU General Public License as published by</span>
+<span class="c">#the Free Software Foundation, either version 3 of the License, or</span>
+<span class="c">#(at your option) any later version.</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span>
+<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
+<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
+<span class="c">#GNU General Public License for more details.</span>
+<span class="c">#</span>
+<span class="c">#You should have received a copy of the GNU General Public License</span>
+<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see &lt;http://www.gnu.org/licenses/&gt;.</span>
+<span class="c">#</span>
+<span class="c">#-----------------------------------------------------------------------</span>
+
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">astra_c</span> <span class="k">as</span> <span class="n">a</span>
+
+<div class="viewcode-block" id="credits"><a class="viewcode-back" href="../../astra.html#astra.astra.credits">[docs]</a><span class="k">def</span> <span class="nf">credits</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Print credits of the ASTRA Toolbox.&quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">credits</span><span class="p">()</span>
+
+</div>
+<div class="viewcode-block" id="use_cuda"><a class="viewcode-back" href="../../astra.html#astra.astra.use_cuda">[docs]</a><span class="k">def</span> <span class="nf">use_cuda</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Test if CUDA is enabled.</span>
+<span class="sd"> </span>
+<span class="sd"> :returns: :class:`bool` -- ``True`` if CUDA is enabled.</span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">use_cuda</span><span class="p">()</span>
+
+</div>
+<div class="viewcode-block" id="version"><a class="viewcode-back" href="../../astra.html#astra.astra.version">[docs]</a><span class="k">def</span> <span class="nf">version</span><span class="p">(</span><span class="n">printToScreen</span><span class="o">=</span><span class="bp">False</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Check version of the ASTRA Toolbox.</span>
+<span class="sd"> </span>
+<span class="sd"> :param printToScreen: If ``True``, print version string. If ``False``, return version integer.</span>
+<span class="sd"> :type printToScreen: :class:`bool`</span>
+<span class="sd"> :returns: :class:`string` or :class:`int` -- The version string or integer.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">version</span><span class="p">(</span><span class="n">printToScreen</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="set_gpu_index"><a class="viewcode-back" href="../../astra.html#astra.astra.set_gpu_index">[docs]</a><span class="k">def</span> <span class="nf">set_gpu_index</span><span class="p">(</span><span class="n">idx</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Set default GPU index to use.</span>
+<span class="sd"> </span>
+<span class="sd"> :param idx: GPU index</span>
+<span class="sd"> :type idx: :class:`int`</span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="n">a</span><span class="o">.</span><span class="n">set_gpu_index</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span></div>
+</pre></div>
+
+ </div>
+ </div>
+ </div>
+ <div class="sphinxsidebar">
+ <div class="sphinxsidebarwrapper">
+<div id="searchbox" style="display: none">
+ <h3>Quick search</h3>
+ <form class="search" action="../../search.html" method="get">
+ <input type="text" name="q" />
+ <input type="submit" value="Go" />
+ <input type="hidden" name="check_keywords" value="yes" />
+ <input type="hidden" name="area" value="default" />
+ </form>
+ <p class="searchtip" style="font-size: 90%">
+ Enter search terms or a module, class or function name.
+ </p>
+</div>
+<script type="text/javascript">$('#searchbox').show(0);</script>
+ </div>
+ </div>
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+ </div>
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+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px">
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+ <a href="../../py-modindex.html" title="Python Module Index"
+ >modules</a> |</li>
+ <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> &raquo;</li>
+ <li><a href="../index.html" >Module code</a> &raquo;</li>
+ </ul>
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+ &copy; Copyright 2013, Centrum Wiskunde &amp; Informatica, Amsterdam.
+ Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
+ </div>
+<script>
+ (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
+ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
+ m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
+ })(window,document,'script','//www.google-analytics.com/analytics.js','ga');
+
+ ga('create', 'UA-40340335-1', 'dmpelt.github.io');
+ ga('send', 'pageview');
+
+</script>
+
+ </body>
+</html> \ No newline at end of file
diff --git a/python/docSRC/_build/html/_modules/astra/creators.html b/python/docSRC/_build/html/_modules/astra/creators.html
new file mode 100644
index 0000000..c43978a
--- /dev/null
+++ b/python/docSRC/_build/html/_modules/astra/creators.html
@@ -0,0 +1,668 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+
+
+<html xmlns="http://www.w3.org/1999/xhtml">
+ <head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+
+ <title>astra.creators &mdash; PyASTRAToolbox 1.6 documentation</title>
+
+ <link rel="stylesheet" href="../../_static/default.css" type="text/css" />
+ <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
+
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: '../../',
+ VERSION: '1.6',
+ COLLAPSE_INDEX: false,
+ FILE_SUFFIX: '.html',
+ HAS_SOURCE: true
+ };
+ </script>
+ <script type="text/javascript" src="../../_static/jquery.js"></script>
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+ <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
+ <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../../index.html" />
+ <link rel="up" title="Module code" href="../index.html" />
+ </head>
+ <body>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px">
+ <a href="../../genindex.html" title="General Index"
+ accesskey="I">index</a></li>
+ <li class="right" >
+ <a href="../../py-modindex.html" title="Python Module Index"
+ >modules</a> |</li>
+ <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> &raquo;</li>
+ <li><a href="../index.html" accesskey="U">Module code</a> &raquo;</li>
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+
+ <h1>Source code for astra.creators</h1><div class="highlight"><pre>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="c">#Copyright 2013 Centrum Wiskunde &amp; Informatica, Amsterdam</span>
+<span class="c">#</span>
+<span class="c">#Author: Daniel M. Pelt</span>
+<span class="c">#Contact: D.M.Pelt@cwi.nl</span>
+<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span>
+<span class="c">#</span>
+<span class="c">#</span>
+<span class="c">#This file is part of the Python interface to the</span>
+<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox (&quot;ASTRA Toolbox&quot;).</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span>
+<span class="c">#it under the terms of the GNU General Public License as published by</span>
+<span class="c">#the Free Software Foundation, either version 3 of the License, or</span>
+<span class="c">#(at your option) any later version.</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span>
+<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
+<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
+<span class="c">#GNU General Public License for more details.</span>
+<span class="c">#</span>
+<span class="c">#You should have received a copy of the GNU General Public License</span>
+<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see &lt;http://www.gnu.org/licenses/&gt;.</span>
+<span class="c">#</span>
+<span class="c">#-----------------------------------------------------------------------</span>
+
+<span class="kn">import</span> <span class="nn">six</span>
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="kn">as</span> <span class="nn">np</span>
+<span class="kn">import</span> <span class="nn">math</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data2d</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data3d</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">projector</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">algorithm</span>
+
+<div class="viewcode-block" id="astra_dict"><a class="viewcode-back" href="../../creators.html#astra.creators.astra_dict">[docs]</a><span class="k">def</span> <span class="nf">astra_dict</span><span class="p">(</span><span class="n">intype</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Creates a dict to use with the ASTRA Toolbox.</span>
+<span class="sd"> </span>
+<span class="sd"> :param intype: Type of the ASTRA object.</span>
+<span class="sd"> :type intype: :class:`string`</span>
+<span class="sd"> :returns: :class:`dict` -- An ASTRA dict of type ``intype``.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">if</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">&#39;SIRT_CUDA2&#39;</span><span class="p">:</span>
+ <span class="n">intype</span> <span class="o">=</span> <span class="s">&#39;SIRT_CUDA&#39;</span>
+ <span class="n">six</span><span class="o">.</span><span class="n">print_</span><span class="p">(</span><span class="s">&#39;SIRT_CUDA2 has been deprecated. Use SIRT_CUDA instead.&#39;</span><span class="p">)</span>
+ <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">&#39;FP_CUDA2&#39;</span><span class="p">:</span>
+ <span class="n">intype</span> <span class="o">=</span> <span class="s">&#39;FP_CUDA&#39;</span>
+ <span class="n">six</span><span class="o">.</span><span class="n">print_</span><span class="p">(</span><span class="s">&#39;FP_CUDA2 has been deprecated. Use FP_CUDA instead.&#39;</span><span class="p">)</span>
+ <span class="k">return</span> <span class="p">{</span><span class="s">&#39;type&#39;</span><span class="p">:</span> <span class="n">intype</span><span class="p">}</span>
+</div>
+<div class="viewcode-block" id="create_vol_geom"><a class="viewcode-back" href="../../creators.html#astra.creators.create_vol_geom">[docs]</a><span class="k">def</span> <span class="nf">create_vol_geom</span><span class="p">(</span><span class="o">*</span><span class="n">varargin</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create a volume geometry structure.</span>
+
+<span class="sd">This method can be called in a number of ways:</span>
+
+<span class="sd">``create_vol_geom(N)``:</span>
+<span class="sd"> :returns: A 2D volume geometry of size :math:`N \\times N`.</span>
+
+<span class="sd">``create_vol_geom((M, N))``:</span>
+<span class="sd"> :returns: A 2D volume geometry of size :math:`M \\times N`.</span>
+
+<span class="sd">``create_vol_geom(M, N)``:</span>
+<span class="sd"> :returns: A 2D volume geometry of size :math:`M \\times N`.</span>
+
+<span class="sd">``create_vol_geom(M, N, minx, maxx, miny, maxy)``:</span>
+<span class="sd"> :returns: A 2D volume geometry of size :math:`M \\times N`, windowed as :math:`minx \\leq x \\leq maxx` and :math:`miny \\leq y \\leq maxy`.</span>
+
+<span class="sd">``create_vol_geom((M, N, Z))``:</span>
+<span class="sd"> :returns: A 3D volume geometry of size :math:`M \\times N \\times Z`.</span>
+
+<span class="sd">``create_vol_geom(M, N, Z)``:</span>
+<span class="sd"> :returns: A 3D volume geometry of size :math:`M \\times N \\times Z`.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+ <span class="n">vol_geom</span> <span class="o">=</span> <span class="p">{</span><span class="s">&#39;option&#39;</span><span class="p">:</span> <span class="p">{}}</span>
+ <span class="c"># astra_create_vol_geom(row_count)</span>
+ <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">int</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridRowCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridColCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinX&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxX&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinY&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxY&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="c"># astra_create_vol_geom([row_count col_count])</span>
+ <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridRowCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridColCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinX&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxX&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinY&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxY&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="c"># astra_create_vol_geom([row_count col_count slice_count])</span>
+ <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">==</span> <span class="mi">3</span><span class="p">:</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridRowCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridColCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridSliceCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinX&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxX&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinY&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxY&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinZ&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxZ&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="c"># astra_create_vol_geom(row_count, col_count)</span>
+ <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridRowCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridColCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinX&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxX&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinY&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxY&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span>
+ <span class="c"># astra_create_vol_geom(row_count, col_count, min_x, max_x, min_y, max_y)</span>
+ <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">)</span> <span class="o">==</span> <span class="mi">6</span><span class="p">:</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridRowCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridColCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinX&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxX&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinY&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxY&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span>
+ <span class="c"># astra_create_vol_geom(row_count, col_count, slice_count)</span>
+ <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">)</span> <span class="o">==</span> <span class="mi">3</span><span class="p">:</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridRowCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridColCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+ <span class="n">vol_geom</span><span class="p">[</span><span class="s">&#39;GridSliceCount&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
+ <span class="k">return</span> <span class="n">vol_geom</span>
+
+</div>
+<div class="viewcode-block" id="create_proj_geom"><a class="viewcode-back" href="../../creators.html#astra.creators.create_proj_geom">[docs]</a><span class="k">def</span> <span class="nf">create_proj_geom</span><span class="p">(</span><span class="n">intype</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create a projection geometry.</span>
+
+<span class="sd">This method can be called in a number of ways:</span>
+
+<span class="sd">``create_proj_geom(&#39;parallel&#39;, detector_spacing, det_count, angles)``:</span>
+
+<span class="sd">:param detector_spacing: Distance between two adjacent detector pixels.</span>
+<span class="sd">:type detector_spacing: :class:`float`</span>
+<span class="sd">:param det_count: Number of detector pixels.</span>
+<span class="sd">:type det_count: :class:`int`</span>
+<span class="sd">:param angles: Array of angles in radians.</span>
+<span class="sd">:type angles: :class:`numpy.ndarray`</span>
+<span class="sd">:returns: A parallel projection geometry.</span>
+
+
+<span class="sd">``create_proj_geom(&#39;fanflat&#39;, det_width, det_count, angles, source_origin, source_det)``:</span>
+
+<span class="sd">:param det_width: Size of a detector pixel.</span>
+<span class="sd">:type det_width: :class:`float`</span>
+<span class="sd">:param det_count: Number of detector pixels.</span>
+<span class="sd">:type det_count: :class:`int`</span>
+<span class="sd">:param angles: Array of angles in radians.</span>
+<span class="sd">:type angles: :class:`numpy.ndarray`</span>
+<span class="sd">:param source_origin: Position of the source.</span>
+<span class="sd">:param source_det: Position of the detector</span>
+<span class="sd">:returns: A fan-beam projection geometry.</span>
+
+<span class="sd">``create_proj_geom(&#39;fanflat_vec&#39;, det_count, V)``:</span>
+
+<span class="sd">:param det_count: Number of detector pixels.</span>
+<span class="sd">:type det_count: :class:`int`</span>
+<span class="sd">:param V: Vector array.</span>
+<span class="sd">:type V: :class:`numpy.ndarray`</span>
+<span class="sd">:returns: A fan-beam projection geometry.</span>
+
+<span class="sd">``create_proj_geom(&#39;parallel3d&#39;, detector_spacing_x, detector_spacing_y, det_row_count, det_col_count, angles)``:</span>
+
+<span class="sd">:param detector_spacing_*: Distance between two adjacent detector pixels.</span>
+<span class="sd">:type detector_spacing_*: :class:`float`</span>
+<span class="sd">:param det_row_count: Number of detector pixel rows.</span>
+<span class="sd">:type det_row_count: :class:`int`</span>
+<span class="sd">:param det_col_count: Number of detector pixel columns.</span>
+<span class="sd">:type det_col_count: :class:`int`</span>
+<span class="sd">:param angles: Array of angles in radians.</span>
+<span class="sd">:type angles: :class:`numpy.ndarray`</span>
+<span class="sd">:returns: A parallel projection geometry.</span>
+
+<span class="sd">``create_proj_geom(&#39;cone&#39;, detector_spacing_x, detector_spacing_y, det_row_count, det_col_count, angles, source_origin, source_det)``:</span>
+
+<span class="sd">:param detector_spacing_*: Distance between two adjacent detector pixels.</span>
+<span class="sd">:type detector_spacing_*: :class:`float`</span>
+<span class="sd">:param det_row_count: Number of detector pixel rows.</span>
+<span class="sd">:type det_row_count: :class:`int`</span>
+<span class="sd">:param det_col_count: Number of detector pixel columns.</span>
+<span class="sd">:type det_col_count: :class:`int`</span>
+<span class="sd">:param angles: Array of angles in radians.</span>
+<span class="sd">:type angles: :class:`numpy.ndarray`</span>
+<span class="sd">:param source_origin: Distance between point source and origin.</span>
+<span class="sd">:type source_origin: :class:`float`</span>
+<span class="sd">:param source_det: Distance between the detector and origin.</span>
+<span class="sd">:type source_det: :class:`float`</span>
+<span class="sd">:returns: A cone-beam projection geometry.</span>
+
+<span class="sd">``create_proj_geom(&#39;cone_vec&#39;, det_row_count, det_col_count, V)``:</span>
+
+<span class="sd">:param det_row_count: Number of detector pixel rows.</span>
+<span class="sd">:type det_row_count: :class:`int`</span>
+<span class="sd">:param det_col_count: Number of detector pixel columns.</span>
+<span class="sd">:type det_col_count: :class:`int`</span>
+<span class="sd">:param V: Vector array.</span>
+<span class="sd">:type V: :class:`numpy.ndarray`</span>
+<span class="sd">:returns: A cone-beam projection geometry.</span>
+
+<span class="sd">``create_proj_geom(&#39;parallel3d_vec&#39;, det_row_count, det_col_count, V)``:</span>
+
+<span class="sd">:param det_row_count: Number of detector pixel rows.</span>
+<span class="sd">:type det_row_count: :class:`int`</span>
+<span class="sd">:param det_col_count: Number of detector pixel columns.</span>
+<span class="sd">:type det_col_count: :class:`int`</span>
+<span class="sd">:param V: Vector array.</span>
+<span class="sd">:type V: :class:`numpy.ndarray`</span>
+<span class="sd">:returns: A parallel projection geometry.</span>
+
+<span class="sd">``create_proj_geom(&#39;sparse_matrix&#39;, det_width, det_count, angles, matrix_id)``:</span>
+
+<span class="sd">:param det_width: Size of a detector pixel.</span>
+<span class="sd">:type det_width: :class:`float`</span>
+<span class="sd">:param det_count: Number of detector pixels.</span>
+<span class="sd">:type det_count: :class:`int`</span>
+<span class="sd">:param angles: Array of angles in radians.</span>
+<span class="sd">:type angles: :class:`numpy.ndarray`</span>
+<span class="sd">:param matrix_id: ID of the sparse matrix.</span>
+<span class="sd">:type matrix_id: :class:`int`</span>
+<span class="sd">:returns: A projection geometry based on a sparse matrix.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+ <span class="k">if</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">&#39;parallel&#39;</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">3</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span>
+ <span class="s">&#39;not enough variables: astra_create_proj_geom(parallel, detector_spacing, det_count, angles)&#39;</span><span class="p">)</span>
+ <span class="k">return</span> <span class="p">{</span><span class="s">&#39;type&#39;</span><span class="p">:</span> <span class="s">&#39;parallel&#39;</span><span class="p">,</span> <span class="s">&#39;DetectorWidth&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s">&#39;DetectorCount&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="s">&#39;ProjectionAngles&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">]}</span>
+ <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">&#39;fanflat&#39;</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">5</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">&#39;not enough variables: astra_create_proj_geom(fanflat, det_width, det_count, angles, source_origin, source_det)&#39;</span><span class="p">)</span>
+ <span class="k">return</span> <span class="p">{</span><span class="s">&#39;type&#39;</span><span class="p">:</span> <span class="s">&#39;fanflat&#39;</span><span class="p">,</span> <span class="s">&#39;DetectorWidth&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s">&#39;DetectorCount&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="s">&#39;ProjectionAngles&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span> <span class="s">&#39;DistanceOriginSource&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span> <span class="s">&#39;DistanceOriginDetector&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">4</span><span class="p">]}</span>
+ <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">&#39;fanflat_vec&#39;</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">2</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">&#39;not enough variables: astra_create_proj_geom(fanflat_vec, det_count, V)&#39;</span><span class="p">)</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mi">6</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">&#39;V should be a Nx6 matrix, with N the number of projections&#39;</span><span class="p">)</span>
+ <span class="k">return</span> <span class="p">{</span><span class="s">&#39;type&#39;</span><span class="p">:</span><span class="s">&#39;fanflat_vec&#39;</span><span class="p">,</span> <span class="s">&#39;DetectorCount&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s">&#39;Vectors&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">]}</span>
+ <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">&#39;parallel3d&#39;</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">5</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">&#39;not enough variables: astra_create_proj_geom(parallel3d, detector_spacing_x, detector_spacing_y, det_row_count, det_col_count, angles)&#39;</span><span class="p">)</span>
+ <span class="k">return</span> <span class="p">{</span><span class="s">&#39;type&#39;</span><span class="p">:</span><span class="s">&#39;parallel3d&#39;</span><span class="p">,</span> <span class="s">&#39;DetectorSpacingX&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s">&#39;DetectorSpacingY&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="s">&#39;DetectorRowCount&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span> <span class="s">&#39;DetectorColCount&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span><span class="s">&#39;ProjectionAngles&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">4</span><span class="p">]}</span>
+ <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">&#39;cone&#39;</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">7</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">&#39;not enough variables: astra_create_proj_geom(cone, detector_spacing_x, detector_spacing_y, det_row_count, det_col_count, angles, source_origin, source_det)&#39;</span><span class="p">)</span>
+ <span class="k">return</span> <span class="p">{</span><span class="s">&#39;type&#39;</span><span class="p">:</span> <span class="s">&#39;cone&#39;</span><span class="p">,</span><span class="s">&#39;DetectorSpacingX&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s">&#39;DetectorSpacingY&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="s">&#39;DetectorRowCount&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span><span class="s">&#39;DetectorColCount&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span><span class="s">&#39;ProjectionAngles&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">4</span><span class="p">],</span><span class="s">&#39;DistanceOriginSource&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">5</span><span class="p">],</span><span class="s">&#39;DistanceOriginDetector&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">6</span><span class="p">]}</span>
+ <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">&#39;cone_vec&#39;</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">3</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">&#39;not enough variables: astra_create_proj_geom(cone_vec, det_row_count, det_col_count, V)&#39;</span><span class="p">)</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mi">12</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">&#39;V should be a Nx12 matrix, with N the number of projections&#39;</span><span class="p">)</span>
+ <span class="k">return</span> <span class="p">{</span><span class="s">&#39;type&#39;</span><span class="p">:</span> <span class="s">&#39;cone_vec&#39;</span><span class="p">,</span><span class="s">&#39;DetectorRowCount&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span><span class="s">&#39;DetectorColCount&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span><span class="s">&#39;Vectors&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">]}</span>
+ <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">&#39;parallel3d_vec&#39;</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">3</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">&#39;not enough variables: astra_create_proj_geom(parallel3d_vec, det_row_count, det_col_count, V)&#39;</span><span class="p">)</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mi">12</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">&#39;V should be a Nx12 matrix, with N the number of projections&#39;</span><span class="p">)</span>
+ <span class="k">return</span> <span class="p">{</span><span class="s">&#39;type&#39;</span><span class="p">:</span> <span class="s">&#39;parallel3d_vec&#39;</span><span class="p">,</span><span class="s">&#39;DetectorRowCount&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span><span class="s">&#39;DetectorColCount&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span><span class="s">&#39;Vectors&#39;</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">]}</span>
+ <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">&#39;sparse_matrix&#39;</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span>
+ <span class="s">&#39;not enough variables: astra_create_proj_geom(sparse_matrix, det_width, det_count, angles, matrix_id)&#39;</span><span class="p">)</span>
+ <span class="k">return</span> <span class="p">{</span><span class="s">&#39;type&#39;</span><span class="p">:</span> <span class="s">&#39;sparse_matrix&#39;</span><span class="p">,</span> <span class="s">&#39;DetectorWidth&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s">&#39;DetectorCount&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="s">&#39;ProjectionAngles&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span> <span class="s">&#39;MatrixID&#39;</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">3</span><span class="p">]}</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">&#39;Error: unknown type &#39;</span> <span class="o">+</span> <span class="n">intype</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="create_backprojection"><a class="viewcode-back" href="../../creators.html#astra.creators.create_backprojection">[docs]</a><span class="k">def</span> <span class="nf">create_backprojection</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">proj_id</span><span class="p">,</span> <span class="n">useCUDA</span><span class="o">=</span><span class="bp">False</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create a backprojection of a sinogram (2D).</span>
+
+<span class="sd">:param data: Sinogram data or ID.</span>
+<span class="sd">:type data: :class:`numpy.ndarray` or :class:`int`</span>
+<span class="sd">:param proj_id: ID of the projector to use.</span>
+<span class="sd">:type proj_id: :class:`int`</span>
+<span class="sd">:param useCUDA: If ``True``, use CUDA for the calculation.</span>
+<span class="sd">:type useCUDA: :class:`bool`</span>
+<span class="sd">:param returnData: If False, only return the ID of the backprojection.</span>
+<span class="sd">:type returnData: :class:`bool`</span>
+<span class="sd">:returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`) -- If ``returnData=False``, returns the ID of the backprojection. Otherwise, returns a tuple containing the ID of the backprojection and the backprojection itself, in that order.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+ <span class="n">proj_geom</span> <span class="o">=</span> <span class="n">projector</span><span class="o">.</span><span class="n">projection_geometry</span><span class="p">(</span><span class="n">proj_id</span><span class="p">)</span>
+ <span class="n">vol_geom</span> <span class="o">=</span> <span class="n">projector</span><span class="o">.</span><span class="n">volume_geometry</span><span class="p">(</span><span class="n">proj_id</span><span class="p">)</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">&#39;-sino&#39;</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data</span>
+ <span class="n">vol_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">&#39;-vol&#39;</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
+
+ <span class="n">algString</span> <span class="o">=</span> <span class="s">&#39;BP&#39;</span>
+ <span class="k">if</span> <span class="n">useCUDA</span><span class="p">:</span>
+ <span class="n">algString</span> <span class="o">=</span> <span class="n">algString</span> <span class="o">+</span> <span class="s">&#39;_CUDA&#39;</span>
+
+ <span class="n">cfg</span> <span class="o">=</span> <span class="n">astra_dict</span><span class="p">(</span><span class="n">algString</span><span class="p">)</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">useCUDA</span><span class="p">:</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;ProjectorId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">proj_id</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;ProjectionDataId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">sino_id</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;ReconstructionDataId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">vol_id</span>
+ <span class="n">alg_id</span> <span class="o">=</span> <span class="n">algorithm</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span>
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span>
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span>
+
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">sino_id</span><span class="p">)</span>
+
+ <span class="k">if</span> <span class="n">returnData</span><span class="p">:</span>
+ <span class="k">return</span> <span class="n">vol_id</span><span class="p">,</span> <span class="n">data2d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">vol_id</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="k">return</span> <span class="n">vol_id</span>
+</div>
+<div class="viewcode-block" id="create_backprojection3d_gpu"><a class="viewcode-back" href="../../creators.html#astra.creators.create_backprojection3d_gpu">[docs]</a><span class="k">def</span> <span class="nf">create_backprojection3d_gpu</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create a backprojection of a sinogram (3D) using CUDA.</span>
+
+<span class="sd">:param data: Sinogram data or ID.</span>
+<span class="sd">:type data: :class:`numpy.ndarray` or :class:`int`</span>
+<span class="sd">:param proj_geom: Projection geometry.</span>
+<span class="sd">:type proj_geom: :class:`dict`</span>
+<span class="sd">:param vol_geom: Volume geometry.</span>
+<span class="sd">:type vol_geom: :class:`dict`</span>
+<span class="sd">:param returnData: If False, only return the ID of the backprojection.</span>
+<span class="sd">:type returnData: :class:`bool`</span>
+<span class="sd">:returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`) -- If ``returnData=False``, returns the ID of the backprojection. Otherwise, returns a tuple containing the ID of the backprojection and the backprojection itself, in that order.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data3d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">&#39;-sino&#39;</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data</span>
+
+ <span class="n">vol_id</span> <span class="o">=</span> <span class="n">data3d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">&#39;-vol&#39;</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
+
+ <span class="n">cfg</span> <span class="o">=</span> <span class="n">astra_dict</span><span class="p">(</span><span class="s">&#39;BP3D_CUDA&#39;</span><span class="p">)</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;ProjectionDataId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">sino_id</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;ReconstructionDataId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">vol_id</span>
+ <span class="n">alg_id</span> <span class="o">=</span> <span class="n">algorithm</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span>
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span>
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span>
+
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">data3d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">sino_id</span><span class="p">)</span>
+
+ <span class="k">if</span> <span class="n">returnData</span><span class="p">:</span>
+ <span class="k">return</span> <span class="n">vol_id</span><span class="p">,</span> <span class="n">data3d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">vol_id</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="k">return</span> <span class="n">vol_id</span>
+
+</div>
+<div class="viewcode-block" id="create_sino"><a class="viewcode-back" href="../../creators.html#astra.creators.create_sino">[docs]</a><span class="k">def</span> <span class="nf">create_sino</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">proj_id</span><span class="o">=</span><span class="bp">None</span><span class="p">,</span> <span class="n">proj_geom</span><span class="o">=</span><span class="bp">None</span><span class="p">,</span> <span class="n">vol_geom</span><span class="o">=</span><span class="bp">None</span><span class="p">,</span>
+ <span class="n">useCUDA</span><span class="o">=</span><span class="bp">False</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">,</span> <span class="n">gpuIndex</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create a forward projection of an image (2D).</span>
+
+<span class="sd"> :param data: Image data or ID.</span>
+<span class="sd"> :type data: :class:`numpy.ndarray` or :class:`int`</span>
+<span class="sd"> :param proj_id: ID of the projector to use.</span>
+<span class="sd"> :type proj_id: :class:`int`</span>
+<span class="sd"> :param proj_geom: Projection geometry.</span>
+<span class="sd"> :type proj_geom: :class:`dict`</span>
+<span class="sd"> :param vol_geom: Volume geometry.</span>
+<span class="sd"> :type vol_geom: :class:`dict`</span>
+<span class="sd"> :param useCUDA: If ``True``, use CUDA for the calculation.</span>
+<span class="sd"> :type useCUDA: :class:`bool`</span>
+<span class="sd"> :param returnData: If False, only return the ID of the forward projection.</span>
+<span class="sd"> :type returnData: :class:`bool`</span>
+<span class="sd"> :param gpuIndex: Optional GPU index.</span>
+<span class="sd"> :type gpuIndex: :class:`int`</span>
+<span class="sd"> :returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`)</span>
+
+<span class="sd"> If ``returnData=False``, returns the ID of the forward</span>
+<span class="sd"> projection. Otherwise, returns a tuple containing the ID of the</span>
+<span class="sd"> forward projection and the forward projection itself, in that</span>
+<span class="sd"> order.</span>
+
+<span class="sd"> The geometry of setup is defined by ``proj_id`` or with</span>
+<span class="sd"> ``proj_geom`` and ``vol_geom``. If ``proj_id`` is given, then</span>
+<span class="sd"> ``proj_geom`` and ``vol_geom`` must be None and vice versa.</span>
+<span class="sd">&quot;&quot;&quot;</span>
+ <span class="k">if</span> <span class="n">proj_id</span> <span class="ow">is</span> <span class="ow">not</span> <span class="bp">None</span><span class="p">:</span>
+ <span class="n">proj_geom</span> <span class="o">=</span> <span class="n">projector</span><span class="o">.</span><span class="n">projection_geometry</span><span class="p">(</span><span class="n">proj_id</span><span class="p">)</span>
+ <span class="n">vol_geom</span> <span class="o">=</span> <span class="n">projector</span><span class="o">.</span><span class="n">volume_geometry</span><span class="p">(</span><span class="n">proj_id</span><span class="p">)</span>
+ <span class="k">elif</span> <span class="n">proj_geom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="bp">None</span> <span class="ow">and</span> <span class="n">vol_geom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="bp">None</span><span class="p">:</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">useCUDA</span><span class="p">:</span>
+ <span class="c"># We need more parameters to create projector.</span>
+ <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+ <span class="sd">&quot;&quot;&quot;A ``proj_id`` is needed when CUDA is not used.&quot;&quot;&quot;</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">&quot;&quot;&quot;The geometry setup is not defined.</span>
+<span class="s"> The geometry of setup is defined by ``proj_id`` or with</span>
+<span class="s"> ``proj_geom`` and ``vol_geom``. If ``proj_id`` is given, then</span>
+<span class="s"> ``proj_geom`` and ``vol_geom`` must be None and vice versa.&quot;&quot;&quot;</span><span class="p">)</span>
+
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">volume_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">&#39;-vol&#39;</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">volume_id</span> <span class="o">=</span> <span class="n">data</span>
+ <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">&#39;-sino&#39;</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
+ <span class="n">algString</span> <span class="o">=</span> <span class="s">&#39;FP&#39;</span>
+ <span class="k">if</span> <span class="n">useCUDA</span><span class="p">:</span>
+ <span class="n">algString</span> <span class="o">=</span> <span class="n">algString</span> <span class="o">+</span> <span class="s">&#39;_CUDA&#39;</span>
+ <span class="n">cfg</span> <span class="o">=</span> <span class="n">astra_dict</span><span class="p">(</span><span class="n">algString</span><span class="p">)</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">useCUDA</span><span class="p">:</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;ProjectorId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">proj_id</span>
+ <span class="k">if</span> <span class="n">gpuIndex</span> <span class="ow">is</span> <span class="ow">not</span> <span class="bp">None</span><span class="p">:</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s">&#39;GPUindex&#39;</span><span class="p">:</span> <span class="n">gpuIndex</span><span class="p">}</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;ProjectionDataId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">sino_id</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;VolumeDataId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">volume_id</span>
+ <span class="n">alg_id</span> <span class="o">=</span> <span class="n">algorithm</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span>
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span>
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span>
+
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">volume_id</span><span class="p">)</span>
+ <span class="k">if</span> <span class="n">returnData</span><span class="p">:</span>
+ <span class="k">return</span> <span class="n">sino_id</span><span class="p">,</span> <span class="n">data2d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">sino_id</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="k">return</span> <span class="n">sino_id</span>
+
+
+</div>
+<div class="viewcode-block" id="create_sino3d_gpu"><a class="viewcode-back" href="../../creators.html#astra.creators.create_sino3d_gpu">[docs]</a><span class="k">def</span> <span class="nf">create_sino3d_gpu</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">,</span> <span class="n">gpuIndex</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create a forward projection of an image (3D).</span>
+
+<span class="sd">:param data: Image data or ID.</span>
+<span class="sd">:type data: :class:`numpy.ndarray` or :class:`int`</span>
+<span class="sd">:param proj_geom: Projection geometry.</span>
+<span class="sd">:type proj_geom: :class:`dict`</span>
+<span class="sd">:param vol_geom: Volume geometry.</span>
+<span class="sd">:type vol_geom: :class:`dict`</span>
+<span class="sd">:param returnData: If False, only return the ID of the forward projection.</span>
+<span class="sd">:type returnData: :class:`bool`</span>
+<span class="sd">:param gpuIndex: Optional GPU index.</span>
+<span class="sd">:type gpuIndex: :class:`int`</span>
+<span class="sd">:returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`) -- If ``returnData=False``, returns the ID of the forward projection. Otherwise, returns a tuple containing the ID of the forward projection and the forward projection itself, in that order.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">volume_id</span> <span class="o">=</span> <span class="n">data3d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">&#39;-vol&#39;</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">volume_id</span> <span class="o">=</span> <span class="n">data</span>
+ <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data3d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">&#39;-sino&#39;</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
+ <span class="n">algString</span> <span class="o">=</span> <span class="s">&#39;FP3D_CUDA&#39;</span>
+ <span class="n">cfg</span> <span class="o">=</span> <span class="n">astra_dict</span><span class="p">(</span><span class="n">algString</span><span class="p">)</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">gpuIndex</span><span class="o">==</span><span class="bp">None</span><span class="p">:</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">]</span><span class="o">=</span><span class="p">{</span><span class="s">&#39;GPUindex&#39;</span><span class="p">:</span><span class="n">gpuIndex</span><span class="p">}</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;ProjectionDataId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">sino_id</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;VolumeDataId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">volume_id</span>
+ <span class="n">alg_id</span> <span class="o">=</span> <span class="n">algorithm</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span>
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span>
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span>
+
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">data3d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">volume_id</span><span class="p">)</span>
+ <span class="k">if</span> <span class="n">returnData</span><span class="p">:</span>
+ <span class="k">return</span> <span class="n">sino_id</span><span class="p">,</span> <span class="n">data3d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">sino_id</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="k">return</span> <span class="n">sino_id</span>
+
+</div>
+<div class="viewcode-block" id="create_reconstruction"><a class="viewcode-back" href="../../creators.html#astra.creators.create_reconstruction">[docs]</a><span class="k">def</span> <span class="nf">create_reconstruction</span><span class="p">(</span><span class="n">rec_type</span><span class="p">,</span> <span class="n">proj_id</span><span class="p">,</span> <span class="n">sinogram</span><span class="p">,</span> <span class="n">iterations</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">use_mask</span><span class="o">=</span><span class="s">&#39;no&#39;</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([]),</span> <span class="n">use_minc</span><span class="o">=</span><span class="s">&#39;no&#39;</span><span class="p">,</span> <span class="n">minc</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">use_maxc</span><span class="o">=</span><span class="s">&#39;no&#39;</span><span class="p">,</span> <span class="n">maxc</span><span class="o">=</span><span class="mi">255</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">,</span> <span class="n">filterType</span><span class="o">=</span><span class="bp">None</span><span class="p">,</span> <span class="n">filterData</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create a reconstruction of a sinogram (2D).</span>
+
+<span class="sd">:param rec_type: Name of the reconstruction algorithm.</span>
+<span class="sd">:type rec_type: :class:`string`</span>
+<span class="sd">:param proj_id: ID of the projector to use.</span>
+<span class="sd">:type proj_id: :class:`int`</span>
+<span class="sd">:param sinogram: Sinogram data or ID.</span>
+<span class="sd">:type sinogram: :class:`numpy.ndarray` or :class:`int`</span>
+<span class="sd">:param iterations: Number of iterations to run.</span>
+<span class="sd">:type iterations: :class:`int`</span>
+<span class="sd">:param use_mask: Whether to use a mask.</span>
+<span class="sd">:type use_mask: ``&#39;yes&#39;`` or ``&#39;no&#39;``</span>
+<span class="sd">:param mask: Mask data or ID</span>
+<span class="sd">:type mask: :class:`numpy.ndarray` or :class:`int`</span>
+<span class="sd">:param use_minc: Whether to force a minimum value on the reconstruction pixels.</span>
+<span class="sd">:type use_minc: ``&#39;yes&#39;`` or ``&#39;no&#39;``</span>
+<span class="sd">:param minc: Minimum value to use.</span>
+<span class="sd">:type minc: :class:`float`</span>
+<span class="sd">:param use_maxc: Whether to force a maximum value on the reconstruction pixels.</span>
+<span class="sd">:type use_maxc: ``&#39;yes&#39;`` or ``&#39;no&#39;``</span>
+<span class="sd">:param maxc: Maximum value to use.</span>
+<span class="sd">:type maxc: :class:`float`</span>
+<span class="sd">:param returnData: If False, only return the ID of the reconstruction.</span>
+<span class="sd">:type returnData: :class:`bool`</span>
+<span class="sd">:param filterType: Which type of filter to use for filter-based methods.</span>
+<span class="sd">:type filterType: :class:`string`</span>
+<span class="sd">:param filterData: Optional filter data for filter-based methods.</span>
+<span class="sd">:type filterData: :class:`numpy.ndarray`</span>
+<span class="sd">:returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`) -- If ``returnData=False``, returns the ID of the reconstruction. Otherwise, returns a tuple containing the ID of the reconstruction and reconstruction itself, in that order.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+ <span class="n">proj_geom</span> <span class="o">=</span> <span class="n">projector</span><span class="o">.</span><span class="n">projection_geometry</span><span class="p">(</span><span class="n">proj_id</span><span class="p">)</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sinogram</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">&#39;-sino&#39;</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">sinogram</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">sino_id</span> <span class="o">=</span> <span class="n">sinogram</span>
+ <span class="n">vol_geom</span> <span class="o">=</span> <span class="n">projector</span><span class="o">.</span><span class="n">volume_geometry</span><span class="p">(</span><span class="n">proj_id</span><span class="p">)</span>
+ <span class="n">recon_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">&#39;-vol&#39;</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
+ <span class="n">cfg</span> <span class="o">=</span> <span class="n">astra_dict</span><span class="p">(</span><span class="n">rec_type</span><span class="p">)</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="s">&#39;CUDA&#39;</span> <span class="ow">in</span> <span class="n">rec_type</span><span class="p">:</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;ProjectorId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">proj_id</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;ProjectionDataId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">sino_id</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;ReconstructionDataId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">recon_id</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;options&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+ <span class="k">if</span> <span class="n">use_mask</span> <span class="o">==</span> <span class="s">&#39;yes&#39;</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">mask</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">mask_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">&#39;-vol&#39;</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="n">mask</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">mask_id</span> <span class="o">=</span> <span class="n">mask</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;options&#39;</span><span class="p">][</span><span class="s">&#39;ReconstructionMaskId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">mask_id</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">filterType</span> <span class="o">==</span> <span class="bp">None</span><span class="p">:</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;FilterType&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">filterType</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">filterData</span> <span class="o">==</span> <span class="bp">None</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">filterData</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">nexpow</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span>
+ <span class="nb">pow</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="n">math</span><span class="o">.</span><span class="n">ceil</span><span class="p">(</span><span class="n">math</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorCount&#39;</span><span class="p">],</span> <span class="mi">2</span><span class="p">))))</span>
+ <span class="n">filtSize</span> <span class="o">=</span> <span class="n">nexpow</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">+</span> <span class="mi">1</span>
+ <span class="n">filt_proj_geom</span> <span class="o">=</span> <span class="n">create_proj_geom</span><span class="p">(</span>
+ <span class="s">&#39;parallel&#39;</span><span class="p">,</span> <span class="mf">1.0</span><span class="p">,</span> <span class="n">filtSize</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;ProjectionAngles&#39;</span><span class="p">])</span>
+ <span class="n">filt_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">&#39;-sino&#39;</span><span class="p">,</span> <span class="n">filt_proj_geom</span><span class="p">,</span> <span class="n">filterData</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">filt_id</span> <span class="o">=</span> <span class="n">filterData</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;FilterSinogramId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">filt_id</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;options&#39;</span><span class="p">][</span><span class="s">&#39;UseMinConstraint&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">use_minc</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;options&#39;</span><span class="p">][</span><span class="s">&#39;MinConstraintValue&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">minc</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;options&#39;</span><span class="p">][</span><span class="s">&#39;UseMaxConstraint&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">use_maxc</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;options&#39;</span><span class="p">][</span><span class="s">&#39;MaxConstraintValue&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">maxc</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;options&#39;</span><span class="p">][</span><span class="s">&#39;ProjectionOrder&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s">&#39;random&#39;</span>
+ <span class="n">alg_id</span> <span class="o">=</span> <span class="n">algorithm</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span>
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">alg_id</span><span class="p">,</span> <span class="n">iterations</span><span class="p">)</span>
+
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span>
+
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sinogram</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">sino_id</span><span class="p">)</span>
+ <span class="k">if</span> <span class="n">use_mask</span> <span class="o">==</span> <span class="s">&#39;yes&#39;</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">mask</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">mask_id</span><span class="p">)</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">filterData</span> <span class="o">==</span> <span class="bp">None</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">filterData</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">filt_id</span><span class="p">)</span>
+ <span class="k">if</span> <span class="n">returnData</span><span class="p">:</span>
+ <span class="k">return</span> <span class="n">recon_id</span><span class="p">,</span> <span class="n">data2d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">recon_id</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="k">return</span> <span class="n">recon_id</span>
+
+</div>
+<div class="viewcode-block" id="create_projector"><a class="viewcode-back" href="../../creators.html#astra.creators.create_projector">[docs]</a><span class="k">def</span> <span class="nf">create_projector</span><span class="p">(</span><span class="n">proj_type</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create a 2D projector.</span>
+
+<span class="sd">:param proj_type: Projector type, such as ``&#39;line&#39;``, ``&#39;linear&#39;``, ...</span>
+<span class="sd">:type proj_type: :class:`string`</span>
+<span class="sd">:param proj_geom: Projection geometry.</span>
+<span class="sd">:type proj_geom: :class:`dict`</span>
+<span class="sd">:param vol_geom: Volume geometry.</span>
+<span class="sd">:type vol_geom: :class:`dict`</span>
+<span class="sd">:returns: :class:`int` -- The ID of the projector.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+ <span class="k">if</span> <span class="n">proj_type</span> <span class="o">==</span> <span class="s">&#39;blob&#39;</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">&#39;Blob type not yet implemented&#39;</span><span class="p">)</span>
+ <span class="n">cfg</span> <span class="o">=</span> <span class="n">astra_dict</span><span class="p">(</span><span class="n">proj_type</span><span class="p">)</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;ProjectionGeometry&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">proj_geom</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;VolumeGeometry&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">vol_geom</span>
+ <span class="k">return</span> <span class="n">projector</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span></div>
+</pre></div>
+
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+ <h1>Source code for astra.data2d</h1><div class="highlight"><pre>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="c">#Copyright 2013 Centrum Wiskunde &amp; Informatica, Amsterdam</span>
+<span class="c">#</span>
+<span class="c">#Author: Daniel M. Pelt</span>
+<span class="c">#Contact: D.M.Pelt@cwi.nl</span>
+<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span>
+<span class="c">#</span>
+<span class="c">#</span>
+<span class="c">#This file is part of the Python interface to the</span>
+<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox (&quot;ASTRA Toolbox&quot;).</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span>
+<span class="c">#it under the terms of the GNU General Public License as published by</span>
+<span class="c">#the Free Software Foundation, either version 3 of the License, or</span>
+<span class="c">#(at your option) any later version.</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span>
+<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
+<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
+<span class="c">#GNU General Public License for more details.</span>
+<span class="c">#</span>
+<span class="c">#You should have received a copy of the GNU General Public License</span>
+<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see &lt;http://www.gnu.org/licenses/&gt;.</span>
+<span class="c">#</span>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data2d_c</span> <span class="k">as</span> <span class="n">d</span>
+
+<div class="viewcode-block" id="clear"><a class="viewcode-back" href="../../data2d.html#astra.data2d.clear">[docs]</a><span class="k">def</span> <span class="nf">clear</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Clear all 2D data objects.&quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+</div>
+<div class="viewcode-block" id="delete"><a class="viewcode-back" href="../../data2d.html#astra.data2d.delete">[docs]</a><span class="k">def</span> <span class="nf">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Delete a 2D object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param ids: ID or list of ID&#39;s to delete.</span>
+<span class="sd"> :type ids: :class:`int` or :class:`list`</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="create"><a class="viewcode-back" href="../../data2d.html#astra.data2d.create">[docs]</a><span class="k">def</span> <span class="nf">create</span><span class="p">(</span><span class="n">datatype</span><span class="p">,</span> <span class="n">geometry</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create a 2D object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param datatype: Data object type, &#39;-vol&#39; or &#39;-sino&#39;.</span>
+<span class="sd"> :type datatype: :class:`string`</span>
+<span class="sd"> :param geometry: Volume or projection geometry.</span>
+<span class="sd"> :type geometry: :class:`dict`</span>
+<span class="sd"> :param data: Data to fill the constructed object with, either a scalar or array.</span>
+<span class="sd"> :type data: :class:`float` or :class:`numpy.ndarray`</span>
+<span class="sd"> :returns: :class:`int` -- the ID of the constructed object.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">datatype</span><span class="p">,</span><span class="n">geometry</span><span class="p">,</span><span class="n">data</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="store"><a class="viewcode-back" href="../../data2d.html#astra.data2d.store">[docs]</a><span class="k">def</span> <span class="nf">store</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">data</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Fill existing 2D object with data.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object to fill.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :param data: Data to fill the object with, either a scalar or array.</span>
+<span class="sd"> :type data: :class:`float` or :class:`numpy.ndarray`</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">store</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span>
+ </div>
+<div class="viewcode-block" id="get_geometry"><a class="viewcode-back" href="../../data2d.html#astra.data2d.get_geometry">[docs]</a><span class="k">def</span> <span class="nf">get_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get the geometry of a 2D object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`dict` -- The geometry of object with ID ``i``.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">get_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="change_geometry"><a class="viewcode-back" href="../../data2d.html#astra.data2d.change_geometry">[docs]</a><span class="k">def</span> <span class="nf">change_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">geom</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Change the geometry of a 2D object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :param geom: new geometry.</span>
+<span class="sd"> :type geom: :class:`dict`</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">change_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">geom</span><span class="p">)</span>
+ </div>
+<div class="viewcode-block" id="get"><a class="viewcode-back" href="../../data2d.html#astra.data2d.get">[docs]</a><span class="k">def</span> <span class="nf">get</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get a 2D object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object to get.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`numpy.ndarray` -- The object data.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="get_shared"><a class="viewcode-back" href="../../data2d.html#astra.data2d.get_shared">[docs]</a><span class="k">def</span> <span class="nf">get_shared</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get a 2D object with memory shared between the ASTRA toolbox and numpy array.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object to get.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`numpy.ndarray` -- The object data.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">get_shared</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="get_single"><a class="viewcode-back" href="../../data2d.html#astra.data2d.get_single">[docs]</a><span class="k">def</span> <span class="nf">get_single</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get a 2D object in single precision.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object to get.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`numpy.ndarray` -- The object data.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">get_single</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="info"><a class="viewcode-back" href="../../data2d.html#astra.data2d.info">[docs]</a><span class="k">def</span> <span class="nf">info</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Print info on 2D objects in memory.&quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">info</span><span class="p">()</span></div>
+</pre></div>
+
+ </div>
+ </div>
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+ <div class="body">
+
+ <h1>Source code for astra.data3d</h1><div class="highlight"><pre>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="c">#Copyright 2013 Centrum Wiskunde &amp; Informatica, Amsterdam</span>
+<span class="c">#</span>
+<span class="c">#Author: Daniel M. Pelt</span>
+<span class="c">#Contact: D.M.Pelt@cwi.nl</span>
+<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span>
+<span class="c">#</span>
+<span class="c">#</span>
+<span class="c">#This file is part of the Python interface to the</span>
+<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox (&quot;ASTRA Toolbox&quot;).</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span>
+<span class="c">#it under the terms of the GNU General Public License as published by</span>
+<span class="c">#the Free Software Foundation, either version 3 of the License, or</span>
+<span class="c">#(at your option) any later version.</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span>
+<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
+<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
+<span class="c">#GNU General Public License for more details.</span>
+<span class="c">#</span>
+<span class="c">#You should have received a copy of the GNU General Public License</span>
+<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see &lt;http://www.gnu.org/licenses/&gt;.</span>
+<span class="c">#</span>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data3d_c</span> <span class="k">as</span> <span class="n">d</span>
+
+<div class="viewcode-block" id="create"><a class="viewcode-back" href="../../data3d.html#astra.data3d.create">[docs]</a><span class="k">def</span> <span class="nf">create</span><span class="p">(</span><span class="n">datatype</span><span class="p">,</span><span class="n">geometry</span><span class="p">,</span><span class="n">data</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create a 3D object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param datatype: Data object type, &#39;-vol&#39; or &#39;-sino&#39;.</span>
+<span class="sd"> :type datatype: :class:`string`</span>
+<span class="sd"> :param geometry: Volume or projection geometry.</span>
+<span class="sd"> :type geometry: :class:`dict`</span>
+<span class="sd"> :param data: Data to fill the constructed object with, either a scalar or array.</span>
+<span class="sd"> :type data: :class:`float` or :class:`numpy.ndarray`</span>
+<span class="sd"> :returns: :class:`int` -- the ID of the constructed object.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">datatype</span><span class="p">,</span><span class="n">geometry</span><span class="p">,</span><span class="n">data</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="get"><a class="viewcode-back" href="../../data3d.html#astra.data3d.get">[docs]</a><span class="k">def</span> <span class="nf">get</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get a 3D object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object to get.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`numpy.ndarray` -- The object data.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="get_shared"><a class="viewcode-back" href="../../data3d.html#astra.data3d.get_shared">[docs]</a><span class="k">def</span> <span class="nf">get_shared</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get a 3D object with memory shared between the ASTRA toolbox and numpy array.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object to get.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`numpy.ndarray` -- The object data.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">get_shared</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="get_single"><a class="viewcode-back" href="../../data3d.html#astra.data3d.get_single">[docs]</a><span class="k">def</span> <span class="nf">get_single</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get a 3D object in single precision.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object to get.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`numpy.ndarray` -- The object data.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">g</span><span class="o">.</span><span class="n">get_single</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="store"><a class="viewcode-back" href="../../data3d.html#astra.data3d.store">[docs]</a><span class="k">def</span> <span class="nf">store</span><span class="p">(</span><span class="n">i</span><span class="p">,</span><span class="n">data</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Fill existing 3D object with data.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object to fill.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :param data: Data to fill the object with, either a scalar or array.</span>
+<span class="sd"> :type data: :class:`float` or :class:`numpy.ndarray`</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">store</span><span class="p">(</span><span class="n">i</span><span class="p">,</span><span class="n">data</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="dimensions"><a class="viewcode-back" href="../../data3d.html#astra.data3d.dimensions">[docs]</a><span class="k">def</span> <span class="nf">dimensions</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get dimensions of a 3D object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`tuple` -- dimensions of object with ID ``i``.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">dimensions</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="delete"><a class="viewcode-back" href="../../data3d.html#astra.data3d.delete">[docs]</a><span class="k">def</span> <span class="nf">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Delete a 2D object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param ids: ID or list of ID&#39;s to delete.</span>
+<span class="sd"> :type ids: :class:`int` or :class:`list`</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="clear"><a class="viewcode-back" href="../../data3d.html#astra.data3d.clear">[docs]</a><span class="k">def</span> <span class="nf">clear</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Clear all 3D data objects.&quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+</div>
+<div class="viewcode-block" id="info"><a class="viewcode-back" href="../../data3d.html#astra.data3d.info">[docs]</a><span class="k">def</span> <span class="nf">info</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Print info on 3D objects in memory.&quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">info</span><span class="p">()</span></div>
+</pre></div>
+
+ </div>
+ </div>
+ </div>
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+
+ <h1>Source code for astra.functions</h1><div class="highlight"><pre>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="c"># Copyright 2013 Centrum Wiskunde &amp; Informatica, Amsterdam</span>
+<span class="c">#</span>
+<span class="c"># Author: Daniel M. Pelt</span>
+<span class="c"># Contact: D.M.Pelt@cwi.nl</span>
+<span class="c"># Website: http://dmpelt.github.io/pyastratoolbox/</span>
+<span class="c">#</span>
+<span class="c">#</span>
+<span class="c"># This file is part of the Python interface to the</span>
+<span class="c"># All Scale Tomographic Reconstruction Antwerp Toolbox (&quot;ASTRA Toolbox&quot;).</span>
+<span class="c">#</span>
+<span class="c"># The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span>
+<span class="c"># it under the terms of the GNU General Public License as published by</span>
+<span class="c"># the Free Software Foundation, either version 3 of the License, or</span>
+<span class="c">#(at your option) any later version.</span>
+<span class="c">#</span>
+<span class="c"># The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span>
+<span class="c"># but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
+<span class="c"># MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
+<span class="c"># GNU General Public License for more details.</span>
+<span class="c">#</span>
+<span class="c"># You should have received a copy of the GNU General Public License</span>
+<span class="c"># along with the Python interface to the ASTRA Toolbox. If not, see &lt;http://www.gnu.org/licenses/&gt;.</span>
+<span class="c">#</span>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="sd">&quot;&quot;&quot;Additional functions for PyAstraToolbox.</span>
+
+<span class="sd">.. moduleauthor:: Daniel M. Pelt &lt;D.M.Pelt@cwi.nl&gt;</span>
+
+
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">creators</span> <span class="k">as</span> <span class="n">ac</span>
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="kn">as</span> <span class="nn">np</span>
+<span class="kn">from</span> <span class="nn">six.moves</span> <span class="kn">import</span> <span class="nb">range</span>
+
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data2d</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data3d</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">projector</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">algorithm</span>
+
+
+
+<div class="viewcode-block" id="clear"><a class="viewcode-back" href="../../functions.html#astra.functions.clear">[docs]</a><span class="k">def</span> <span class="nf">clear</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Clears all used memory of the ASTRA Toolbox.</span>
+
+<span class="sd"> .. note::</span>
+<span class="sd"> This is irreversible.</span>
+
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="n">data2d</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+ <span class="n">data3d</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+ <span class="n">projector</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+
+</div>
+<div class="viewcode-block" id="data_op"><a class="viewcode-back" href="../../functions.html#astra.functions.data_op">[docs]</a><span class="k">def</span> <span class="nf">data_op</span><span class="p">(</span><span class="n">op</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">scalar</span><span class="p">,</span> <span class="n">gpu_core</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Perform data operation on data.</span>
+
+<span class="sd"> :param op: Operation to perform.</span>
+<span class="sd"> :param data: Data to perform operation on.</span>
+<span class="sd"> :param scalar: Scalar argument to data operation.</span>
+<span class="sd"> :param gpu_core: GPU core to perform operation on.</span>
+<span class="sd"> :param mask: Optional mask.</span>
+
+<span class="sd"> &quot;&quot;&quot;</span>
+
+ <span class="n">cfg</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">astra_dict</span><span class="p">(</span><span class="s">&#39;DataOperation_CUDA&#39;</span><span class="p">)</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;Operation&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">op</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;Scalar&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">scalar</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;DataId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">mask</span> <span class="o">==</span> <span class="bp">None</span><span class="p">:</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;MaskId&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">mask</span>
+ <span class="n">cfg</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;GPUindex&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">gpu_core</span>
+ <span class="n">alg_id</span> <span class="o">=</span> <span class="n">algorithm</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span>
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span>
+ <span class="n">algorithm</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="add_noise_to_sino"><a class="viewcode-back" href="../../functions.html#astra.functions.add_noise_to_sino">[docs]</a><span class="k">def</span> <span class="nf">add_noise_to_sino</span><span class="p">(</span><span class="n">sinogram_in</span><span class="p">,</span> <span class="n">I0</span><span class="p">,</span> <span class="n">seed</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Adds Poisson noise to a sinogram.</span>
+
+<span class="sd"> :param sinogram_in: Sinogram to add noise to.</span>
+<span class="sd"> :type sinogram_in: :class:`numpy.ndarray`</span>
+<span class="sd"> :param I0: Background intensity. Lower values lead to higher noise.</span>
+<span class="sd"> :type I0: :class:`float`</span>
+<span class="sd"> :returns: :class:`numpy.ndarray` -- the sinogram with added noise.</span>
+
+<span class="sd"> &quot;&quot;&quot;</span>
+
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">seed</span><span class="o">==</span><span class="bp">None</span><span class="p">:</span>
+ <span class="n">curstate</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">get_state</span><span class="p">()</span>
+ <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="n">seed</span><span class="p">)</span>
+
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sinogram_in</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">sinogramRaw</span> <span class="o">=</span> <span class="n">sinogram_in</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">sinogramRaw</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">sinogram_in</span><span class="p">)</span>
+ <span class="n">max_sinogramRaw</span> <span class="o">=</span> <span class="n">sinogramRaw</span><span class="o">.</span><span class="n">max</span><span class="p">()</span>
+ <span class="n">sinogramRawScaled</span> <span class="o">=</span> <span class="n">sinogramRaw</span> <span class="o">/</span> <span class="n">max_sinogramRaw</span>
+ <span class="c"># to detector count</span>
+ <span class="n">sinogramCT</span> <span class="o">=</span> <span class="n">I0</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">sinogramRawScaled</span><span class="p">)</span>
+ <span class="c"># add poison noise</span>
+ <span class="n">sinogramCT_C</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="n">sinogramCT</span><span class="p">)</span>
+ <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">sinogramCT_C</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]):</span>
+ <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">sinogramCT_C</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]):</span>
+ <span class="n">sinogramCT_C</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">poisson</span><span class="p">(</span><span class="n">sinogramCT</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">])</span>
+ <span class="c"># to density</span>
+ <span class="n">sinogramCT_D</span> <span class="o">=</span> <span class="n">sinogramCT_C</span> <span class="o">/</span> <span class="n">I0</span>
+ <span class="n">sinogram_out</span> <span class="o">=</span> <span class="o">-</span><span class="n">max_sinogramRaw</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">sinogramCT_D</span><span class="p">)</span>
+
+ <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sinogram_in</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+ <span class="n">at</span><span class="o">.</span><span class="n">data2d</span><span class="o">.</span><span class="n">store</span><span class="p">(</span><span class="n">sinogram_in</span><span class="p">,</span> <span class="n">sinogram_out</span><span class="p">)</span>
+
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">seed</span><span class="o">==</span><span class="bp">None</span><span class="p">:</span>
+ <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">set_state</span><span class="p">(</span><span class="n">curstate</span><span class="p">)</span>
+
+ <span class="k">return</span> <span class="n">sinogram_out</span>
+</div>
+<div class="viewcode-block" id="move_vol_geom"><a class="viewcode-back" href="../../functions.html#astra.functions.move_vol_geom">[docs]</a><span class="k">def</span> <span class="nf">move_vol_geom</span><span class="p">(</span><span class="n">geom</span><span class="p">,</span> <span class="n">pos</span><span class="p">,</span> <span class="n">is_relative</span><span class="o">=</span><span class="bp">False</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Moves center of volume geometry to new position.</span>
+
+<span class="sd"> :param geom: Input volume geometry</span>
+<span class="sd"> :type geom: :class:`dict`</span>
+<span class="sd"> :param pos: Tuple (x,y[,z]) for new position, with the center of the image at (0,0[,0])</span>
+<span class="sd"> :type pos: :class:`tuple`</span>
+<span class="sd"> :param is_relative: Whether new position is relative to the old position</span>
+<span class="sd"> :type is_relative: :class:`bool`</span>
+<span class="sd"> :returns: :class:`dict` -- Volume geometry with the new center</span>
+<span class="sd"> &quot;&quot;&quot;</span>
+
+ <span class="n">ret_geom</span> <span class="o">=</span> <span class="n">geom</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
+
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">is_relative</span><span class="p">:</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinX&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">geom</span><span class="p">[</span><span class="s">&#39;GridColCount&#39;</span><span class="p">]</span><span class="o">/</span><span class="mf">2.</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxX&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;GridColCount&#39;</span><span class="p">]</span><span class="o">/</span><span class="mf">2.</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinY&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">geom</span><span class="p">[</span><span class="s">&#39;GridRowCount&#39;</span><span class="p">]</span><span class="o">/</span><span class="mf">2.</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxY&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;GridRowCount&#39;</span><span class="p">]</span><span class="o">/</span><span class="mf">2.</span>
+ <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">pos</span><span class="p">)</span><span class="o">&gt;</span><span class="mi">2</span><span class="p">:</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinZ&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">geom</span><span class="p">[</span><span class="s">&#39;GridSliceCount&#39;</span><span class="p">]</span><span class="o">/</span><span class="mf">2.</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxZ&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;GridSliceCount&#39;</span><span class="p">]</span><span class="o">/</span><span class="mf">2.</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinX&#39;</span><span class="p">]</span> <span class="o">+=</span> <span class="n">pos</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxX&#39;</span><span class="p">]</span> <span class="o">+=</span> <span class="n">pos</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinY&#39;</span><span class="p">]</span> <span class="o">+=</span> <span class="n">pos</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxY&#39;</span><span class="p">]</span> <span class="o">+=</span> <span class="n">pos</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+ <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">pos</span><span class="p">)</span><span class="o">&gt;</span><span class="mi">2</span><span class="p">:</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMinZ&#39;</span><span class="p">]</span> <span class="o">+=</span> <span class="n">pos</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
+ <span class="n">ret_geom</span><span class="p">[</span><span class="s">&#39;option&#39;</span><span class="p">][</span><span class="s">&#39;WindowMaxZ&#39;</span><span class="p">]</span> <span class="o">+=</span> <span class="n">pos</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
+ <span class="k">return</span> <span class="n">ret_geom</span>
+
+</div>
+<div class="viewcode-block" id="geom_size"><a class="viewcode-back" href="../../functions.html#astra.functions.geom_size">[docs]</a><span class="k">def</span> <span class="nf">geom_size</span><span class="p">(</span><span class="n">geom</span><span class="p">,</span> <span class="n">dim</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Returns the size of a volume or sinogram, based on the projection or volume geometry.</span>
+
+<span class="sd"> :param geom: Geometry to calculate size from</span>
+<span class="sd"> :type geometry: :class:`dict`</span>
+<span class="sd"> :param dim: Optional axis index to return</span>
+<span class="sd"> :type dim: :class:`int`</span>
+<span class="sd"> &quot;&quot;&quot;</span>
+
+ <span class="k">if</span> <span class="s">&#39;GridSliceCount&#39;</span> <span class="ow">in</span> <span class="n">geom</span><span class="p">:</span>
+ <span class="c"># 3D Volume geometry?</span>
+ <span class="n">s</span> <span class="o">=</span> <span class="p">(</span><span class="n">geom</span><span class="p">[</span><span class="s">&#39;GridSliceCount&#39;</span><span class="p">],</span> <span class="n">geom</span><span class="p">[</span>
+ <span class="s">&#39;GridRowCount&#39;</span><span class="p">],</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;GridColCount&#39;</span><span class="p">])</span>
+ <span class="k">elif</span> <span class="s">&#39;GridColCount&#39;</span> <span class="ow">in</span> <span class="n">geom</span><span class="p">:</span>
+ <span class="c"># 2D Volume geometry?</span>
+ <span class="n">s</span> <span class="o">=</span> <span class="p">(</span><span class="n">geom</span><span class="p">[</span><span class="s">&#39;GridRowCount&#39;</span><span class="p">],</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;GridColCount&#39;</span><span class="p">])</span>
+ <span class="k">elif</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s">&#39;parallel&#39;</span> <span class="ow">or</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s">&#39;fanflat&#39;</span><span class="p">:</span>
+ <span class="n">s</span> <span class="o">=</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">geom</span><span class="p">[</span><span class="s">&#39;ProjectionAngles&#39;</span><span class="p">]),</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;DetectorCount&#39;</span><span class="p">])</span>
+ <span class="k">elif</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s">&#39;parallel3d&#39;</span> <span class="ow">or</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s">&#39;cone&#39;</span><span class="p">:</span>
+ <span class="n">s</span> <span class="o">=</span> <span class="p">(</span><span class="n">geom</span><span class="p">[</span><span class="s">&#39;DetectorRowCount&#39;</span><span class="p">],</span> <span class="nb">len</span><span class="p">(</span>
+ <span class="n">geom</span><span class="p">[</span><span class="s">&#39;ProjectionAngles&#39;</span><span class="p">]),</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;DetectorColCount&#39;</span><span class="p">])</span>
+ <span class="k">elif</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s">&#39;fanflat_vec&#39;</span><span class="p">:</span>
+ <span class="n">s</span> <span class="o">=</span> <span class="p">(</span><span class="n">geom</span><span class="p">[</span><span class="s">&#39;Vectors&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;DetectorCount&#39;</span><span class="p">])</span>
+ <span class="k">elif</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s">&#39;parallel3d_vec&#39;</span> <span class="ow">or</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s">&#39;cone_vec&#39;</span><span class="p">:</span>
+ <span class="n">s</span> <span class="o">=</span> <span class="p">(</span><span class="n">geom</span><span class="p">[</span><span class="s">&#39;DetectorRowCount&#39;</span><span class="p">],</span> <span class="n">geom</span><span class="p">[</span>
+ <span class="s">&#39;Vectors&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">geom</span><span class="p">[</span><span class="s">&#39;DetectorColCount&#39;</span><span class="p">])</span>
+
+ <span class="k">if</span> <span class="n">dim</span> <span class="o">!=</span> <span class="bp">None</span><span class="p">:</span>
+ <span class="n">s</span> <span class="o">=</span> <span class="n">s</span><span class="p">[</span><span class="n">dim</span><span class="p">]</span>
+
+ <span class="k">return</span> <span class="n">s</span>
+
+</div>
+<div class="viewcode-block" id="geom_2vec"><a class="viewcode-back" href="../../functions.html#astra.functions.geom_2vec">[docs]</a><span class="k">def</span> <span class="nf">geom_2vec</span><span class="p">(</span><span class="n">proj_geom</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Returns a vector-based projection geometry from a basic projection geometry.</span>
+
+<span class="sd"> :param proj_geom: Projection geometry to convert</span>
+<span class="sd"> :type proj_geom: :class:`dict`</span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">if</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s">&#39;fanflat&#39;</span><span class="p">:</span>
+ <span class="n">angles</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;ProjectionAngles&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="nb">len</span><span class="p">(</span><span class="n">angles</span><span class="p">),</span> <span class="mi">6</span><span class="p">))</span>
+ <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">angles</span><span class="p">)):</span>
+
+ <span class="c"># source</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DistanceOriginSource&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DistanceOriginSource&#39;</span><span class="p">]</span>
+
+ <span class="c"># center of detector</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DistanceOriginDetector&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">3</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DistanceOriginDetector&#39;</span><span class="p">]</span>
+
+ <span class="c"># vector from detector pixel 0 to 1</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">4</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorWidth&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">5</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorWidth&#39;</span><span class="p">]</span>
+ <span class="n">proj_geom_out</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_proj_geom</span><span class="p">(</span>
+ <span class="s">&#39;fanflat_vec&#39;</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorCount&#39;</span><span class="p">],</span> <span class="n">vectors</span><span class="p">)</span>
+
+ <span class="k">elif</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s">&#39;cone&#39;</span><span class="p">:</span>
+ <span class="n">angles</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;ProjectionAngles&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="nb">len</span><span class="p">(</span><span class="n">angles</span><span class="p">),</span> <span class="mi">12</span><span class="p">))</span>
+ <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">angles</span><span class="p">)):</span>
+ <span class="c"># source</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DistanceOriginSource&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DistanceOriginSource&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+
+ <span class="c"># center of detector</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">3</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DistanceOriginDetector&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">4</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DistanceOriginDetector&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">5</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+
+ <span class="c"># vector from detector pixel (0,0) to (0,1)</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">6</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorSpacingX&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">7</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorSpacingX&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">8</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+
+ <span class="c"># vector from detector pixel (0,0) to (1,0)</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">9</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">10</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">11</span><span class="p">]</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorSpacingY&#39;</span><span class="p">]</span>
+
+ <span class="n">proj_geom_out</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_proj_geom</span><span class="p">(</span>
+ <span class="s">&#39;cone_vec&#39;</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorRowCount&#39;</span><span class="p">],</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorColCount&#39;</span><span class="p">],</span> <span class="n">vectors</span><span class="p">)</span>
+
+ <span class="c"># PARALLEL</span>
+ <span class="k">elif</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s">&#39;parallel3d&#39;</span><span class="p">:</span>
+ <span class="n">angles</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;ProjectionAngles&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="nb">len</span><span class="p">(</span><span class="n">angles</span><span class="p">),</span> <span class="mi">12</span><span class="p">))</span>
+ <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">angles</span><span class="p">)):</span>
+
+ <span class="c"># ray direction</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+
+ <span class="c"># center of detector</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">3</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">4</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">5</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+
+ <span class="c"># vector from detector pixel (0,0) to (0,1)</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">6</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorSpacingX&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">7</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorSpacingX&#39;</span><span class="p">]</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">8</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+
+ <span class="c"># vector from detector pixel (0,0) to (1,0)</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">9</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">10</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+ <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">11</span><span class="p">]</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorSpacingY&#39;</span><span class="p">]</span>
+
+ <span class="n">proj_geom_out</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_proj_geom</span><span class="p">(</span>
+ <span class="s">&#39;parallel3d_vec&#39;</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorRowCount&#39;</span><span class="p">],</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;DetectorColCount&#39;</span><span class="p">],</span> <span class="n">vectors</span><span class="p">)</span>
+
+ <span class="k">else</span><span class="p">:</span>
+ <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+ <span class="s">&#39;No suitable vector geometry found for type: &#39;</span> <span class="o">+</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">&#39;type&#39;</span><span class="p">])</span>
+ <span class="k">return</span> <span class="n">proj_geom_out</span></div>
+</pre></div>
+
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+ <h1>Source code for astra.matlab</h1><div class="highlight"><pre>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="c">#Copyright 2013 Centrum Wiskunde &amp; Informatica, Amsterdam</span>
+<span class="c">#</span>
+<span class="c">#Author: Daniel M. Pelt</span>
+<span class="c">#Contact: D.M.Pelt@cwi.nl</span>
+<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span>
+<span class="c">#</span>
+<span class="c">#</span>
+<span class="c">#This file is part of the Python interface to the</span>
+<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox (&quot;ASTRA Toolbox&quot;).</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span>
+<span class="c">#it under the terms of the GNU General Public License as published by</span>
+<span class="c">#the Free Software Foundation, either version 3 of the License, or</span>
+<span class="c">#(at your option) any later version.</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span>
+<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
+<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
+<span class="c">#GNU General Public License for more details.</span>
+<span class="c">#</span>
+<span class="c">#You should have received a copy of the GNU General Public License</span>
+<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see &lt;http://www.gnu.org/licenses/&gt;.</span>
+<span class="c">#</span>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="sd">&quot;&quot;&quot;This module implements a MATLAB-like interface to the ASTRA Toolbox.</span>
+
+<span class="sd">Note that all functions are called with a :class:`string` as the first</span>
+<span class="sd">argument, specifying the operation to perform. This un-pythonic way</span>
+<span class="sd">is used to make transitioning from MATLAB code to Python code easier, as</span>
+<span class="sd">the MATLAB interface uses the same type of method calling.</span>
+
+<span class="sd">After an initial ``import astra``, these functions can be accessed in the</span>
+<span class="sd">``astra.m`` module.</span>
+
+<span class="sd">&quot;&quot;&quot;</span>
+
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">astra_c</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data2d_c</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data3d_c</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">projector_c</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">algorithm_c</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">matrix_c</span>
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="kn">as</span> <span class="nn">np</span>
+
+
+<div class="viewcode-block" id="astra"><a class="viewcode-back" href="../../matlab.html#astra.matlab.astra">[docs]</a><span class="k">def</span> <span class="nf">astra</span><span class="p">(</span><span class="n">command</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;MATLAB-like interface to the :mod:`astra.astra` module</span>
+<span class="sd"> </span>
+<span class="sd"> For example:</span>
+<span class="sd"> </span>
+<span class="sd"> ``astra.m.astra(&#39;use_cuda&#39;)`` -- Check if CUDA is enabled.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">astra_c</span><span class="p">,</span> <span class="n">command</span><span class="p">)(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="data2d"><a class="viewcode-back" href="../../matlab.html#astra.matlab.data2d">[docs]</a><span class="k">def</span> <span class="nf">data2d</span><span class="p">(</span><span class="n">command</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;MATLAB-like interface to the :mod:`astra.data2d` module</span>
+<span class="sd"> </span>
+<span class="sd"> For example:</span>
+<span class="sd"> </span>
+<span class="sd"> ``astra.m.data2d(&#39;create&#39;,type,geometry,data)`` -- Create a 2D object.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">data2d_c</span><span class="p">,</span> <span class="n">command</span><span class="p">)(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="data3d"><a class="viewcode-back" href="../../matlab.html#astra.matlab.data3d">[docs]</a><span class="k">def</span> <span class="nf">data3d</span><span class="p">(</span><span class="n">command</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;MATLAB-like interface to the :mod:`astra.data3d` module</span>
+<span class="sd"> </span>
+<span class="sd"> For example:</span>
+<span class="sd"> </span>
+<span class="sd"> ``astra.m.data3d(&#39;get&#39;,i)`` -- Get 3D object data.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">data3d_c</span><span class="p">,</span> <span class="n">command</span><span class="p">)(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="projector"><a class="viewcode-back" href="../../matlab.html#astra.matlab.projector">[docs]</a><span class="k">def</span> <span class="nf">projector</span><span class="p">(</span><span class="n">command</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;MATLAB-like interface to the :mod:`astra.projector` module</span>
+<span class="sd"> </span>
+<span class="sd"> For example:</span>
+<span class="sd"> </span>
+<span class="sd"> ``astra.m.projector(&#39;volume_geometry&#39;,i)`` -- Get volume geometry.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">projector_c</span><span class="p">,</span> <span class="n">command</span><span class="p">)(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="matrix"><a class="viewcode-back" href="../../matlab.html#astra.matlab.matrix">[docs]</a><span class="k">def</span> <span class="nf">matrix</span><span class="p">(</span><span class="n">command</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;MATLAB-like interface to the :mod:`astra.matrix` module</span>
+<span class="sd"> </span>
+<span class="sd"> For example:</span>
+<span class="sd"> </span>
+<span class="sd"> ``astra.m.matrix(&#39;delete&#39;,i)`` -- Delete a matrix.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">matrix_c</span><span class="p">,</span> <span class="n">command</span><span class="p">)(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="algorithm"><a class="viewcode-back" href="../../matlab.html#astra.matlab.algorithm">[docs]</a><span class="k">def</span> <span class="nf">algorithm</span><span class="p">(</span><span class="n">command</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;MATLAB-like interface to the :mod:`astra.algorithm` module</span>
+<span class="sd"> </span>
+<span class="sd"> For example:</span>
+<span class="sd"> </span>
+<span class="sd"> ``astra.m.algorithm(&#39;run&#39;,i,1000)`` -- Run an algorithm with 1000 iterations.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">if</span> <span class="n">command</span> <span class="o">==</span> <span class="s">&#39;iterate&#39;</span><span class="p">:</span>
+ <span class="n">command</span> <span class="o">=</span> <span class="s">&#39;run&#39;</span>
+ <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">algorithm_c</span><span class="p">,</span> <span class="n">command</span><span class="p">)(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span></div>
+</pre></div>
+
+ </div>
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+
+ <h1>Source code for astra.matrix</h1><div class="highlight"><pre>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="c">#Copyright 2013 Centrum Wiskunde &amp; Informatica, Amsterdam</span>
+<span class="c">#</span>
+<span class="c">#Author: Daniel M. Pelt</span>
+<span class="c">#Contact: D.M.Pelt@cwi.nl</span>
+<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span>
+<span class="c">#</span>
+<span class="c">#</span>
+<span class="c">#This file is part of the Python interface to the</span>
+<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox (&quot;ASTRA Toolbox&quot;).</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span>
+<span class="c">#it under the terms of the GNU General Public License as published by</span>
+<span class="c">#the Free Software Foundation, either version 3 of the License, or</span>
+<span class="c">#(at your option) any later version.</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span>
+<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
+<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
+<span class="c">#GNU General Public License for more details.</span>
+<span class="c">#</span>
+<span class="c">#You should have received a copy of the GNU General Public License</span>
+<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see &lt;http://www.gnu.org/licenses/&gt;.</span>
+<span class="c">#</span>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">matrix_c</span> <span class="k">as</span> <span class="n">m</span>
+
+<div class="viewcode-block" id="delete"><a class="viewcode-back" href="../../matrix.html#astra.matrix.delete">[docs]</a><span class="k">def</span> <span class="nf">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Delete a matrix object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param ids: ID or list of ID&#39;s to delete.</span>
+<span class="sd"> :type ids: :class:`int` or :class:`list`</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="clear"><a class="viewcode-back" href="../../matrix.html#astra.matrix.clear">[docs]</a><span class="k">def</span> <span class="nf">clear</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Clear all matrix objects.&quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+</div>
+<div class="viewcode-block" id="create"><a class="viewcode-back" href="../../matrix.html#astra.matrix.create">[docs]</a><span class="k">def</span> <span class="nf">create</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create matrix object with data.</span>
+<span class="sd"> </span>
+<span class="sd"> :param data: Data to fill the created object with.</span>
+<span class="sd"> :type data: :class:`scipy.sparse.csr_matrix`</span>
+<span class="sd"> :returns: :class:`int` -- the ID of the constructed object.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+
+ </div>
+<div class="viewcode-block" id="store"><a class="viewcode-back" href="../../matrix.html#astra.matrix.store">[docs]</a><span class="k">def</span> <span class="nf">store</span><span class="p">(</span><span class="n">i</span><span class="p">,</span><span class="n">data</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Fill existing matrix object with data.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object to fill.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :param data: Data to fill the object with.</span>
+<span class="sd"> :type data: :class:`scipy.sparse.csr_matrix`</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">store</span><span class="p">(</span><span class="n">i</span><span class="p">,</span><span class="n">data</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="get_size"><a class="viewcode-back" href="../../matrix.html#astra.matrix.get_size">[docs]</a><span class="k">def</span> <span class="nf">get_size</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get matrix dimensions.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`tuple` -- matrix dimensions.</span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">get_size</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+ </div>
+<div class="viewcode-block" id="get"><a class="viewcode-back" href="../../matrix.html#astra.matrix.get">[docs]</a><span class="k">def</span> <span class="nf">get</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get a matrix object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of object to get.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`scipy.sparse.csr_matrix` -- The object data.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+</div>
+<div class="viewcode-block" id="info"><a class="viewcode-back" href="../../matrix.html#astra.matrix.info">[docs]</a><span class="k">def</span> <span class="nf">info</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Print info on matrix objects in memory.&quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">info</span><span class="p">()</span>
+
+ </div>
+</pre></div>
+
+ </div>
+ </div>
+ </div>
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+ <input type="hidden" name="area" value="default" />
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+ <p class="searchtip" style="font-size: 90%">
+ Enter search terms or a module, class or function name.
+ </p>
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+ <li><a href="../index.html" >Module code</a> &raquo;</li>
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+ ga('send', 'pageview');
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+</html> \ No newline at end of file
diff --git a/python/docSRC/_build/html/_modules/astra/projector.html b/python/docSRC/_build/html/_modules/astra/projector.html
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+ >modules</a> |</li>
+ <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> &raquo;</li>
+ <li><a href="../index.html" accesskey="U">Module code</a> &raquo;</li>
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+ <div class="documentwrapper">
+ <div class="bodywrapper">
+ <div class="body">
+
+ <h1>Source code for astra.projector</h1><div class="highlight"><pre>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="c">#Copyright 2013 Centrum Wiskunde &amp; Informatica, Amsterdam</span>
+<span class="c">#</span>
+<span class="c">#Author: Daniel M. Pelt</span>
+<span class="c">#Contact: D.M.Pelt@cwi.nl</span>
+<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span>
+<span class="c">#</span>
+<span class="c">#</span>
+<span class="c">#This file is part of the Python interface to the</span>
+<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox (&quot;ASTRA Toolbox&quot;).</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span>
+<span class="c">#it under the terms of the GNU General Public License as published by</span>
+<span class="c">#the Free Software Foundation, either version 3 of the License, or</span>
+<span class="c">#(at your option) any later version.</span>
+<span class="c">#</span>
+<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span>
+<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
+<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
+<span class="c">#GNU General Public License for more details.</span>
+<span class="c">#</span>
+<span class="c">#You should have received a copy of the GNU General Public License</span>
+<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see &lt;http://www.gnu.org/licenses/&gt;.</span>
+<span class="c">#</span>
+<span class="c">#-----------------------------------------------------------------------</span>
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">projector_c</span> <span class="k">as</span> <span class="n">p</span>
+
+<div class="viewcode-block" id="create"><a class="viewcode-back" href="../../projector.html#astra.projector.create">[docs]</a><span class="k">def</span> <span class="nf">create</span><span class="p">(</span><span class="n">config</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Create projector object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param config: Projector options.</span>
+<span class="sd"> :type config: :class:`dict`</span>
+<span class="sd"> :returns: :class:`int` -- the ID of the constructed object.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">config</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="delete"><a class="viewcode-back" href="../../projector.html#astra.projector.delete">[docs]</a><span class="k">def</span> <span class="nf">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Delete a projector object.</span>
+<span class="sd"> </span>
+<span class="sd"> :param ids: ID or list of ID&#39;s to delete.</span>
+<span class="sd"> :type ids: :class:`int` or :class:`list`</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="clear"><a class="viewcode-back" href="../../projector.html#astra.projector.clear">[docs]</a><span class="k">def</span> <span class="nf">clear</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Clear all projector objects.&quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+
+</div>
+<div class="viewcode-block" id="info"><a class="viewcode-back" href="../../projector.html#astra.projector.info">[docs]</a><span class="k">def</span> <span class="nf">info</span><span class="p">():</span>
+ <span class="sd">&quot;&quot;&quot;Print info on projector objects in memory.&quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">info</span><span class="p">()</span>
+</div>
+<div class="viewcode-block" id="projection_geometry"><a class="viewcode-back" href="../../projector.html#astra.projector.projection_geometry">[docs]</a><span class="k">def</span> <span class="nf">projection_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get projection geometry of a projector.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of projector.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`dict` -- projection geometry</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">projection_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="volume_geometry"><a class="viewcode-back" href="../../projector.html#astra.projector.volume_geometry">[docs]</a><span class="k">def</span> <span class="nf">volume_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get volume geometry of a projector.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of projector.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`dict` -- volume geometry</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">volume_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="weights_single_ray"><a class="viewcode-back" href="../../projector.html#astra.projector.weights_single_ray">[docs]</a><span class="k">def</span> <span class="nf">weights_single_ray</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">projection_index</span><span class="p">,</span> <span class="n">detector_index</span><span class="p">):</span>
+ <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">weights_single_ray</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">projection_index</span><span class="p">,</span> <span class="n">detector_index</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="weights_projection"><a class="viewcode-back" href="../../projector.html#astra.projector.weights_projection">[docs]</a><span class="k">def</span> <span class="nf">weights_projection</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">projection_index</span><span class="p">):</span>
+ <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">weights_projection</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">projection_index</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="splat"><a class="viewcode-back" href="../../projector.html#astra.projector.splat">[docs]</a><span class="k">def</span> <span class="nf">splat</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">row</span><span class="p">,</span> <span class="n">col</span><span class="p">):</span>
+ <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">splat</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">row</span><span class="p">,</span> <span class="n">col</span><span class="p">)</span>
+
+</div>
+<div class="viewcode-block" id="matrix"><a class="viewcode-back" href="../../projector.html#astra.projector.matrix">[docs]</a><span class="k">def</span> <span class="nf">matrix</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+ <span class="sd">&quot;&quot;&quot;Get sparse matrix of a projector.</span>
+<span class="sd"> </span>
+<span class="sd"> :param i: ID of projector.</span>
+<span class="sd"> :type i: :class:`int`</span>
+<span class="sd"> :returns: :class:`int` -- ID of sparse matrix.</span>
+<span class="sd"> </span>
+<span class="sd"> &quot;&quot;&quot;</span>
+ <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">matrix</span><span class="p">(</span><span class="n">i</span><span class="p">)</span></div>
+</pre></div>
+
+ </div>
+ </div>
+ </div>
+ <div class="sphinxsidebar">
+ <div class="sphinxsidebarwrapper">
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+ Enter search terms or a module, class or function name.
+ </p>
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+ URL_ROOT: '../',
+ VERSION: '1.6',
+ COLLAPSE_INDEX: false,
+ FILE_SUFFIX: '.html',
+ HAS_SOURCE: true
+ };
+ </script>
+ <script type="text/javascript" src="../_static/jquery.js"></script>
+ <script type="text/javascript" src="../_static/underscore.js"></script>
+ <script type="text/javascript" src="../_static/doctools.js"></script>
+ <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
+ <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../index.html" />
+ </head>
+ <body>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px">
+ <a href="../genindex.html" title="General Index"
+ accesskey="I">index</a></li>
+ <li class="right" >
+ <a href="../py-modindex.html" title="Python Module Index"
+ >modules</a> |</li>
+ <li><a href="../index.html">PyASTRAToolbox 1.6 documentation</a> &raquo;</li>
+ </ul>
+ </div>
+
+ <div class="document">
+ <div class="documentwrapper">
+ <div class="bodywrapper">
+ <div class="body">
+
+ <h1>All modules for which code is available</h1>
+<ul><li><a href="astra/ASTRAProjector.html">astra.ASTRAProjector</a></li>
+<li><a href="astra/algorithm.html">astra.algorithm</a></li>
+<li><a href="astra/astra.html">astra.astra</a></li>
+<li><a href="astra/creators.html">astra.creators</a></li>
+<li><a href="astra/data2d.html">astra.data2d</a></li>
+<li><a href="astra/data3d.html">astra.data3d</a></li>
+<li><a href="astra/functions.html">astra.functions</a></li>
+<li><a href="astra/matlab.html">astra.matlab</a></li>
+<li><a href="astra/matrix.html">astra.matrix</a></li>
+<li><a href="astra/projector.html">astra.projector</a></li>
+</ul>
+
+ </div>
+ </div>
+ </div>
+ <div class="sphinxsidebar">
+ <div class="sphinxsidebarwrapper">
+<div id="searchbox" style="display: none">
+ <h3>Quick search</h3>
+ <form class="search" action="../search.html" method="get">
+ <input type="text" name="q" />
+ <input type="submit" value="Go" />
+ <input type="hidden" name="check_keywords" value="yes" />
+ <input type="hidden" name="area" value="default" />
+ </form>
+ <p class="searchtip" style="font-size: 90%">
+ Enter search terms or a module, class or function name.
+ </p>
+</div>
+<script type="text/javascript">$('#searchbox').show(0);</script>
+ </div>
+ </div>
+ <div class="clearer"></div>
+ </div>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px">
+ <a href="../genindex.html" title="General Index"
+ >index</a></li>
+ <li class="right" >
+ <a href="../py-modindex.html" title="Python Module Index"
+ >modules</a> |</li>
+ <li><a href="../index.html">PyASTRAToolbox 1.6 documentation</a> &raquo;</li>
+ </ul>
+ </div>
+
+ <div class="footer">
+ &copy; Copyright 2013, Centrum Wiskunde &amp; Informatica, Amsterdam.
+ Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
+ </div>
+<script>
+ (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
+ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
+ m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
+ })(window,document,'script','//www.google-analytics.com/analytics.js','ga');
+
+ ga('create', 'UA-40340335-1', 'dmpelt.github.io');
+ ga('send', 'pageview');
+
+</script>
+
+ </body>
+</html> \ No newline at end of file
diff --git a/python/docSRC/_build/html/_sources/ASTRAProjector.txt b/python/docSRC/_build/html/_sources/ASTRAProjector.txt
new file mode 100644
index 0000000..1c267e3
--- /dev/null
+++ b/python/docSRC/_build/html/_sources/ASTRAProjector.txt
@@ -0,0 +1,8 @@
+Helper class: the :mod:`ASTRAProjector` module
+==============================================
+
+.. automodule:: astra.ASTRAProjector
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/_build/html/_sources/algorithm.txt b/python/docSRC/_build/html/_sources/algorithm.txt
new file mode 100644
index 0000000..83752bd
--- /dev/null
+++ b/python/docSRC/_build/html/_sources/algorithm.txt
@@ -0,0 +1,8 @@
+Algorithms: the :mod:`algorithm` module
+=======================================
+
+.. automodule:: astra.algorithm
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/_build/html/_sources/astra.txt b/python/docSRC/_build/html/_sources/astra.txt
new file mode 100644
index 0000000..5d5fdf0
--- /dev/null
+++ b/python/docSRC/_build/html/_sources/astra.txt
@@ -0,0 +1,8 @@
+Additional ASTRA methods: the :mod:`astra` module
+========================================================
+
+.. automodule:: astra.astra
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/_build/html/_sources/creators.txt b/python/docSRC/_build/html/_sources/creators.txt
new file mode 100644
index 0000000..d6249c3
--- /dev/null
+++ b/python/docSRC/_build/html/_sources/creators.txt
@@ -0,0 +1,8 @@
+Creation of objects: the :mod:`creators` module
+===============================================
+
+.. automodule:: astra.creators
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/_build/html/_sources/data2d.txt b/python/docSRC/_build/html/_sources/data2d.txt
new file mode 100644
index 0000000..342cbec
--- /dev/null
+++ b/python/docSRC/_build/html/_sources/data2d.txt
@@ -0,0 +1,8 @@
+2D data objects: the :mod:`data2d` module
+=========================================
+
+.. automodule:: astra.data2d
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/_build/html/_sources/data3d.txt b/python/docSRC/_build/html/_sources/data3d.txt
new file mode 100644
index 0000000..5b7de23
--- /dev/null
+++ b/python/docSRC/_build/html/_sources/data3d.txt
@@ -0,0 +1,8 @@
+3D data objects: the :mod:`data3d` module
+=========================================
+
+.. automodule:: astra.data3d
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/_build/html/_sources/functions.txt b/python/docSRC/_build/html/_sources/functions.txt
new file mode 100644
index 0000000..749eb27
--- /dev/null
+++ b/python/docSRC/_build/html/_sources/functions.txt
@@ -0,0 +1,8 @@
+Additional functions: the :mod:`functions` module
+=================================================
+
+.. automodule:: astra.functions
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/_build/html/_sources/index.txt b/python/docSRC/_build/html/_sources/index.txt
new file mode 100644
index 0000000..8d17a4a
--- /dev/null
+++ b/python/docSRC/_build/html/_sources/index.txt
@@ -0,0 +1,34 @@
+.. .. documentation master file, created by
+ sphinx-quickstart on Wed Mar 13 16:36:32 2013.
+ You can adapt this file completely to your liking, but it should at least
+ contain the root `toctree` directive.
+
+Welcome to PyASTRAToolbox's documentation!
+==========================================
+
+Contents:
+
+.. toctree::
+ :maxdepth: 4
+
+ data2d
+ data3d
+ projector
+ algorithm
+ matrix
+ creators
+ functions
+ ASTRAProjector
+ matlab
+ astra
+.. astra
+.. builder
+
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`
+
diff --git a/python/docSRC/_build/html/_sources/matlab.txt b/python/docSRC/_build/html/_sources/matlab.txt
new file mode 100644
index 0000000..fb7033e
--- /dev/null
+++ b/python/docSRC/_build/html/_sources/matlab.txt
@@ -0,0 +1,8 @@
+MATLAB compatibility interface: the :mod:`matlab` module
+========================================================
+
+.. automodule:: astra.matlab
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/_build/html/_sources/matrix.txt b/python/docSRC/_build/html/_sources/matrix.txt
new file mode 100644
index 0000000..6f11d8a
--- /dev/null
+++ b/python/docSRC/_build/html/_sources/matrix.txt
@@ -0,0 +1,8 @@
+Sparse matrices: the :mod:`matrix` module
+=========================================
+
+.. automodule:: astra.matrix
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/_build/html/_sources/projector.txt b/python/docSRC/_build/html/_sources/projector.txt
new file mode 100644
index 0000000..b0854e8
--- /dev/null
+++ b/python/docSRC/_build/html/_sources/projector.txt
@@ -0,0 +1,8 @@
+Projector object: the :mod:`projector` module
+=============================================
+
+.. automodule:: astra.projector
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/_build/html/_static/ajax-loader.gif b/python/docSRC/_build/html/_static/ajax-loader.gif
new file mode 100644
index 0000000..61faf8c
--- /dev/null
+++ b/python/docSRC/_build/html/_static/ajax-loader.gif
Binary files differ
diff --git a/python/docSRC/_build/html/_static/basic.css b/python/docSRC/_build/html/_static/basic.css
new file mode 100644
index 0000000..967e36c
--- /dev/null
+++ b/python/docSRC/_build/html/_static/basic.css
@@ -0,0 +1,537 @@
+/*
+ * basic.css
+ * ~~~~~~~~~
+ *
+ * Sphinx stylesheet -- basic theme.
+ *
+ * :copyright: Copyright 2007-2014 by the Sphinx team, see AUTHORS.
+ * :license: BSD, see LICENSE for details.
+ *
+ */
+
+/* -- main layout ----------------------------------------------------------- */
+
+div.clearer {
+ clear: both;
+}
+
+/* -- relbar ---------------------------------------------------------------- */
+
+div.related {
+ width: 100%;
+ font-size: 90%;
+}
+
+div.related h3 {
+ display: none;
+}
+
+div.related ul {
+ margin: 0;
+ padding: 0 0 0 10px;
+ list-style: none;
+}
+
+div.related li {
+ display: inline;
+}
+
+div.related li.right {
+ float: right;
+ margin-right: 5px;
+}
+
+/* -- sidebar --------------------------------------------------------------- */
+
+div.sphinxsidebarwrapper {
+ padding: 10px 5px 0 10px;
+}
+
+div.sphinxsidebar {
+ float: left;
+ width: 230px;
+ margin-left: -100%;
+ font-size: 90%;
+}
+
+div.sphinxsidebar ul {
+ list-style: none;
+}
+
+div.sphinxsidebar ul ul,
+div.sphinxsidebar ul.want-points {
+ margin-left: 20px;
+ list-style: square;
+}
+
+div.sphinxsidebar ul ul {
+ margin-top: 0;
+ margin-bottom: 0;
+}
+
+div.sphinxsidebar form {
+ margin-top: 10px;
+}
+
+div.sphinxsidebar input {
+ border: 1px solid #98dbcc;
+ font-family: sans-serif;
+ font-size: 1em;
+}
+
+div.sphinxsidebar #searchbox input[type="text"] {
+ width: 170px;
+}
+
+div.sphinxsidebar #searchbox input[type="submit"] {
+ width: 30px;
+}
+
+img {
+ border: 0;
+ max-width: 100%;
+}
+
+/* -- search page ----------------------------------------------------------- */
+
+ul.search {
+ margin: 10px 0 0 20px;
+ padding: 0;
+}
+
+ul.search li {
+ padding: 5px 0 5px 20px;
+ background-image: url(file.png);
+ background-repeat: no-repeat;
+ background-position: 0 7px;
+}
+
+ul.search li a {
+ font-weight: bold;
+}
+
+ul.search li div.context {
+ color: #888;
+ margin: 2px 0 0 30px;
+ text-align: left;
+}
+
+ul.keywordmatches li.goodmatch a {
+ font-weight: bold;
+}
+
+/* -- index page ------------------------------------------------------------ */
+
+table.contentstable {
+ width: 90%;
+}
+
+table.contentstable p.biglink {
+ line-height: 150%;
+}
+
+a.biglink {
+ font-size: 1.3em;
+}
+
+span.linkdescr {
+ font-style: italic;
+ padding-top: 5px;
+ font-size: 90%;
+}
+
+/* -- general index --------------------------------------------------------- */
+
+table.indextable {
+ width: 100%;
+}
+
+table.indextable td {
+ text-align: left;
+ vertical-align: top;
+}
+
+table.indextable dl, table.indextable dd {
+ margin-top: 0;
+ margin-bottom: 0;
+}
+
+table.indextable tr.pcap {
+ height: 10px;
+}
+
+table.indextable tr.cap {
+ margin-top: 10px;
+ background-color: #f2f2f2;
+}
+
+img.toggler {
+ margin-right: 3px;
+ margin-top: 3px;
+ cursor: pointer;
+}
+
+div.modindex-jumpbox {
+ border-top: 1px solid #ddd;
+ border-bottom: 1px solid #ddd;
+ margin: 1em 0 1em 0;
+ padding: 0.4em;
+}
+
+div.genindex-jumpbox {
+ border-top: 1px solid #ddd;
+ border-bottom: 1px solid #ddd;
+ margin: 1em 0 1em 0;
+ padding: 0.4em;
+}
+
+/* -- general body styles --------------------------------------------------- */
+
+a.headerlink {
+ visibility: hidden;
+}
+
+h1:hover > a.headerlink,
+h2:hover > a.headerlink,
+h3:hover > a.headerlink,
+h4:hover > a.headerlink,
+h5:hover > a.headerlink,
+h6:hover > a.headerlink,
+dt:hover > a.headerlink {
+ visibility: visible;
+}
+
+div.body p.caption {
+ text-align: inherit;
+}
+
+div.body td {
+ text-align: left;
+}
+
+.field-list ul {
+ padding-left: 1em;
+}
+
+.first {
+ margin-top: 0 !important;
+}
+
+p.rubric {
+ margin-top: 30px;
+ font-weight: bold;
+}
+
+img.align-left, .figure.align-left, object.align-left {
+ clear: left;
+ float: left;
+ margin-right: 1em;
+}
+
+img.align-right, .figure.align-right, object.align-right {
+ clear: right;
+ float: right;
+ margin-left: 1em;
+}
+
+img.align-center, .figure.align-center, object.align-center {
+ display: block;
+ margin-left: auto;
+ margin-right: auto;
+}
+
+.align-left {
+ text-align: left;
+}
+
+.align-center {
+ text-align: center;
+}
+
+.align-right {
+ text-align: right;
+}
+
+/* -- sidebars -------------------------------------------------------------- */
+
+div.sidebar {
+ margin: 0 0 0.5em 1em;
+ border: 1px solid #ddb;
+ padding: 7px 7px 0 7px;
+ background-color: #ffe;
+ width: 40%;
+ float: right;
+}
+
+p.sidebar-title {
+ font-weight: bold;
+}
+
+/* -- topics ---------------------------------------------------------------- */
+
+div.topic {
+ border: 1px solid #ccc;
+ padding: 7px 7px 0 7px;
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+}
+
+p.topic-title {
+ font-size: 1.1em;
+ font-weight: bold;
+ margin-top: 10px;
+}
+
+/* -- admonitions ----------------------------------------------------------- */
+
+div.admonition {
+ margin-top: 10px;
+ margin-bottom: 10px;
+ padding: 7px;
+}
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+div.admonition dt {
+ font-weight: bold;
+}
+
+div.admonition dl {
+ margin-bottom: 0;
+}
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+p.admonition-title {
+ margin: 0px 10px 5px 0px;
+ font-weight: bold;
+}
+
+div.body p.centered {
+ text-align: center;
+ margin-top: 25px;
+}
+
+/* -- tables ---------------------------------------------------------------- */
+
+table.docutils {
+ border: 0;
+ border-collapse: collapse;
+}
+
+table.docutils td, table.docutils th {
+ padding: 1px 8px 1px 5px;
+ border-top: 0;
+ border-left: 0;
+ border-right: 0;
+ border-bottom: 1px solid #aaa;
+}
+
+table.field-list td, table.field-list th {
+ border: 0 !important;
+}
+
+table.footnote td, table.footnote th {
+ border: 0 !important;
+}
+
+th {
+ text-align: left;
+ padding-right: 5px;
+}
+
+table.citation {
+ border-left: solid 1px gray;
+ margin-left: 1px;
+}
+
+table.citation td {
+ border-bottom: none;
+}
+
+/* -- other body styles ----------------------------------------------------- */
+
+ol.arabic {
+ list-style: decimal;
+}
+
+ol.loweralpha {
+ list-style: lower-alpha;
+}
+
+ol.upperalpha {
+ list-style: upper-alpha;
+}
+
+ol.lowerroman {
+ list-style: lower-roman;
+}
+
+ol.upperroman {
+ list-style: upper-roman;
+}
+
+dl {
+ margin-bottom: 15px;
+}
+
+dd p {
+ margin-top: 0px;
+}
+
+dd ul, dd table {
+ margin-bottom: 10px;
+}
+
+dd {
+ margin-top: 3px;
+ margin-bottom: 10px;
+ margin-left: 30px;
+}
+
+dt:target, .highlighted {
+ background-color: #fbe54e;
+}
+
+dl.glossary dt {
+ font-weight: bold;
+ font-size: 1.1em;
+}
+
+.field-list ul {
+ margin: 0;
+ padding-left: 1em;
+}
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+ margin: 0;
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+ font-size: 1.3em;
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+ font-style: italic;
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+ background-color: #fda;
+ padding: 5px;
+ border: 3px solid red;
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+ background-color: #ffa;
+}
+
+.line-block {
+ display: block;
+ margin-top: 1em;
+ margin-bottom: 1em;
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+ margin-top: 0;
+ margin-bottom: 0;
+ margin-left: 1.5em;
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+
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+ font-family: sans-serif;
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+ text-decoration: underline;
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+
+.classifier {
+ font-style: oblique;
+}
+
+abbr, acronym {
+ border-bottom: dotted 1px;
+ cursor: help;
+}
+
+/* -- code displays --------------------------------------------------------- */
+
+pre {
+ overflow: auto;
+ overflow-y: hidden; /* fixes display issues on Chrome browsers */
+}
+
+td.linenos pre {
+ padding: 5px 0px;
+ border: 0;
+ background-color: transparent;
+ color: #aaa;
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+ font-weight: bold;
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+tt.xref, a tt {
+ background-color: transparent;
+ font-weight: bold;
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+
+h1 tt, h2 tt, h3 tt, h4 tt, h5 tt, h6 tt {
+ background-color: transparent;
+}
+
+.viewcode-link {
+ float: right;
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+
+.viewcode-back {
+ float: right;
+ font-family: sans-serif;
+}
+
+div.viewcode-block:target {
+ margin: -1px -10px;
+ padding: 0 10px;
+}
+
+/* -- math display ---------------------------------------------------------- */
+
+img.math {
+ vertical-align: middle;
+}
+
+div.body div.math p {
+ text-align: center;
+}
+
+span.eqno {
+ float: right;
+}
+
+/* -- printout stylesheet --------------------------------------------------- */
+
+@media print {
+ div.document,
+ div.documentwrapper,
+ div.bodywrapper {
+ margin: 0 !important;
+ width: 100%;
+ }
+
+ div.sphinxsidebar,
+ div.related,
+ div.footer,
+ #top-link {
+ display: none;
+ }
+} \ No newline at end of file
diff --git a/python/docSRC/_build/html/_static/comment-bright.png b/python/docSRC/_build/html/_static/comment-bright.png
new file mode 100644
index 0000000..551517b
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Binary files differ
diff --git a/python/docSRC/_build/html/_static/comment-close.png b/python/docSRC/_build/html/_static/comment-close.png
new file mode 100644
index 0000000..09b54be
--- /dev/null
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diff --git a/python/docSRC/_build/html/_static/comment.png b/python/docSRC/_build/html/_static/comment.png
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diff --git a/python/docSRC/_build/html/_static/default.css b/python/docSRC/_build/html/_static/default.css
new file mode 100644
index 0000000..5f1399a
--- /dev/null
+++ b/python/docSRC/_build/html/_static/default.css
@@ -0,0 +1,256 @@
+/*
+ * default.css_t
+ * ~~~~~~~~~~~~~
+ *
+ * Sphinx stylesheet -- default theme.
+ *
+ * :copyright: Copyright 2007-2014 by the Sphinx team, see AUTHORS.
+ * :license: BSD, see LICENSE for details.
+ *
+ */
+
+@import url("basic.css");
+
+/* -- page layout ----------------------------------------------------------- */
+
+body {
+ font-family: sans-serif;
+ font-size: 100%;
+ background-color: #11303d;
+ color: #000;
+ margin: 0;
+ padding: 0;
+}
+
+div.document {
+ background-color: #1c4e63;
+}
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+ width: 100%;
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+ margin: 0 0 0 230px;
+}
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+ color: #000000;
+ padding: 0 20px 30px 20px;
+}
+
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+ color: #ffffff;
+ width: 100%;
+ padding: 9px 0 9px 0;
+ text-align: center;
+ font-size: 75%;
+}
+
+div.footer a {
+ color: #ffffff;
+ text-decoration: underline;
+}
+
+div.related {
+ background-color: #133f52;
+ line-height: 30px;
+ color: #ffffff;
+}
+
+div.related a {
+ color: #ffffff;
+}
+
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+}
+
+div.sphinxsidebar h3 {
+ font-family: 'Trebuchet MS', sans-serif;
+ color: #ffffff;
+ font-size: 1.4em;
+ font-weight: normal;
+ margin: 0;
+ padding: 0;
+}
+
+div.sphinxsidebar h3 a {
+ color: #ffffff;
+}
+
+div.sphinxsidebar h4 {
+ font-family: 'Trebuchet MS', sans-serif;
+ color: #ffffff;
+ font-size: 1.3em;
+ font-weight: normal;
+ margin: 5px 0 0 0;
+ padding: 0;
+}
+
+div.sphinxsidebar p {
+ color: #ffffff;
+}
+
+div.sphinxsidebar p.topless {
+ margin: 5px 10px 10px 10px;
+}
+
+div.sphinxsidebar ul {
+ margin: 10px;
+ padding: 0;
+ color: #ffffff;
+}
+
+div.sphinxsidebar a {
+ color: #98dbcc;
+}
+
+div.sphinxsidebar input {
+ border: 1px solid #98dbcc;
+ font-family: sans-serif;
+ font-size: 1em;
+}
+
+
+
+/* -- hyperlink styles ------------------------------------------------------ */
+
+a {
+ color: #355f7c;
+ text-decoration: none;
+}
+
+a:visited {
+ color: #355f7c;
+ text-decoration: none;
+}
+
+a:hover {
+ text-decoration: underline;
+}
+
+
+
+/* -- body styles ----------------------------------------------------------- */
+
+div.body h1,
+div.body h2,
+div.body h3,
+div.body h4,
+div.body h5,
+div.body h6 {
+ font-family: 'Trebuchet MS', sans-serif;
+ background-color: #f2f2f2;
+ font-weight: normal;
+ color: #20435c;
+ border-bottom: 1px solid #ccc;
+ margin: 20px -20px 10px -20px;
+ padding: 3px 0 3px 10px;
+}
+
+div.body h1 { margin-top: 0; font-size: 200%; }
+div.body h2 { font-size: 160%; }
+div.body h3 { font-size: 140%; }
+div.body h4 { font-size: 120%; }
+div.body h5 { font-size: 110%; }
+div.body h6 { font-size: 100%; }
+
+a.headerlink {
+ color: #c60f0f;
+ font-size: 0.8em;
+ padding: 0 4px 0 4px;
+ text-decoration: none;
+}
+
+a.headerlink:hover {
+ background-color: #c60f0f;
+ color: white;
+}
+
+div.body p, div.body dd, div.body li {
+ text-align: justify;
+ line-height: 130%;
+}
+
+div.admonition p.admonition-title + p {
+ display: inline;
+}
+
+div.admonition p {
+ margin-bottom: 5px;
+}
+
+div.admonition pre {
+ margin-bottom: 5px;
+}
+
+div.admonition ul, div.admonition ol {
+ margin-bottom: 5px;
+}
+
+div.note {
+ background-color: #eee;
+ border: 1px solid #ccc;
+}
+
+div.seealso {
+ background-color: #ffc;
+ border: 1px solid #ff6;
+}
+
+div.topic {
+ background-color: #eee;
+}
+
+div.warning {
+ background-color: #ffe4e4;
+ border: 1px solid #f66;
+}
+
+p.admonition-title {
+ display: inline;
+}
+
+p.admonition-title:after {
+ content: ":";
+}
+
+pre {
+ padding: 5px;
+ background-color: #eeffcc;
+ color: #333333;
+ line-height: 120%;
+ border: 1px solid #ac9;
+ border-left: none;
+ border-right: none;
+}
+
+tt {
+ background-color: #ecf0f3;
+ padding: 0 1px 0 1px;
+ font-size: 0.95em;
+}
+
+th {
+ background-color: #ede;
+}
+
+.warning tt {
+ background: #efc2c2;
+}
+
+.note tt {
+ background: #d6d6d6;
+}
+
+.viewcode-back {
+ font-family: sans-serif;
+}
+
+div.viewcode-block:target {
+ background-color: #f4debf;
+ border-top: 1px solid #ac9;
+ border-bottom: 1px solid #ac9;
+} \ No newline at end of file
diff --git a/python/docSRC/_build/html/_static/doctools.js b/python/docSRC/_build/html/_static/doctools.js
new file mode 100644
index 0000000..c5455c9
--- /dev/null
+++ b/python/docSRC/_build/html/_static/doctools.js
@@ -0,0 +1,238 @@
+/*
+ * doctools.js
+ * ~~~~~~~~~~~
+ *
+ * Sphinx JavaScript utilities for all documentation.
+ *
+ * :copyright: Copyright 2007-2014 by the Sphinx team, see AUTHORS.
+ * :license: BSD, see LICENSE for details.
+ *
+ */
+
+/**
+ * select a different prefix for underscore
+ */
+$u = _.noConflict();
+
+/**
+ * make the code below compatible with browsers without
+ * an installed firebug like debugger
+if (!window.console || !console.firebug) {
+ var names = ["log", "debug", "info", "warn", "error", "assert", "dir",
+ "dirxml", "group", "groupEnd", "time", "timeEnd", "count", "trace",
+ "profile", "profileEnd"];
+ window.console = {};
+ for (var i = 0; i < names.length; ++i)
+ window.console[names[i]] = function() {};
+}
+ */
+
+/**
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+ */
+jQuery.urldecode = function(x) {
+ return decodeURIComponent(x).replace(/\+/g, ' ');
+};
+
+/**
+ * small helper function to urlencode strings
+ */
+jQuery.urlencode = encodeURIComponent;
+
+/**
+ * This function returns the parsed url parameters of the
+ * current request. Multiple values per key are supported,
+ * it will always return arrays of strings for the value parts.
+ */
+jQuery.getQueryParameters = function(s) {
+ if (typeof s == 'undefined')
+ s = document.location.search;
+ var parts = s.substr(s.indexOf('?') + 1).split('&');
+ var result = {};
+ for (var i = 0; i < parts.length; i++) {
+ var tmp = parts[i].split('=', 2);
+ var key = jQuery.urldecode(tmp[0]);
+ var value = jQuery.urldecode(tmp[1]);
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+ result[key].push(value);
+ else
+ result[key] = [value];
+ }
+ return result;
+};
+
+/**
+ * highlight a given string on a jquery object by wrapping it in
+ * span elements with the given class name.
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+ function highlight(node) {
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+ var val = node.nodeValue;
+ var pos = val.toLowerCase().indexOf(text);
+ if (pos >= 0 && !jQuery(node.parentNode).hasClass(className)) {
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+ }
+ }
+ else if (!jQuery(node).is("button, select, textarea")) {
+ jQuery.each(node.childNodes, function() {
+ highlight(this);
+ });
+ }
+ }
+ return this.each(function() {
+ highlight(this);
+ });
+};
+
+/**
+ * Small JavaScript module for the documentation.
+ */
+var Documentation = {
+
+ init : function() {
+ this.fixFirefoxAnchorBug();
+ this.highlightSearchWords();
+ this.initIndexTable();
+ },
+
+ /**
+ * i18n support
+ */
+ TRANSLATIONS : {},
+ PLURAL_EXPR : function(n) { return n == 1 ? 0 : 1; },
+ LOCALE : 'unknown',
+
+ // gettext and ngettext don't access this so that the functions
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+ gettext : function(string) {
+ var translated = Documentation.TRANSLATIONS[string];
+ if (typeof translated == 'undefined')
+ return string;
+ return (typeof translated == 'string') ? translated : translated[0];
+ },
+
+ ngettext : function(singular, plural, n) {
+ var translated = Documentation.TRANSLATIONS[singular];
+ if (typeof translated == 'undefined')
+ return (n == 1) ? singular : plural;
+ return translated[Documentation.PLURALEXPR(n)];
+ },
+
+ addTranslations : function(catalog) {
+ for (var key in catalog.messages)
+ this.TRANSLATIONS[key] = catalog.messages[key];
+ this.PLURAL_EXPR = new Function('n', 'return +(' + catalog.plural_expr + ')');
+ this.LOCALE = catalog.locale;
+ },
+
+ /**
+ * add context elements like header anchor links
+ */
+ addContextElements : function() {
+ $('div[id] > :header:first').each(function() {
+ $('<a class="headerlink">\u00B6</a>').
+ attr('href', '#' + this.id).
+ attr('title', _('Permalink to this headline')).
+ appendTo(this);
+ });
+ $('dt[id]').each(function() {
+ $('<a class="headerlink">\u00B6</a>').
+ attr('href', '#' + this.id).
+ attr('title', _('Permalink to this definition')).
+ appendTo(this);
+ });
+ },
+
+ /**
+ * workaround a firefox stupidity
+ */
+ fixFirefoxAnchorBug : function() {
+ if (document.location.hash && $.browser.mozilla)
+ window.setTimeout(function() {
+ document.location.href += '';
+ }, 10);
+ },
+
+ /**
+ * highlight the search words provided in the url in the text
+ */
+ highlightSearchWords : function() {
+ var params = $.getQueryParameters();
+ var terms = (params.highlight) ? params.highlight[0].split(/\s+/) : [];
+ if (terms.length) {
+ var body = $('div.body');
+ if (!body.length) {
+ body = $('body');
+ }
+ window.setTimeout(function() {
+ $.each(terms, function() {
+ body.highlightText(this.toLowerCase(), 'highlighted');
+ });
+ }, 10);
+ $('<p class="highlight-link"><a href="javascript:Documentation.' +
+ 'hideSearchWords()">' + _('Hide Search Matches') + '</a></p>')
+ .appendTo($('#searchbox'));
+ }
+ },
+
+ /**
+ * init the domain index toggle buttons
+ */
+ initIndexTable : function() {
+ var togglers = $('img.toggler').click(function() {
+ var src = $(this).attr('src');
+ var idnum = $(this).attr('id').substr(7);
+ $('tr.cg-' + idnum).toggle();
+ if (src.substr(-9) == 'minus.png')
+ $(this).attr('src', src.substr(0, src.length-9) + 'plus.png');
+ else
+ $(this).attr('src', src.substr(0, src.length-8) + 'minus.png');
+ }).css('display', '');
+ if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) {
+ togglers.click();
+ }
+ },
+
+ /**
+ * helper function to hide the search marks again
+ */
+ hideSearchWords : function() {
+ $('#searchbox .highlight-link').fadeOut(300);
+ $('span.highlighted').removeClass('highlighted');
+ },
+
+ /**
+ * make the url absolute
+ */
+ makeURL : function(relativeURL) {
+ return DOCUMENTATION_OPTIONS.URL_ROOT + '/' + relativeURL;
+ },
+
+ /**
+ * get the current relative url
+ */
+ getCurrentURL : function() {
+ var path = document.location.pathname;
+ var parts = path.split(/\//);
+ $.each(DOCUMENTATION_OPTIONS.URL_ROOT.split(/\//), function() {
+ if (this == '..')
+ parts.pop();
+ });
+ var url = parts.join('/');
+ return path.substring(url.lastIndexOf('/') + 1, path.length - 1);
+ }
+};
+
+// quick alias for translations
+_ = Documentation.gettext;
+
+$(document).ready(function() {
+ Documentation.init();
+});
diff --git a/python/docSRC/_build/html/_static/down-pressed.png b/python/docSRC/_build/html/_static/down-pressed.png
new file mode 100644
index 0000000..6f7ad78
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Binary files differ
diff --git a/python/docSRC/_build/html/_static/down.png b/python/docSRC/_build/html/_static/down.png
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diff --git a/python/docSRC/_build/html/_static/file.png b/python/docSRC/_build/html/_static/file.png
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diff --git a/python/docSRC/_build/html/_static/jquery.js b/python/docSRC/_build/html/_static/jquery.js
new file mode 100644
index 0000000..83589da
--- /dev/null
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+.highlight { background: #eeffcc; }
+.highlight .c { color: #408090; font-style: italic } /* Comment */
+.highlight .err { border: 1px solid #FF0000 } /* Error */
+.highlight .k { color: #007020; font-weight: bold } /* Keyword */
+.highlight .o { color: #666666 } /* Operator */
+.highlight .cm { color: #408090; font-style: italic } /* Comment.Multiline */
+.highlight .cp { color: #007020 } /* Comment.Preproc */
+.highlight .c1 { color: #408090; font-style: italic } /* Comment.Single */
+.highlight .cs { color: #408090; background-color: #fff0f0 } /* Comment.Special */
+.highlight .gd { color: #A00000 } /* Generic.Deleted */
+.highlight .ge { font-style: italic } /* Generic.Emph */
+.highlight .gr { color: #FF0000 } /* Generic.Error */
+.highlight .gh { color: #000080; font-weight: bold } /* Generic.Heading */
+.highlight .gi { color: #00A000 } /* Generic.Inserted */
+.highlight .go { color: #333333 } /* Generic.Output */
+.highlight .gp { color: #c65d09; font-weight: bold } /* Generic.Prompt */
+.highlight .gs { font-weight: bold } /* Generic.Strong */
+.highlight .gu { color: #800080; font-weight: bold } /* Generic.Subheading */
+.highlight .gt { color: #0044DD } /* Generic.Traceback */
+.highlight .kc { color: #007020; font-weight: bold } /* Keyword.Constant */
+.highlight .kd { color: #007020; font-weight: bold } /* Keyword.Declaration */
+.highlight .kn { color: #007020; font-weight: bold } /* Keyword.Namespace */
+.highlight .kp { color: #007020 } /* Keyword.Pseudo */
+.highlight .kr { color: #007020; font-weight: bold } /* Keyword.Reserved */
+.highlight .kt { color: #902000 } /* Keyword.Type */
+.highlight .m { color: #208050 } /* Literal.Number */
+.highlight .s { color: #4070a0 } /* Literal.String */
+.highlight .na { color: #4070a0 } /* Name.Attribute */
+.highlight .nb { color: #007020 } /* Name.Builtin */
+.highlight .nc { color: #0e84b5; font-weight: bold } /* Name.Class */
+.highlight .no { color: #60add5 } /* Name.Constant */
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+.highlight .ni { color: #d55537; font-weight: bold } /* Name.Entity */
+.highlight .ne { color: #007020 } /* Name.Exception */
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+.highlight .nl { color: #002070; font-weight: bold } /* Name.Label */
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+.highlight .nt { color: #062873; font-weight: bold } /* Name.Tag */
+.highlight .nv { color: #bb60d5 } /* Name.Variable */
+.highlight .ow { color: #007020; font-weight: bold } /* Operator.Word */
+.highlight .w { color: #bbbbbb } /* Text.Whitespace */
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+.highlight .mh { color: #208050 } /* Literal.Number.Hex */
+.highlight .mi { color: #208050 } /* Literal.Number.Integer */
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index 0000000..6e1f06b
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+/*
+ * searchtools.js_t
+ * ~~~~~~~~~~~~~~~~
+ *
+ * Sphinx JavaScript utilties for the full-text search.
+ *
+ * :copyright: Copyright 2007-2014 by the Sphinx team, see AUTHORS.
+ * :license: BSD, see LICENSE for details.
+ *
+ */
+
+
+/**
+ * Porter Stemmer
+ */
+var Stemmer = function() {
+
+ var step2list = {
+ ational: 'ate',
+ tional: 'tion',
+ enci: 'ence',
+ anci: 'ance',
+ izer: 'ize',
+ bli: 'ble',
+ alli: 'al',
+ entli: 'ent',
+ eli: 'e',
+ ousli: 'ous',
+ ization: 'ize',
+ ation: 'ate',
+ ator: 'ate',
+ alism: 'al',
+ iveness: 'ive',
+ fulness: 'ful',
+ ousness: 'ous',
+ aliti: 'al',
+ iviti: 'ive',
+ biliti: 'ble',
+ logi: 'log'
+ };
+
+ var step3list = {
+ icate: 'ic',
+ ative: '',
+ alize: 'al',
+ iciti: 'ic',
+ ical: 'ic',
+ ful: '',
+ ness: ''
+ };
+
+ var c = "[^aeiou]"; // consonant
+ var v = "[aeiouy]"; // vowel
+ var C = c + "[^aeiouy]*"; // consonant sequence
+ var V = v + "[aeiou]*"; // vowel sequence
+
+ var mgr0 = "^(" + C + ")?" + V + C; // [C]VC... is m>0
+ var meq1 = "^(" + C + ")?" + V + C + "(" + V + ")?$"; // [C]VC[V] is m=1
+ var mgr1 = "^(" + C + ")?" + V + C + V + C; // [C]VCVC... is m>1
+ var s_v = "^(" + C + ")?" + v; // vowel in stem
+
+ this.stemWord = function (w) {
+ var stem;
+ var suffix;
+ var firstch;
+ var origword = w;
+
+ if (w.length < 3)
+ return w;
+
+ var re;
+ var re2;
+ var re3;
+ var re4;
+
+ firstch = w.substr(0,1);
+ if (firstch == "y")
+ w = firstch.toUpperCase() + w.substr(1);
+
+ // Step 1a
+ re = /^(.+?)(ss|i)es$/;
+ re2 = /^(.+?)([^s])s$/;
+
+ if (re.test(w))
+ w = w.replace(re,"$1$2");
+ else if (re2.test(w))
+ w = w.replace(re2,"$1$2");
+
+ // Step 1b
+ re = /^(.+?)eed$/;
+ re2 = /^(.+?)(ed|ing)$/;
+ if (re.test(w)) {
+ var fp = re.exec(w);
+ re = new RegExp(mgr0);
+ if (re.test(fp[1])) {
+ re = /.$/;
+ w = w.replace(re,"");
+ }
+ }
+ else if (re2.test(w)) {
+ var fp = re2.exec(w);
+ stem = fp[1];
+ re2 = new RegExp(s_v);
+ if (re2.test(stem)) {
+ w = stem;
+ re2 = /(at|bl|iz)$/;
+ re3 = new RegExp("([^aeiouylsz])\\1$");
+ re4 = new RegExp("^" + C + v + "[^aeiouwxy]$");
+ if (re2.test(w))
+ w = w + "e";
+ else if (re3.test(w)) {
+ re = /.$/;
+ w = w.replace(re,"");
+ }
+ else if (re4.test(w))
+ w = w + "e";
+ }
+ }
+
+ // Step 1c
+ re = /^(.+?)y$/;
+ if (re.test(w)) {
+ var fp = re.exec(w);
+ stem = fp[1];
+ re = new RegExp(s_v);
+ if (re.test(stem))
+ w = stem + "i";
+ }
+
+ // Step 2
+ re = /^(.+?)(ational|tional|enci|anci|izer|bli|alli|entli|eli|ousli|ization|ation|ator|alism|iveness|fulness|ousness|aliti|iviti|biliti|logi)$/;
+ if (re.test(w)) {
+ var fp = re.exec(w);
+ stem = fp[1];
+ suffix = fp[2];
+ re = new RegExp(mgr0);
+ if (re.test(stem))
+ w = stem + step2list[suffix];
+ }
+
+ // Step 3
+ re = /^(.+?)(icate|ative|alize|iciti|ical|ful|ness)$/;
+ if (re.test(w)) {
+ var fp = re.exec(w);
+ stem = fp[1];
+ suffix = fp[2];
+ re = new RegExp(mgr0);
+ if (re.test(stem))
+ w = stem + step3list[suffix];
+ }
+
+ // Step 4
+ re = /^(.+?)(al|ance|ence|er|ic|able|ible|ant|ement|ment|ent|ou|ism|ate|iti|ous|ive|ize)$/;
+ re2 = /^(.+?)(s|t)(ion)$/;
+ if (re.test(w)) {
+ var fp = re.exec(w);
+ stem = fp[1];
+ re = new RegExp(mgr1);
+ if (re.test(stem))
+ w = stem;
+ }
+ else if (re2.test(w)) {
+ var fp = re2.exec(w);
+ stem = fp[1] + fp[2];
+ re2 = new RegExp(mgr1);
+ if (re2.test(stem))
+ w = stem;
+ }
+
+ // Step 5
+ re = /^(.+?)e$/;
+ if (re.test(w)) {
+ var fp = re.exec(w);
+ stem = fp[1];
+ re = new RegExp(mgr1);
+ re2 = new RegExp(meq1);
+ re3 = new RegExp("^" + C + v + "[^aeiouwxy]$");
+ if (re.test(stem) || (re2.test(stem) && !(re3.test(stem))))
+ w = stem;
+ }
+ re = /ll$/;
+ re2 = new RegExp(mgr1);
+ if (re.test(w) && re2.test(w)) {
+ re = /.$/;
+ w = w.replace(re,"");
+ }
+
+ // and turn initial Y back to y
+ if (firstch == "y")
+ w = firstch.toLowerCase() + w.substr(1);
+ return w;
+ }
+}
+
+
+
+/**
+ * Simple result scoring code.
+ */
+var Scorer = {
+ // Implement the following function to further tweak the score for each result
+ // The function takes a result array [filename, title, anchor, descr, score]
+ // and returns the new score.
+ /*
+ score: function(result) {
+ return result[4];
+ },
+ */
+
+ // query matches the full name of an object
+ objNameMatch: 11,
+ // or matches in the last dotted part of the object name
+ objPartialMatch: 6,
+ // Additive scores depending on the priority of the object
+ objPrio: {0: 15, // used to be importantResults
+ 1: 5, // used to be objectResults
+ 2: -5}, // used to be unimportantResults
+ // Used when the priority is not in the mapping.
+ objPrioDefault: 0,
+
+ // query found in title
+ title: 15,
+ // query found in terms
+ term: 5
+};
+
+
+/**
+ * Search Module
+ */
+var Search = {
+
+ _index : null,
+ _queued_query : null,
+ _pulse_status : -1,
+
+ init : function() {
+ var params = $.getQueryParameters();
+ if (params.q) {
+ var query = params.q[0];
+ $('input[name="q"]')[0].value = query;
+ this.performSearch(query);
+ }
+ },
+
+ loadIndex : function(url) {
+ $.ajax({type: "GET", url: url, data: null,
+ dataType: "script", cache: true,
+ complete: function(jqxhr, textstatus) {
+ if (textstatus != "success") {
+ document.getElementById("searchindexloader").src = url;
+ }
+ }});
+ },
+
+ setIndex : function(index) {
+ var q;
+ this._index = index;
+ if ((q = this._queued_query) !== null) {
+ this._queued_query = null;
+ Search.query(q);
+ }
+ },
+
+ hasIndex : function() {
+ return this._index !== null;
+ },
+
+ deferQuery : function(query) {
+ this._queued_query = query;
+ },
+
+ stopPulse : function() {
+ this._pulse_status = 0;
+ },
+
+ startPulse : function() {
+ if (this._pulse_status >= 0)
+ return;
+ function pulse() {
+ var i;
+ Search._pulse_status = (Search._pulse_status + 1) % 4;
+ var dotString = '';
+ for (i = 0; i < Search._pulse_status; i++)
+ dotString += '.';
+ Search.dots.text(dotString);
+ if (Search._pulse_status > -1)
+ window.setTimeout(pulse, 500);
+ }
+ pulse();
+ },
+
+ /**
+ * perform a search for something (or wait until index is loaded)
+ */
+ performSearch : function(query) {
+ // create the required interface elements
+ this.out = $('#search-results');
+ this.title = $('<h2>' + _('Searching') + '</h2>').appendTo(this.out);
+ this.dots = $('<span></span>').appendTo(this.title);
+ this.status = $('<p style="display: none"></p>').appendTo(this.out);
+ this.output = $('<ul class="search"/>').appendTo(this.out);
+
+ $('#search-progress').text(_('Preparing search...'));
+ this.startPulse();
+
+ // index already loaded, the browser was quick!
+ if (this.hasIndex())
+ this.query(query);
+ else
+ this.deferQuery(query);
+ },
+
+ /**
+ * execute search (requires search index to be loaded)
+ */
+ query : function(query) {
+ var i;
+ var stopwords = ["a","and","are","as","at","be","but","by","for","if","in","into","is","it","near","no","not","of","on","or","such","that","the","their","then","there","these","they","this","to","was","will","with"];
+
+ // stem the searchterms and add them to the correct list
+ var stemmer = new Stemmer();
+ var searchterms = [];
+ var excluded = [];
+ var hlterms = [];
+ var tmp = query.split(/\s+/);
+ var objectterms = [];
+ for (i = 0; i < tmp.length; i++) {
+ if (tmp[i] !== "") {
+ objectterms.push(tmp[i].toLowerCase());
+ }
+
+ if ($u.indexOf(stopwords, tmp[i].toLowerCase()) != -1 || tmp[i].match(/^\d+$/) ||
+ tmp[i] === "") {
+ // skip this "word"
+ continue;
+ }
+ // stem the word
+ var word = stemmer.stemWord(tmp[i].toLowerCase());
+ var toAppend;
+ // select the correct list
+ if (word[0] == '-') {
+ toAppend = excluded;
+ word = word.substr(1);
+ }
+ else {
+ toAppend = searchterms;
+ hlterms.push(tmp[i].toLowerCase());
+ }
+ // only add if not already in the list
+ if (!$u.contains(toAppend, word))
+ toAppend.push(word);
+ }
+ var highlightstring = '?highlight=' + $.urlencode(hlterms.join(" "));
+
+ // console.debug('SEARCH: searching for:');
+ // console.info('required: ', searchterms);
+ // console.info('excluded: ', excluded);
+
+ // prepare search
+ var terms = this._index.terms;
+ var titleterms = this._index.titleterms;
+
+ // array of [filename, title, anchor, descr, score]
+ var results = [];
+ $('#search-progress').empty();
+
+ // lookup as object
+ for (i = 0; i < objectterms.length; i++) {
+ var others = [].concat(objectterms.slice(0, i),
+ objectterms.slice(i+1, objectterms.length));
+ results = results.concat(this.performObjectSearch(objectterms[i], others));
+ }
+
+ // lookup as search terms in fulltext
+ results = results.concat(this.performTermsSearch(searchterms, excluded, terms, Scorer.term))
+ .concat(this.performTermsSearch(searchterms, excluded, titleterms, Scorer.title));
+
+ // let the scorer override scores with a custom scoring function
+ if (Scorer.score) {
+ for (i = 0; i < results.length; i++)
+ results[i][4] = Scorer.score(results[i]);
+ }
+
+ // now sort the results by score (in opposite order of appearance, since the
+ // display function below uses pop() to retrieve items) and then
+ // alphabetically
+ results.sort(function(a, b) {
+ var left = a[4];
+ var right = b[4];
+ if (left > right) {
+ return 1;
+ } else if (left < right) {
+ return -1;
+ } else {
+ // same score: sort alphabetically
+ left = a[1].toLowerCase();
+ right = b[1].toLowerCase();
+ return (left > right) ? -1 : ((left < right) ? 1 : 0);
+ }
+ });
+
+ // for debugging
+ //Search.lastresults = results.slice(); // a copy
+ //console.info('search results:', Search.lastresults);
+
+ // print the results
+ var resultCount = results.length;
+ function displayNextItem() {
+ // results left, load the summary and display it
+ if (results.length) {
+ var item = results.pop();
+ var listItem = $('<li style="display:none"></li>');
+ if (DOCUMENTATION_OPTIONS.FILE_SUFFIX === '') {
+ // dirhtml builder
+ var dirname = item[0] + '/';
+ if (dirname.match(/\/index\/$/)) {
+ dirname = dirname.substring(0, dirname.length-6);
+ } else if (dirname == 'index/') {
+ dirname = '';
+ }
+ listItem.append($('<a/>').attr('href',
+ DOCUMENTATION_OPTIONS.URL_ROOT + dirname +
+ highlightstring + item[2]).html(item[1]));
+ } else {
+ // normal html builders
+ listItem.append($('<a/>').attr('href',
+ item[0] + DOCUMENTATION_OPTIONS.FILE_SUFFIX +
+ highlightstring + item[2]).html(item[1]));
+ }
+ if (item[3]) {
+ listItem.append($('<span> (' + item[3] + ')</span>'));
+ Search.output.append(listItem);
+ listItem.slideDown(5, function() {
+ displayNextItem();
+ });
+ } else if (DOCUMENTATION_OPTIONS.HAS_SOURCE) {
+ $.ajax({url: DOCUMENTATION_OPTIONS.URL_ROOT + '_sources/' + item[0] + '.txt',
+ dataType: "text",
+ complete: function(jqxhr, textstatus) {
+ var data = jqxhr.responseText;
+ if (data !== '') {
+ listItem.append(Search.makeSearchSummary(data, searchterms, hlterms));
+ }
+ Search.output.append(listItem);
+ listItem.slideDown(5, function() {
+ displayNextItem();
+ });
+ }});
+ } else {
+ // no source available, just display title
+ Search.output.append(listItem);
+ listItem.slideDown(5, function() {
+ displayNextItem();
+ });
+ }
+ }
+ // search finished, update title and status message
+ else {
+ Search.stopPulse();
+ Search.title.text(_('Search Results'));
+ if (!resultCount)
+ Search.status.text(_('Your search did not match any documents. Please make sure that all words are spelled correctly and that you\'ve selected enough categories.'));
+ else
+ Search.status.text(_('Search finished, found %s page(s) matching the search query.').replace('%s', resultCount));
+ Search.status.fadeIn(500);
+ }
+ }
+ displayNextItem();
+ },
+
+ /**
+ * search for object names
+ */
+ performObjectSearch : function(object, otherterms) {
+ var filenames = this._index.filenames;
+ var objects = this._index.objects;
+ var objnames = this._index.objnames;
+ var titles = this._index.titles;
+
+ var i;
+ var results = [];
+
+ for (var prefix in objects) {
+ for (var name in objects[prefix]) {
+ var fullname = (prefix ? prefix + '.' : '') + name;
+ if (fullname.toLowerCase().indexOf(object) > -1) {
+ var score = 0;
+ var parts = fullname.split('.');
+ // check for different match types: exact matches of full name or
+ // "last name" (i.e. last dotted part)
+ if (fullname == object || parts[parts.length - 1] == object) {
+ score += Scorer.objNameMatch;
+ // matches in last name
+ } else if (parts[parts.length - 1].indexOf(object) > -1) {
+ score += Scorer.objPartialMatch;
+ }
+ var match = objects[prefix][name];
+ var objname = objnames[match[1]][2];
+ var title = titles[match[0]];
+ // If more than one term searched for, we require other words to be
+ // found in the name/title/description
+ if (otherterms.length > 0) {
+ var haystack = (prefix + ' ' + name + ' ' +
+ objname + ' ' + title).toLowerCase();
+ var allfound = true;
+ for (i = 0; i < otherterms.length; i++) {
+ if (haystack.indexOf(otherterms[i]) == -1) {
+ allfound = false;
+ break;
+ }
+ }
+ if (!allfound) {
+ continue;
+ }
+ }
+ var descr = objname + _(', in ') + title;
+
+ var anchor = match[3];
+ if (anchor === '')
+ anchor = fullname;
+ else if (anchor == '-')
+ anchor = objnames[match[1]][1] + '-' + fullname;
+ // add custom score for some objects according to scorer
+ if (Scorer.objPrio.hasOwnProperty(match[2])) {
+ score += Scorer.objPrio[match[2]];
+ } else {
+ score += Scorer.objPrioDefault;
+ }
+ results.push([filenames[match[0]], fullname, '#'+anchor, descr, score]);
+ }
+ }
+ }
+
+ return results;
+ },
+
+ /**
+ * search for full-text terms in the index
+ */
+ performTermsSearch : function(searchterms, excluded, terms, score) {
+ var filenames = this._index.filenames;
+ var titles = this._index.titles;
+
+ var i, j, file, files;
+ var fileMap = {};
+ var results = [];
+
+ // perform the search on the required terms
+ for (i = 0; i < searchterms.length; i++) {
+ var word = searchterms[i];
+ // no match but word was a required one
+ if ((files = terms[word]) === undefined)
+ break;
+ if (files.length === undefined) {
+ files = [files];
+ }
+ // create the mapping
+ for (j = 0; j < files.length; j++) {
+ file = files[j];
+ if (file in fileMap)
+ fileMap[file].push(word);
+ else
+ fileMap[file] = [word];
+ }
+ }
+
+ // now check if the files don't contain excluded terms
+ for (file in fileMap) {
+ var valid = true;
+
+ // check if all requirements are matched
+ if (fileMap[file].length != searchterms.length)
+ continue;
+
+ // ensure that none of the excluded terms is in the search result
+ for (i = 0; i < excluded.length; i++) {
+ if (terms[excluded[i]] == file ||
+ $u.contains(terms[excluded[i]] || [], file)) {
+ valid = false;
+ break;
+ }
+ }
+
+ // if we have still a valid result we can add it to the result list
+ if (valid) {
+ results.push([filenames[file], titles[file], '', null, score]);
+ }
+ }
+ return results;
+ },
+
+ /**
+ * helper function to return a node containing the
+ * search summary for a given text. keywords is a list
+ * of stemmed words, hlwords is the list of normal, unstemmed
+ * words. the first one is used to find the occurance, the
+ * latter for highlighting it.
+ */
+ makeSearchSummary : function(text, keywords, hlwords) {
+ var textLower = text.toLowerCase();
+ var start = 0;
+ $.each(keywords, function() {
+ var i = textLower.indexOf(this.toLowerCase());
+ if (i > -1)
+ start = i;
+ });
+ start = Math.max(start - 120, 0);
+ var excerpt = ((start > 0) ? '...' : '') +
+ $.trim(text.substr(start, 240)) +
+ ((start + 240 - text.length) ? '...' : '');
+ var rv = $('<div class="context"></div>').text(excerpt);
+ $.each(hlwords, function() {
+ rv = rv.highlightText(this, 'highlighted');
+ });
+ return rv;
+ }
+};
+
+$(document).ready(function() {
+ Search.init();
+}); \ No newline at end of file
diff --git a/python/docSRC/_build/html/_static/sidebar.js b/python/docSRC/_build/html/_static/sidebar.js
new file mode 100644
index 0000000..4f09a0d
--- /dev/null
+++ b/python/docSRC/_build/html/_static/sidebar.js
@@ -0,0 +1,159 @@
+/*
+ * sidebar.js
+ * ~~~~~~~~~~
+ *
+ * This script makes the Sphinx sidebar collapsible.
+ *
+ * .sphinxsidebar contains .sphinxsidebarwrapper. This script adds
+ * in .sphixsidebar, after .sphinxsidebarwrapper, the #sidebarbutton
+ * used to collapse and expand the sidebar.
+ *
+ * When the sidebar is collapsed the .sphinxsidebarwrapper is hidden
+ * and the width of the sidebar and the margin-left of the document
+ * are decreased. When the sidebar is expanded the opposite happens.
+ * This script saves a per-browser/per-session cookie used to
+ * remember the position of the sidebar among the pages.
+ * Once the browser is closed the cookie is deleted and the position
+ * reset to the default (expanded).
+ *
+ * :copyright: Copyright 2007-2014 by the Sphinx team, see AUTHORS.
+ * :license: BSD, see LICENSE for details.
+ *
+ */
+
+$(function() {
+
+
+
+
+
+
+
+
+ // global elements used by the functions.
+ // the 'sidebarbutton' element is defined as global after its
+ // creation, in the add_sidebar_button function
+ var bodywrapper = $('.bodywrapper');
+ var sidebar = $('.sphinxsidebar');
+ var sidebarwrapper = $('.sphinxsidebarwrapper');
+
+ // for some reason, the document has no sidebar; do not run into errors
+ if (!sidebar.length) return;
+
+ // original margin-left of the bodywrapper and width of the sidebar
+ // with the sidebar expanded
+ var bw_margin_expanded = bodywrapper.css('margin-left');
+ var ssb_width_expanded = sidebar.width();
+
+ // margin-left of the bodywrapper and width of the sidebar
+ // with the sidebar collapsed
+ var bw_margin_collapsed = '.8em';
+ var ssb_width_collapsed = '.8em';
+
+ // colors used by the current theme
+ var dark_color = $('.related').css('background-color');
+ var light_color = $('.document').css('background-color');
+
+ function sidebar_is_collapsed() {
+ return sidebarwrapper.is(':not(:visible)');
+ }
+
+ function toggle_sidebar() {
+ if (sidebar_is_collapsed())
+ expand_sidebar();
+ else
+ collapse_sidebar();
+ }
+
+ function collapse_sidebar() {
+ sidebarwrapper.hide();
+ sidebar.css('width', ssb_width_collapsed);
+ bodywrapper.css('margin-left', bw_margin_collapsed);
+ sidebarbutton.css({
+ 'margin-left': '0',
+ 'height': bodywrapper.height()
+ });
+ sidebarbutton.find('span').text('»');
+ sidebarbutton.attr('title', _('Expand sidebar'));
+ document.cookie = 'sidebar=collapsed';
+ }
+
+ function expand_sidebar() {
+ bodywrapper.css('margin-left', bw_margin_expanded);
+ sidebar.css('width', ssb_width_expanded);
+ sidebarwrapper.show();
+ sidebarbutton.css({
+ 'margin-left': ssb_width_expanded-12,
+ 'height': bodywrapper.height()
+ });
+ sidebarbutton.find('span').text('«');
+ sidebarbutton.attr('title', _('Collapse sidebar'));
+ document.cookie = 'sidebar=expanded';
+ }
+
+ function add_sidebar_button() {
+ sidebarwrapper.css({
+ 'float': 'left',
+ 'margin-right': '0',
+ 'width': ssb_width_expanded - 28
+ });
+ // create the button
+ sidebar.append(
+ '<div id="sidebarbutton"><span>&laquo;</span></div>'
+ );
+ var sidebarbutton = $('#sidebarbutton');
+ light_color = sidebarbutton.css('background-color');
+ // find the height of the viewport to center the '<<' in the page
+ var viewport_height;
+ if (window.innerHeight)
+ viewport_height = window.innerHeight;
+ else
+ viewport_height = $(window).height();
+ sidebarbutton.find('span').css({
+ 'display': 'block',
+ 'margin-top': (viewport_height - sidebar.position().top - 20) / 2
+ });
+
+ sidebarbutton.click(toggle_sidebar);
+ sidebarbutton.attr('title', _('Collapse sidebar'));
+ sidebarbutton.css({
+ 'color': '#FFFFFF',
+ 'border-left': '1px solid ' + dark_color,
+ 'font-size': '1.2em',
+ 'cursor': 'pointer',
+ 'height': bodywrapper.height(),
+ 'padding-top': '1px',
+ 'margin-left': ssb_width_expanded - 12
+ });
+
+ sidebarbutton.hover(
+ function () {
+ $(this).css('background-color', dark_color);
+ },
+ function () {
+ $(this).css('background-color', light_color);
+ }
+ );
+ }
+
+ function set_position_from_cookie() {
+ if (!document.cookie)
+ return;
+ var items = document.cookie.split(';');
+ for(var k=0; k<items.length; k++) {
+ var key_val = items[k].split('=');
+ var key = key_val[0].replace(/ /, ""); // strip leading spaces
+ if (key == 'sidebar') {
+ var value = key_val[1];
+ if ((value == 'collapsed') && (!sidebar_is_collapsed()))
+ collapse_sidebar();
+ else if ((value == 'expanded') && (sidebar_is_collapsed()))
+ expand_sidebar();
+ }
+ }
+ }
+
+ add_sidebar_button();
+ var sidebarbutton = $('#sidebarbutton');
+ set_position_from_cookie();
+}); \ No newline at end of file
diff --git a/python/docSRC/_build/html/_static/underscore.js b/python/docSRC/_build/html/_static/underscore.js
new file mode 100644
index 0000000..5b55f32
--- /dev/null
+++ b/python/docSRC/_build/html/_static/underscore.js
@@ -0,0 +1,31 @@
+// Underscore.js 1.3.1
+// (c) 2009-2012 Jeremy Ashkenas, DocumentCloud Inc.
+// Underscore is freely distributable under the MIT license.
+// Portions of Underscore are inspired or borrowed from Prototype,
+// Oliver Steele's Functional, and John Resig's Micro-Templating.
+// For all details and documentation:
+// http://documentcloud.github.com/underscore
+(function(){function q(a,c,d){if(a===c)return a!==0||1/a==1/c;if(a==null||c==null)return a===c;if(a._chain)a=a._wrapped;if(c._chain)c=c._wrapped;if(a.isEqual&&b.isFunction(a.isEqual))return a.isEqual(c);if(c.isEqual&&b.isFunction(c.isEqual))return c.isEqual(a);var e=l.call(a);if(e!=l.call(c))return false;switch(e){case "[object String]":return a==String(c);case "[object Number]":return a!=+a?c!=+c:a==0?1/a==1/c:a==+c;case "[object Date]":case "[object Boolean]":return+a==+c;case "[object RegExp]":return a.source==
+c.source&&a.global==c.global&&a.multiline==c.multiline&&a.ignoreCase==c.ignoreCase}if(typeof a!="object"||typeof c!="object")return false;for(var f=d.length;f--;)if(d[f]==a)return true;d.push(a);var f=0,g=true;if(e=="[object Array]"){if(f=a.length,g=f==c.length)for(;f--;)if(!(g=f in a==f in c&&q(a[f],c[f],d)))break}else{if("constructor"in a!="constructor"in c||a.constructor!=c.constructor)return false;for(var h in a)if(b.has(a,h)&&(f++,!(g=b.has(c,h)&&q(a[h],c[h],d))))break;if(g){for(h in c)if(b.has(c,
+h)&&!f--)break;g=!f}}d.pop();return g}var r=this,G=r._,n={},k=Array.prototype,o=Object.prototype,i=k.slice,H=k.unshift,l=o.toString,I=o.hasOwnProperty,w=k.forEach,x=k.map,y=k.reduce,z=k.reduceRight,A=k.filter,B=k.every,C=k.some,p=k.indexOf,D=k.lastIndexOf,o=Array.isArray,J=Object.keys,s=Function.prototype.bind,b=function(a){return new m(a)};if(typeof exports!=="undefined"){if(typeof module!=="undefined"&&module.exports)exports=module.exports=b;exports._=b}else r._=b;b.VERSION="1.3.1";var j=b.each=
+b.forEach=function(a,c,d){if(a!=null)if(w&&a.forEach===w)a.forEach(c,d);else if(a.length===+a.length)for(var e=0,f=a.length;e<f;e++){if(e in a&&c.call(d,a[e],e,a)===n)break}else for(e in a)if(b.has(a,e)&&c.call(d,a[e],e,a)===n)break};b.map=b.collect=function(a,c,b){var e=[];if(a==null)return e;if(x&&a.map===x)return a.map(c,b);j(a,function(a,g,h){e[e.length]=c.call(b,a,g,h)});if(a.length===+a.length)e.length=a.length;return e};b.reduce=b.foldl=b.inject=function(a,c,d,e){var f=arguments.length>2;a==
+null&&(a=[]);if(y&&a.reduce===y)return e&&(c=b.bind(c,e)),f?a.reduce(c,d):a.reduce(c);j(a,function(a,b,i){f?d=c.call(e,d,a,b,i):(d=a,f=true)});if(!f)throw new TypeError("Reduce of empty array with no initial value");return d};b.reduceRight=b.foldr=function(a,c,d,e){var f=arguments.length>2;a==null&&(a=[]);if(z&&a.reduceRight===z)return e&&(c=b.bind(c,e)),f?a.reduceRight(c,d):a.reduceRight(c);var g=b.toArray(a).reverse();e&&!f&&(c=b.bind(c,e));return f?b.reduce(g,c,d,e):b.reduce(g,c)};b.find=b.detect=
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+var F=function(){};b.bind=function(a,c){var d,e;if(a.bind===s&&s)return s.apply(a,i.call(arguments,1));if(!b.isFunction(a))throw new TypeError;e=i.call(arguments,2);return d=function(){if(!(this instanceof d))return a.apply(c,e.concat(i.call(arguments)));F.prototype=a.prototype;var b=new F,g=a.apply(b,e.concat(i.call(arguments)));return Object(g)===g?g:b}};b.bindAll=function(a){var c=i.call(arguments,1);c.length==0&&(c=b.functions(a));j(c,function(c){a[c]=b.bind(a[c],a)});return a};b.memoize=function(a,
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+b.isRegExp=function(a){return l.call(a)=="[object RegExp]"};b.isNull=function(a){return a===null};b.isUndefined=function(a){return a===void 0};b.has=function(a,b){return I.call(a,b)};b.noConflict=function(){r._=G;return this};b.identity=function(a){return a};b.times=function(a,b,d){for(var e=0;e<a;e++)b.call(d,e)};b.escape=function(a){return(""+a).replace(/&/g,"&amp;").replace(/</g,"&lt;").replace(/>/g,"&gt;").replace(/"/g,"&quot;").replace(/'/g,"&#x27;").replace(/\//g,"&#x2F;")};b.mixin=function(a){j(b.functions(a),
+function(c){K(c,b[c]=a[c])})};var L=0;b.uniqueId=function(a){var b=L++;return a?a+b:b};b.templateSettings={evaluate:/<%([\s\S]+?)%>/g,interpolate:/<%=([\s\S]+?)%>/g,escape:/<%-([\s\S]+?)%>/g};var t=/.^/,u=function(a){return a.replace(/\\\\/g,"\\").replace(/\\'/g,"'")};b.template=function(a,c){var d=b.templateSettings,d="var __p=[],print=function(){__p.push.apply(__p,arguments);};with(obj||{}){__p.push('"+a.replace(/\\/g,"\\\\").replace(/'/g,"\\'").replace(d.escape||t,function(a,b){return"',_.escape("+
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diff --git a/python/docSRC/_build/html/_static/up-pressed.png b/python/docSRC/_build/html/_static/up-pressed.png
new file mode 100644
index 0000000..8bd587a
--- /dev/null
+++ b/python/docSRC/_build/html/_static/up-pressed.png
Binary files differ
diff --git a/python/docSRC/_build/html/_static/up.png b/python/docSRC/_build/html/_static/up.png
new file mode 100644
index 0000000..b946256
--- /dev/null
+++ b/python/docSRC/_build/html/_static/up.png
Binary files differ
diff --git a/python/docSRC/_build/html/_static/websupport.js b/python/docSRC/_build/html/_static/websupport.js
new file mode 100644
index 0000000..71c0a13
--- /dev/null
+++ b/python/docSRC/_build/html/_static/websupport.js
@@ -0,0 +1,808 @@
+/*
+ * websupport.js
+ * ~~~~~~~~~~~~~
+ *
+ * sphinx.websupport utilties for all documentation.
+ *
+ * :copyright: Copyright 2007-2014 by the Sphinx team, see AUTHORS.
+ * :license: BSD, see LICENSE for details.
+ *
+ */
+
+(function($) {
+ $.fn.autogrow = function() {
+ return this.each(function() {
+ var textarea = this;
+
+ $.fn.autogrow.resize(textarea);
+
+ $(textarea)
+ .focus(function() {
+ textarea.interval = setInterval(function() {
+ $.fn.autogrow.resize(textarea);
+ }, 500);
+ })
+ .blur(function() {
+ clearInterval(textarea.interval);
+ });
+ });
+ };
+
+ $.fn.autogrow.resize = function(textarea) {
+ var lineHeight = parseInt($(textarea).css('line-height'), 10);
+ var lines = textarea.value.split('\n');
+ var columns = textarea.cols;
+ var lineCount = 0;
+ $.each(lines, function() {
+ lineCount += Math.ceil(this.length / columns) || 1;
+ });
+ var height = lineHeight * (lineCount + 1);
+ $(textarea).css('height', height);
+ };
+})(jQuery);
+
+(function($) {
+ var comp, by;
+
+ function init() {
+ initEvents();
+ initComparator();
+ }
+
+ function initEvents() {
+ $('a.comment-close').live("click", function(event) {
+ event.preventDefault();
+ hide($(this).attr('id').substring(2));
+ });
+ $('a.vote').live("click", function(event) {
+ event.preventDefault();
+ handleVote($(this));
+ });
+ $('a.reply').live("click", function(event) {
+ event.preventDefault();
+ openReply($(this).attr('id').substring(2));
+ });
+ $('a.close-reply').live("click", function(event) {
+ event.preventDefault();
+ closeReply($(this).attr('id').substring(2));
+ });
+ $('a.sort-option').live("click", function(event) {
+ event.preventDefault();
+ handleReSort($(this));
+ });
+ $('a.show-proposal').live("click", function(event) {
+ event.preventDefault();
+ showProposal($(this).attr('id').substring(2));
+ });
+ $('a.hide-proposal').live("click", function(event) {
+ event.preventDefault();
+ hideProposal($(this).attr('id').substring(2));
+ });
+ $('a.show-propose-change').live("click", function(event) {
+ event.preventDefault();
+ showProposeChange($(this).attr('id').substring(2));
+ });
+ $('a.hide-propose-change').live("click", function(event) {
+ event.preventDefault();
+ hideProposeChange($(this).attr('id').substring(2));
+ });
+ $('a.accept-comment').live("click", function(event) {
+ event.preventDefault();
+ acceptComment($(this).attr('id').substring(2));
+ });
+ $('a.delete-comment').live("click", function(event) {
+ event.preventDefault();
+ deleteComment($(this).attr('id').substring(2));
+ });
+ $('a.comment-markup').live("click", function(event) {
+ event.preventDefault();
+ toggleCommentMarkupBox($(this).attr('id').substring(2));
+ });
+ }
+
+ /**
+ * Set comp, which is a comparator function used for sorting and
+ * inserting comments into the list.
+ */
+ function setComparator() {
+ // If the first three letters are "asc", sort in ascending order
+ // and remove the prefix.
+ if (by.substring(0,3) == 'asc') {
+ var i = by.substring(3);
+ comp = function(a, b) { return a[i] - b[i]; };
+ } else {
+ // Otherwise sort in descending order.
+ comp = function(a, b) { return b[by] - a[by]; };
+ }
+
+ // Reset link styles and format the selected sort option.
+ $('a.sel').attr('href', '#').removeClass('sel');
+ $('a.by' + by).removeAttr('href').addClass('sel');
+ }
+
+ /**
+ * Create a comp function. If the user has preferences stored in
+ * the sortBy cookie, use those, otherwise use the default.
+ */
+ function initComparator() {
+ by = 'rating'; // Default to sort by rating.
+ // If the sortBy cookie is set, use that instead.
+ if (document.cookie.length > 0) {
+ var start = document.cookie.indexOf('sortBy=');
+ if (start != -1) {
+ start = start + 7;
+ var end = document.cookie.indexOf(";", start);
+ if (end == -1) {
+ end = document.cookie.length;
+ by = unescape(document.cookie.substring(start, end));
+ }
+ }
+ }
+ setComparator();
+ }
+
+ /**
+ * Show a comment div.
+ */
+ function show(id) {
+ $('#ao' + id).hide();
+ $('#ah' + id).show();
+ var context = $.extend({id: id}, opts);
+ var popup = $(renderTemplate(popupTemplate, context)).hide();
+ popup.find('textarea[name="proposal"]').hide();
+ popup.find('a.by' + by).addClass('sel');
+ var form = popup.find('#cf' + id);
+ form.submit(function(event) {
+ event.preventDefault();
+ addComment(form);
+ });
+ $('#s' + id).after(popup);
+ popup.slideDown('fast', function() {
+ getComments(id);
+ });
+ }
+
+ /**
+ * Hide a comment div.
+ */
+ function hide(id) {
+ $('#ah' + id).hide();
+ $('#ao' + id).show();
+ var div = $('#sc' + id);
+ div.slideUp('fast', function() {
+ div.remove();
+ });
+ }
+
+ /**
+ * Perform an ajax request to get comments for a node
+ * and insert the comments into the comments tree.
+ */
+ function getComments(id) {
+ $.ajax({
+ type: 'GET',
+ url: opts.getCommentsURL,
+ data: {node: id},
+ success: function(data, textStatus, request) {
+ var ul = $('#cl' + id);
+ var speed = 100;
+ $('#cf' + id)
+ .find('textarea[name="proposal"]')
+ .data('source', data.source);
+
+ if (data.comments.length === 0) {
+ ul.html('<li>No comments yet.</li>');
+ ul.data('empty', true);
+ } else {
+ // If there are comments, sort them and put them in the list.
+ var comments = sortComments(data.comments);
+ speed = data.comments.length * 100;
+ appendComments(comments, ul);
+ ul.data('empty', false);
+ }
+ $('#cn' + id).slideUp(speed + 200);
+ ul.slideDown(speed);
+ },
+ error: function(request, textStatus, error) {
+ showError('Oops, there was a problem retrieving the comments.');
+ },
+ dataType: 'json'
+ });
+ }
+
+ /**
+ * Add a comment via ajax and insert the comment into the comment tree.
+ */
+ function addComment(form) {
+ var node_id = form.find('input[name="node"]').val();
+ var parent_id = form.find('input[name="parent"]').val();
+ var text = form.find('textarea[name="comment"]').val();
+ var proposal = form.find('textarea[name="proposal"]').val();
+
+ if (text == '') {
+ showError('Please enter a comment.');
+ return;
+ }
+
+ // Disable the form that is being submitted.
+ form.find('textarea,input').attr('disabled', 'disabled');
+
+ // Send the comment to the server.
+ $.ajax({
+ type: "POST",
+ url: opts.addCommentURL,
+ dataType: 'json',
+ data: {
+ node: node_id,
+ parent: parent_id,
+ text: text,
+ proposal: proposal
+ },
+ success: function(data, textStatus, error) {
+ // Reset the form.
+ if (node_id) {
+ hideProposeChange(node_id);
+ }
+ form.find('textarea')
+ .val('')
+ .add(form.find('input'))
+ .removeAttr('disabled');
+ var ul = $('#cl' + (node_id || parent_id));
+ if (ul.data('empty')) {
+ $(ul).empty();
+ ul.data('empty', false);
+ }
+ insertComment(data.comment);
+ var ao = $('#ao' + node_id);
+ ao.find('img').attr({'src': opts.commentBrightImage});
+ if (node_id) {
+ // if this was a "root" comment, remove the commenting box
+ // (the user can get it back by reopening the comment popup)
+ $('#ca' + node_id).slideUp();
+ }
+ },
+ error: function(request, textStatus, error) {
+ form.find('textarea,input').removeAttr('disabled');
+ showError('Oops, there was a problem adding the comment.');
+ }
+ });
+ }
+
+ /**
+ * Recursively append comments to the main comment list and children
+ * lists, creating the comment tree.
+ */
+ function appendComments(comments, ul) {
+ $.each(comments, function() {
+ var div = createCommentDiv(this);
+ ul.append($(document.createElement('li')).html(div));
+ appendComments(this.children, div.find('ul.comment-children'));
+ // To avoid stagnating data, don't store the comments children in data.
+ this.children = null;
+ div.data('comment', this);
+ });
+ }
+
+ /**
+ * After adding a new comment, it must be inserted in the correct
+ * location in the comment tree.
+ */
+ function insertComment(comment) {
+ var div = createCommentDiv(comment);
+
+ // To avoid stagnating data, don't store the comments children in data.
+ comment.children = null;
+ div.data('comment', comment);
+
+ var ul = $('#cl' + (comment.node || comment.parent));
+ var siblings = getChildren(ul);
+
+ var li = $(document.createElement('li'));
+ li.hide();
+
+ // Determine where in the parents children list to insert this comment.
+ for(i=0; i < siblings.length; i++) {
+ if (comp(comment, siblings[i]) <= 0) {
+ $('#cd' + siblings[i].id)
+ .parent()
+ .before(li.html(div));
+ li.slideDown('fast');
+ return;
+ }
+ }
+
+ // If we get here, this comment rates lower than all the others,
+ // or it is the only comment in the list.
+ ul.append(li.html(div));
+ li.slideDown('fast');
+ }
+
+ function acceptComment(id) {
+ $.ajax({
+ type: 'POST',
+ url: opts.acceptCommentURL,
+ data: {id: id},
+ success: function(data, textStatus, request) {
+ $('#cm' + id).fadeOut('fast');
+ $('#cd' + id).removeClass('moderate');
+ },
+ error: function(request, textStatus, error) {
+ showError('Oops, there was a problem accepting the comment.');
+ }
+ });
+ }
+
+ function deleteComment(id) {
+ $.ajax({
+ type: 'POST',
+ url: opts.deleteCommentURL,
+ data: {id: id},
+ success: function(data, textStatus, request) {
+ var div = $('#cd' + id);
+ if (data == 'delete') {
+ // Moderator mode: remove the comment and all children immediately
+ div.slideUp('fast', function() {
+ div.remove();
+ });
+ return;
+ }
+ // User mode: only mark the comment as deleted
+ div
+ .find('span.user-id:first')
+ .text('[deleted]').end()
+ .find('div.comment-text:first')
+ .text('[deleted]').end()
+ .find('#cm' + id + ', #dc' + id + ', #ac' + id + ', #rc' + id +
+ ', #sp' + id + ', #hp' + id + ', #cr' + id + ', #rl' + id)
+ .remove();
+ var comment = div.data('comment');
+ comment.username = '[deleted]';
+ comment.text = '[deleted]';
+ div.data('comment', comment);
+ },
+ error: function(request, textStatus, error) {
+ showError('Oops, there was a problem deleting the comment.');
+ }
+ });
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diff --git a/python/docSRC/_build/html/algorithm.html b/python/docSRC/_build/html/algorithm.html
new file mode 100644
index 0000000..bf4b90f
--- /dev/null
+++ b/python/docSRC/_build/html/algorithm.html
@@ -0,0 +1,205 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+
+
+<html xmlns="http://www.w3.org/1999/xhtml">
+ <head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+
+ <title>Algorithms: the algorithm module &mdash; PyASTRAToolbox 1.6 documentation</title>
+
+ <link rel="stylesheet" href="_static/default.css" type="text/css" />
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+ <h3>Navigation</h3>
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+ accesskey="I">index</a></li>
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+ >modules</a> |</li>
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+ <div class="documentwrapper">
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+ <div class="body">
+
+ <div class="section" id="module-astra.algorithm">
+<span id="algorithms-the-algorithm-module"></span><h1>Algorithms: the <tt class="xref py py-mod docutils literal"><span class="pre">algorithm</span></tt> module<a class="headerlink" href="#module-astra.algorithm" title="Permalink to this headline">¶</a></h1>
+<dl class="function">
+<dt id="astra.algorithm.clear">
+<tt class="descclassname">astra.algorithm.</tt><tt class="descname">clear</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/algorithm.html#clear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.algorithm.clear" title="Permalink to this definition">¶</a></dt>
+<dd><p>Clear all matrix objects.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.algorithm.create">
+<tt class="descclassname">astra.algorithm.</tt><tt class="descname">create</tt><big>(</big><em>config</em><big>)</big><a class="reference internal" href="_modules/astra/algorithm.html#create"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.algorithm.create" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create algorithm object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>config</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Algorithm options.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> &#8211; the ID of the constructed object.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.algorithm.delete">
+<tt class="descclassname">astra.algorithm.</tt><tt class="descname">delete</tt><big>(</big><em>ids</em><big>)</big><a class="reference internal" href="_modules/astra/algorithm.html#delete"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.algorithm.delete" title="Permalink to this definition">¶</a></dt>
+<dd><p>Delete a matrix object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>ids</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#list" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">list</span></tt></a>) &#8211; ID or list of ID&#8217;s to delete.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.algorithm.get_res_norm">
+<tt class="descclassname">astra.algorithm.</tt><tt class="descname">get_res_norm</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/algorithm.html#get_res_norm"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.algorithm.get_res_norm" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get residual norm of algorithm.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a> &#8211; The residual norm.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.algorithm.info">
+<tt class="descclassname">astra.algorithm.</tt><tt class="descname">info</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/algorithm.html#info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.algorithm.info" title="Permalink to this definition">¶</a></dt>
+<dd><p>Print info on matrix objects in memory.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.algorithm.run">
+<tt class="descclassname">astra.algorithm.</tt><tt class="descname">run</tt><big>(</big><em>i</em>, <em>iterations=1</em><big>)</big><a class="reference internal" href="_modules/astra/algorithm.html#run"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.algorithm.run" title="Permalink to this definition">¶</a></dt>
+<dd><p>Run an algorithm.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object.</li>
+<li><strong>iterations</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of iterations to run.</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
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diff --git a/python/docSRC/_build/html/astra.html b/python/docSRC/_build/html/astra.html
new file mode 100644
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ <title>Additional ASTRA methods: the astra module &mdash; PyASTRAToolbox 1.6 documentation</title>
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+
+ <div class="section" id="module-astra.astra">
+<span id="additional-astra-methods-the-astra-module"></span><h1>Additional ASTRA methods: the <tt class="xref py py-mod docutils literal"><span class="pre">astra</span></tt> module<a class="headerlink" href="#module-astra.astra" title="Permalink to this headline">¶</a></h1>
+<dl class="function">
+<dt id="astra.astra.credits">
+<tt class="descclassname">astra.astra.</tt><tt class="descname">credits</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/astra.html#credits"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.astra.credits" title="Permalink to this definition">¶</a></dt>
+<dd><p>Print credits of the ASTRA Toolbox.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.astra.set_gpu_index">
+<tt class="descclassname">astra.astra.</tt><tt class="descname">set_gpu_index</tt><big>(</big><em>idx</em><big>)</big><a class="reference internal" href="_modules/astra/astra.html#set_gpu_index"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.astra.set_gpu_index" title="Permalink to this definition">¶</a></dt>
+<dd><p>Set default GPU index to use.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>idx</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; GPU index</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.astra.use_cuda">
+<tt class="descclassname">astra.astra.</tt><tt class="descname">use_cuda</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/astra.html#use_cuda"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.astra.use_cuda" title="Permalink to this definition">¶</a></dt>
+<dd><p>Test if CUDA is enabled.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a> &#8211; <tt class="docutils literal"><span class="pre">True</span></tt> if CUDA is enabled.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.astra.version">
+<tt class="descclassname">astra.astra.</tt><tt class="descname">version</tt><big>(</big><em>printToScreen=False</em><big>)</big><a class="reference internal" href="_modules/astra/astra.html#version"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.astra.version" title="Permalink to this definition">¶</a></dt>
+<dd><p>Check version of the ASTRA Toolbox.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>printToScreen</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) &#8211; If <tt class="docutils literal"><span class="pre">True</span></tt>, print version string. If <tt class="docutils literal"><span class="pre">False</span></tt>, return version integer.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><tt class="xref py py-class docutils literal"><span class="pre">string</span></tt> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> &#8211; The version string or integer.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+</div>
+
+
+ </div>
+ </div>
+ </div>
+ <div class="sphinxsidebar">
+ <div class="sphinxsidebarwrapper">
+ <h4>Previous topic</h4>
+ <p class="topless"><a href="matlab.html"
+ title="previous chapter">MATLAB compatibility interface: the <tt class="docutils literal"><span class="pre">matlab</span></tt> module</a></p>
+ <h3>This Page</h3>
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+</html> \ No newline at end of file
diff --git a/python/docSRC/_build/html/creators.html b/python/docSRC/_build/html/creators.html
new file mode 100644
index 0000000..2f29232
--- /dev/null
+++ b/python/docSRC/_build/html/creators.html
@@ -0,0 +1,520 @@
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+
+ <title>Creation of objects: the creators module &mdash; PyASTRAToolbox 1.6 documentation</title>
+
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+ <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
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+
+ <div class="section" id="module-astra.creators">
+<span id="creation-of-objects-the-creators-module"></span><h1>Creation of objects: the <tt class="xref py py-mod docutils literal"><span class="pre">creators</span></tt> module<a class="headerlink" href="#module-astra.creators" title="Permalink to this headline">¶</a></h1>
+<dl class="function">
+<dt id="astra.creators.astra_dict">
+<tt class="descclassname">astra.creators.</tt><tt class="descname">astra_dict</tt><big>(</big><em>intype</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#astra_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.astra_dict" title="Permalink to this definition">¶</a></dt>
+<dd><p>Creates a dict to use with the ASTRA Toolbox.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>intype</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) &#8211; Type of the ASTRA object.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a> &#8211; An ASTRA dict of type <tt class="docutils literal"><span class="pre">intype</span></tt>.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.creators.create_backprojection">
+<tt class="descclassname">astra.creators.</tt><tt class="descname">create_backprojection</tt><big>(</big><em>data</em>, <em>proj_id</em>, <em>useCUDA=False</em>, <em>returnData=True</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_backprojection"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_backprojection" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create a backprojection of a sinogram (2D).</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Sinogram data or ID.</li>
+<li><strong>proj_id</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of the projector to use.</li>
+<li><strong>useCUDA</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) &#8211; If <tt class="docutils literal"><span class="pre">True</span></tt>, use CUDA for the calculation.</li>
+<li><strong>returnData</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) &#8211; If False, only return the ID of the backprojection.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>, <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; If <tt class="docutils literal"><span class="pre">returnData=False</span></tt>, returns the ID of the backprojection. Otherwise, returns a tuple containing the ID of the backprojection and the backprojection itself, in that order.</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.creators.create_backprojection3d_gpu">
+<tt class="descclassname">astra.creators.</tt><tt class="descname">create_backprojection3d_gpu</tt><big>(</big><em>data</em>, <em>proj_geom</em>, <em>vol_geom</em>, <em>returnData=True</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_backprojection3d_gpu"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_backprojection3d_gpu" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create a backprojection of a sinogram (3D) using CUDA.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Sinogram data or ID.</li>
+<li><strong>proj_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Projection geometry.</li>
+<li><strong>vol_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Volume geometry.</li>
+<li><strong>returnData</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) &#8211; If False, only return the ID of the backprojection.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>, <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; If <tt class="docutils literal"><span class="pre">returnData=False</span></tt>, returns the ID of the backprojection. Otherwise, returns a tuple containing the ID of the backprojection and the backprojection itself, in that order.</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.creators.create_proj_geom">
+<tt class="descclassname">astra.creators.</tt><tt class="descname">create_proj_geom</tt><big>(</big><em>intype</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_proj_geom"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_proj_geom" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create a projection geometry.</p>
+<p>This method can be called in a number of ways:</p>
+<p><tt class="docutils literal"><span class="pre">create_proj_geom('parallel',</span> <span class="pre">detector_spacing,</span> <span class="pre">det_count,</span> <span class="pre">angles)</span></tt>:</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>detector_spacing</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) &#8211; Distance between two adjacent detector pixels.</li>
+<li><strong>det_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of detector pixels.</li>
+<li><strong>angles</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Array of angles in radians.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A parallel projection geometry.</p>
+</td>
+</tr>
+</tbody>
+</table>
+<p><tt class="docutils literal"><span class="pre">create_proj_geom('fanflat',</span> <span class="pre">det_width,</span> <span class="pre">det_count,</span> <span class="pre">angles,</span> <span class="pre">source_origin,</span> <span class="pre">source_det)</span></tt>:</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>det_width</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) &#8211; Size of a detector pixel.</li>
+<li><strong>det_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of detector pixels.</li>
+<li><strong>angles</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Array of angles in radians.</li>
+<li><strong>source_origin</strong> &#8211; Position of the source.</li>
+<li><strong>source_det</strong> &#8211; Position of the detector</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A fan-beam projection geometry.</p>
+</td>
+</tr>
+</tbody>
+</table>
+<p><tt class="docutils literal"><span class="pre">create_proj_geom('fanflat_vec',</span> <span class="pre">det_count,</span> <span class="pre">V)</span></tt>:</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>det_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of detector pixels.</li>
+<li><strong>V</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Vector array.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A fan-beam projection geometry.</p>
+</td>
+</tr>
+</tbody>
+</table>
+<p><tt class="docutils literal"><span class="pre">create_proj_geom('parallel3d',</span> <span class="pre">detector_spacing_x,</span> <span class="pre">detector_spacing_y,</span> <span class="pre">det_row_count,</span> <span class="pre">det_col_count,</span> <span class="pre">angles)</span></tt>:</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>detector_spacing_*</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) &#8211; Distance between two adjacent detector pixels.</li>
+<li><strong>det_row_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of detector pixel rows.</li>
+<li><strong>det_col_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of detector pixel columns.</li>
+<li><strong>angles</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Array of angles in radians.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A parallel projection geometry.</p>
+</td>
+</tr>
+</tbody>
+</table>
+<p><tt class="docutils literal"><span class="pre">create_proj_geom('cone',</span> <span class="pre">detector_spacing_x,</span> <span class="pre">detector_spacing_y,</span> <span class="pre">det_row_count,</span> <span class="pre">det_col_count,</span> <span class="pre">angles,</span> <span class="pre">source_origin,</span> <span class="pre">source_det)</span></tt>:</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>detector_spacing_*</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) &#8211; Distance between two adjacent detector pixels.</li>
+<li><strong>det_row_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of detector pixel rows.</li>
+<li><strong>det_col_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of detector pixel columns.</li>
+<li><strong>angles</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Array of angles in radians.</li>
+<li><strong>source_origin</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) &#8211; Distance between point source and origin.</li>
+<li><strong>source_det</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) &#8211; Distance between the detector and origin.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A cone-beam projection geometry.</p>
+</td>
+</tr>
+</tbody>
+</table>
+<p><tt class="docutils literal"><span class="pre">create_proj_geom('cone_vec',</span> <span class="pre">det_row_count,</span> <span class="pre">det_col_count,</span> <span class="pre">V)</span></tt>:</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>det_row_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of detector pixel rows.</li>
+<li><strong>det_col_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of detector pixel columns.</li>
+<li><strong>V</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Vector array.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A cone-beam projection geometry.</p>
+</td>
+</tr>
+</tbody>
+</table>
+<p><tt class="docutils literal"><span class="pre">create_proj_geom('parallel3d_vec',</span> <span class="pre">det_row_count,</span> <span class="pre">det_col_count,</span> <span class="pre">V)</span></tt>:</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>det_row_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of detector pixel rows.</li>
+<li><strong>det_col_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of detector pixel columns.</li>
+<li><strong>V</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Vector array.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A parallel projection geometry.</p>
+</td>
+</tr>
+</tbody>
+</table>
+<p><tt class="docutils literal"><span class="pre">create_proj_geom('sparse_matrix',</span> <span class="pre">det_width,</span> <span class="pre">det_count,</span> <span class="pre">angles,</span> <span class="pre">matrix_id)</span></tt>:</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>det_width</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) &#8211; Size of a detector pixel.</li>
+<li><strong>det_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of detector pixels.</li>
+<li><strong>angles</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Array of angles in radians.</li>
+<li><strong>matrix_id</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of the sparse matrix.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A projection geometry based on a sparse matrix.</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.creators.create_projector">
+<tt class="descclassname">astra.creators.</tt><tt class="descname">create_projector</tt><big>(</big><em>proj_type</em>, <em>proj_geom</em>, <em>vol_geom</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_projector"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_projector" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create a 2D projector.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>proj_type</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) &#8211; Projector type, such as <tt class="docutils literal"><span class="pre">'line'</span></tt>, <tt class="docutils literal"><span class="pre">'linear'</span></tt>, ...</li>
+<li><strong>proj_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Projection geometry.</li>
+<li><strong>vol_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Volume geometry.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> &#8211; The ID of the projector.</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.creators.create_reconstruction">
+<tt class="descclassname">astra.creators.</tt><tt class="descname">create_reconstruction</tt><big>(</big><em>rec_type</em>, <em>proj_id</em>, <em>sinogram</em>, <em>iterations=1</em>, <em>use_mask='no'</em>, <em>mask=array([]</em>, <em>dtype=float64)</em>, <em>use_minc='no'</em>, <em>minc=0</em>, <em>use_maxc='no'</em>, <em>maxc=255</em>, <em>returnData=True</em>, <em>filterType=None</em>, <em>filterData=None</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_reconstruction"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_reconstruction" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create a reconstruction of a sinogram (2D).</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>rec_type</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) &#8211; Name of the reconstruction algorithm.</li>
+<li><strong>proj_id</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of the projector to use.</li>
+<li><strong>sinogram</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Sinogram data or ID.</li>
+<li><strong>iterations</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Number of iterations to run.</li>
+<li><strong>use_mask</strong> (<tt class="docutils literal"><span class="pre">'yes'</span></tt> or <tt class="docutils literal"><span class="pre">'no'</span></tt>) &#8211; Whether to use a mask.</li>
+<li><strong>mask</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Mask data or ID</li>
+<li><strong>use_minc</strong> (<tt class="docutils literal"><span class="pre">'yes'</span></tt> or <tt class="docutils literal"><span class="pre">'no'</span></tt>) &#8211; Whether to force a minimum value on the reconstruction pixels.</li>
+<li><strong>minc</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) &#8211; Minimum value to use.</li>
+<li><strong>use_maxc</strong> (<tt class="docutils literal"><span class="pre">'yes'</span></tt> or <tt class="docutils literal"><span class="pre">'no'</span></tt>) &#8211; Whether to force a maximum value on the reconstruction pixels.</li>
+<li><strong>maxc</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) &#8211; Maximum value to use.</li>
+<li><strong>returnData</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) &#8211; If False, only return the ID of the reconstruction.</li>
+<li><strong>filterType</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) &#8211; Which type of filter to use for filter-based methods.</li>
+<li><strong>filterData</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Optional filter data for filter-based methods.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>, <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; If <tt class="docutils literal"><span class="pre">returnData=False</span></tt>, returns the ID of the reconstruction. Otherwise, returns a tuple containing the ID of the reconstruction and reconstruction itself, in that order.</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.creators.create_sino">
+<tt class="descclassname">astra.creators.</tt><tt class="descname">create_sino</tt><big>(</big><em>data</em>, <em>proj_id=None</em>, <em>proj_geom=None</em>, <em>vol_geom=None</em>, <em>useCUDA=False</em>, <em>returnData=True</em>, <em>gpuIndex=None</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_sino"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_sino" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create a forward projection of an image (2D).</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Image data or ID.</li>
+<li><strong>proj_id</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of the projector to use.</li>
+<li><strong>proj_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Projection geometry.</li>
+<li><strong>vol_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Volume geometry.</li>
+<li><strong>useCUDA</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) &#8211; If <tt class="docutils literal"><span class="pre">True</span></tt>, use CUDA for the calculation.</li>
+<li><strong>returnData</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) &#8211; If False, only return the ID of the forward projection.</li>
+<li><strong>gpuIndex</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Optional GPU index.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>, <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>)</p>
+</td>
+</tr>
+</tbody>
+</table>
+<p>If <tt class="docutils literal"><span class="pre">returnData=False</span></tt>, returns the ID of the forward
+projection. Otherwise, returns a tuple containing the ID of the
+forward projection and the forward projection itself, in that
+order.</p>
+<p>The geometry of setup is defined by <tt class="docutils literal"><span class="pre">proj_id</span></tt> or with
+<tt class="docutils literal"><span class="pre">proj_geom</span></tt> and <tt class="docutils literal"><span class="pre">vol_geom</span></tt>. If <tt class="docutils literal"><span class="pre">proj_id</span></tt> is given, then
+<tt class="docutils literal"><span class="pre">proj_geom</span></tt> and <tt class="docutils literal"><span class="pre">vol_geom</span></tt> must be None and vice versa.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.creators.create_sino3d_gpu">
+<tt class="descclassname">astra.creators.</tt><tt class="descname">create_sino3d_gpu</tt><big>(</big><em>data</em>, <em>proj_geom</em>, <em>vol_geom</em>, <em>returnData=True</em>, <em>gpuIndex=None</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_sino3d_gpu"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_sino3d_gpu" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create a forward projection of an image (3D).</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Image data or ID.</li>
+<li><strong>proj_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Projection geometry.</li>
+<li><strong>vol_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Volume geometry.</li>
+<li><strong>returnData</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) &#8211; If False, only return the ID of the forward projection.</li>
+<li><strong>gpuIndex</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Optional GPU index.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>, <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; If <tt class="docutils literal"><span class="pre">returnData=False</span></tt>, returns the ID of the forward projection. Otherwise, returns a tuple containing the ID of the forward projection and the forward projection itself, in that order.</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.creators.create_vol_geom">
+<tt class="descclassname">astra.creators.</tt><tt class="descname">create_vol_geom</tt><big>(</big><em>*varargin</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_vol_geom"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_vol_geom" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create a volume geometry structure.</p>
+<p>This method can be called in a number of ways:</p>
+<dl class="docutils">
+<dt><tt class="docutils literal"><span class="pre">create_vol_geom(N)</span></tt>:</dt>
+<dd><table class="first last docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">returns:</th><td class="field-body">A 2D volume geometry of size <span class="math">\(N \times N\)</span>.</td>
+</tr>
+</tbody>
+</table>
+</dd>
+<dt><tt class="docutils literal"><span class="pre">create_vol_geom((M,</span> <span class="pre">N))</span></tt>:</dt>
+<dd><table class="first last docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">returns:</th><td class="field-body">A 2D volume geometry of size <span class="math">\(M \times N\)</span>.</td>
+</tr>
+</tbody>
+</table>
+</dd>
+<dt><tt class="docutils literal"><span class="pre">create_vol_geom(M,</span> <span class="pre">N)</span></tt>:</dt>
+<dd><table class="first last docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">returns:</th><td class="field-body">A 2D volume geometry of size <span class="math">\(M \times N\)</span>.</td>
+</tr>
+</tbody>
+</table>
+</dd>
+<dt><tt class="docutils literal"><span class="pre">create_vol_geom(M,</span> <span class="pre">N,</span> <span class="pre">minx,</span> <span class="pre">maxx,</span> <span class="pre">miny,</span> <span class="pre">maxy)</span></tt>:</dt>
+<dd><table class="first last docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">returns:</th><td class="field-body">A 2D volume geometry of size <span class="math">\(M \times N\)</span>, windowed as <span class="math">\(minx \leq x \leq maxx\)</span> and <span class="math">\(miny \leq y \leq maxy\)</span>.</td>
+</tr>
+</tbody>
+</table>
+</dd>
+<dt><tt class="docutils literal"><span class="pre">create_vol_geom((M,</span> <span class="pre">N,</span> <span class="pre">Z))</span></tt>:</dt>
+<dd><table class="first last docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">returns:</th><td class="field-body">A 3D volume geometry of size <span class="math">\(M \times N \times Z\)</span>.</td>
+</tr>
+</tbody>
+</table>
+</dd>
+<dt><tt class="docutils literal"><span class="pre">create_vol_geom(M,</span> <span class="pre">N,</span> <span class="pre">Z)</span></tt>:</dt>
+<dd><table class="first last docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">returns:</th><td class="field-body">A 3D volume geometry of size <span class="math">\(M \times N \times Z\)</span>.</td>
+</tr>
+</tbody>
+</table>
+</dd>
+</dl>
+</dd></dl>
+
+</div>
+
+
+ </div>
+ </div>
+ </div>
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+
+ <div class="section" id="module-astra.data2d">
+<span id="d-data-objects-the-data2d-module"></span><h1>2D data objects: the <tt class="xref py py-mod docutils literal"><span class="pre">data2d</span></tt> module<a class="headerlink" href="#module-astra.data2d" title="Permalink to this headline">¶</a></h1>
+<dl class="function">
+<dt id="astra.data2d.change_geometry">
+<tt class="descclassname">astra.data2d.</tt><tt class="descname">change_geometry</tt><big>(</big><em>i</em>, <em>geom</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#change_geometry"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.change_geometry" title="Permalink to this definition">¶</a></dt>
+<dd><p>Change the geometry of a 2D object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object.</li>
+<li><strong>geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; new geometry.</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data2d.clear">
+<tt class="descclassname">astra.data2d.</tt><tt class="descname">clear</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#clear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.clear" title="Permalink to this definition">¶</a></dt>
+<dd><p>Clear all 2D data objects.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data2d.create">
+<tt class="descclassname">astra.data2d.</tt><tt class="descname">create</tt><big>(</big><em>datatype</em>, <em>geometry</em>, <em>data=None</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#create"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.create" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create a 2D object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>datatype</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) &#8211; Data object type, &#8216;-vol&#8217; or &#8216;-sino&#8217;.</li>
+<li><strong>geometry</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Volume or projection geometry.</li>
+<li><strong>data</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a> or <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Data to fill the constructed object with, either a scalar or array.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> &#8211; the ID of the constructed object.</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data2d.delete">
+<tt class="descclassname">astra.data2d.</tt><tt class="descname">delete</tt><big>(</big><em>ids</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#delete"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.delete" title="Permalink to this definition">¶</a></dt>
+<dd><p>Delete a 2D object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>ids</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#list" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">list</span></tt></a>) &#8211; ID or list of ID&#8217;s to delete.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data2d.get">
+<tt class="descclassname">astra.data2d.</tt><tt class="descname">get</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#get"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.get" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get a 2D object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object to get.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> &#8211; The object data.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data2d.get_geometry">
+<tt class="descclassname">astra.data2d.</tt><tt class="descname">get_geometry</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#get_geometry"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.get_geometry" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get the geometry of a 2D object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a> &#8211; The geometry of object with ID <tt class="docutils literal"><span class="pre">i</span></tt>.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data2d.get_shared">
+<tt class="descclassname">astra.data2d.</tt><tt class="descname">get_shared</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#get_shared"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.get_shared" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get a 2D object with memory shared between the ASTRA toolbox and numpy array.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object to get.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> &#8211; The object data.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data2d.get_single">
+<tt class="descclassname">astra.data2d.</tt><tt class="descname">get_single</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#get_single"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.get_single" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get a 2D object in single precision.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object to get.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> &#8211; The object data.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data2d.info">
+<tt class="descclassname">astra.data2d.</tt><tt class="descname">info</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.info" title="Permalink to this definition">¶</a></dt>
+<dd><p>Print info on 2D objects in memory.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data2d.store">
+<tt class="descclassname">astra.data2d.</tt><tt class="descname">store</tt><big>(</big><em>i</em>, <em>data</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#store"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.store" title="Permalink to this definition">¶</a></dt>
+<dd><p>Fill existing 2D object with data.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object to fill.</li>
+<li><strong>data</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a> or <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Data to fill the object with, either a scalar or array.</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+</div>
+
+
+ </div>
+ </div>
+ </div>
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+
+ <div class="section" id="module-astra.data3d">
+<span id="d-data-objects-the-data3d-module"></span><h1>3D data objects: the <tt class="xref py py-mod docutils literal"><span class="pre">data3d</span></tt> module<a class="headerlink" href="#module-astra.data3d" title="Permalink to this headline">¶</a></h1>
+<dl class="function">
+<dt id="astra.data3d.clear">
+<tt class="descclassname">astra.data3d.</tt><tt class="descname">clear</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#clear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.clear" title="Permalink to this definition">¶</a></dt>
+<dd><p>Clear all 3D data objects.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data3d.create">
+<tt class="descclassname">astra.data3d.</tt><tt class="descname">create</tt><big>(</big><em>datatype</em>, <em>geometry</em>, <em>data=None</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#create"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.create" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create a 3D object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>datatype</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) &#8211; Data object type, &#8216;-vol&#8217; or &#8216;-sino&#8217;.</li>
+<li><strong>geometry</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Volume or projection geometry.</li>
+<li><strong>data</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a> or <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Data to fill the constructed object with, either a scalar or array.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> &#8211; the ID of the constructed object.</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data3d.delete">
+<tt class="descclassname">astra.data3d.</tt><tt class="descname">delete</tt><big>(</big><em>ids</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#delete"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.delete" title="Permalink to this definition">¶</a></dt>
+<dd><p>Delete a 2D object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>ids</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#list" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">list</span></tt></a>) &#8211; ID or list of ID&#8217;s to delete.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data3d.dimensions">
+<tt class="descclassname">astra.data3d.</tt><tt class="descname">dimensions</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#dimensions"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.dimensions" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get dimensions of a 3D object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><tt class="xref py py-class docutils literal"><span class="pre">tuple</span></tt> &#8211; dimensions of object with ID <tt class="docutils literal"><span class="pre">i</span></tt>.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data3d.get">
+<tt class="descclassname">astra.data3d.</tt><tt class="descname">get</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#get"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.get" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get a 3D object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object to get.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> &#8211; The object data.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data3d.get_shared">
+<tt class="descclassname">astra.data3d.</tt><tt class="descname">get_shared</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#get_shared"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.get_shared" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get a 3D object with memory shared between the ASTRA toolbox and numpy array.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object to get.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> &#8211; The object data.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data3d.get_single">
+<tt class="descclassname">astra.data3d.</tt><tt class="descname">get_single</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#get_single"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.get_single" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get a 3D object in single precision.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object to get.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> &#8211; The object data.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data3d.info">
+<tt class="descclassname">astra.data3d.</tt><tt class="descname">info</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.info" title="Permalink to this definition">¶</a></dt>
+<dd><p>Print info on 3D objects in memory.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.data3d.store">
+<tt class="descclassname">astra.data3d.</tt><tt class="descname">store</tt><big>(</big><em>i</em>, <em>data</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#store"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.store" title="Permalink to this definition">¶</a></dt>
+<dd><p>Fill existing 3D object with data.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object to fill.</li>
+<li><strong>data</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a> or <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Data to fill the object with, either a scalar or array.</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+</div>
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+
+ <div class="section" id="module-astra.functions">
+<span id="additional-functions-the-functions-module"></span><h1>Additional functions: the <tt class="xref py py-mod docutils literal"><span class="pre">functions</span></tt> module<a class="headerlink" href="#module-astra.functions" title="Permalink to this headline">¶</a></h1>
+<p>Additional functions for PyAstraToolbox.</p>
+<dl class="function">
+<dt id="astra.functions.add_noise_to_sino">
+<tt class="descclassname">astra.functions.</tt><tt class="descname">add_noise_to_sino</tt><big>(</big><em>sinogram_in</em>, <em>I0</em>, <em>seed=None</em><big>)</big><a class="reference internal" href="_modules/astra/functions.html#add_noise_to_sino"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.functions.add_noise_to_sino" title="Permalink to this definition">¶</a></dt>
+<dd><p>Adds Poisson noise to a sinogram.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>sinogram_in</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) &#8211; Sinogram to add noise to.</li>
+<li><strong>I0</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) &#8211; Background intensity. Lower values lead to higher noise.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> &#8211; the sinogram with added noise.</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.functions.clear">
+<tt class="descclassname">astra.functions.</tt><tt class="descname">clear</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/functions.html#clear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.functions.clear" title="Permalink to this definition">¶</a></dt>
+<dd><p>Clears all used memory of the ASTRA Toolbox.</p>
+<div class="admonition note">
+<p class="first admonition-title">Note</p>
+<p class="last">This is irreversible.</p>
+</div>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.functions.data_op">
+<tt class="descclassname">astra.functions.</tt><tt class="descname">data_op</tt><big>(</big><em>op</em>, <em>data</em>, <em>scalar</em>, <em>gpu_core</em>, <em>mask=None</em><big>)</big><a class="reference internal" href="_modules/astra/functions.html#data_op"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.functions.data_op" title="Permalink to this definition">¶</a></dt>
+<dd><p>Perform data operation on data.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>op</strong> &#8211; Operation to perform.</li>
+<li><strong>data</strong> &#8211; Data to perform operation on.</li>
+<li><strong>scalar</strong> &#8211; Scalar argument to data operation.</li>
+<li><strong>gpu_core</strong> &#8211; GPU core to perform operation on.</li>
+<li><strong>mask</strong> &#8211; Optional mask.</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.functions.geom_2vec">
+<tt class="descclassname">astra.functions.</tt><tt class="descname">geom_2vec</tt><big>(</big><em>proj_geom</em><big>)</big><a class="reference internal" href="_modules/astra/functions.html#geom_2vec"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.functions.geom_2vec" title="Permalink to this definition">¶</a></dt>
+<dd><p>Returns a vector-based projection geometry from a basic projection geometry.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>proj_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Projection geometry to convert</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.functions.geom_size">
+<tt class="descclassname">astra.functions.</tt><tt class="descname">geom_size</tt><big>(</big><em>geom</em>, <em>dim=None</em><big>)</big><a class="reference internal" href="_modules/astra/functions.html#geom_size"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.functions.geom_size" title="Permalink to this definition">¶</a></dt>
+<dd><p>Returns the size of a volume or sinogram, based on the projection or volume geometry.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>geom</strong> &#8211; Geometry to calculate size from</li>
+<li><strong>dim</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; Optional axis index to return</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.functions.move_vol_geom">
+<tt class="descclassname">astra.functions.</tt><tt class="descname">move_vol_geom</tt><big>(</big><em>geom</em>, <em>pos</em>, <em>is_relative=False</em><big>)</big><a class="reference internal" href="_modules/astra/functions.html#move_vol_geom"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.functions.move_vol_geom" title="Permalink to this definition">¶</a></dt>
+<dd><p>Moves center of volume geometry to new position.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Input volume geometry</li>
+<li><strong>pos</strong> (<tt class="xref py py-class docutils literal"><span class="pre">tuple</span></tt>) &#8211; Tuple (x,y[,z]) for new position, with the center of the image at (0,0[,0])</li>
+<li><strong>is_relative</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) &#8211; Whether new position is relative to the old position</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a> &#8211; Volume geometry with the new center</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+</div>
+
+
+ </div>
+ </div>
+ </div>
+ <div class="sphinxsidebar">
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+ <h4>Previous topic</h4>
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+ title="previous chapter">Creation of objects: the <tt class="docutils literal"><span class="pre">creators</span></tt> module</a></p>
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+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="functions.html#astra.functions.add_noise_to_sino">add_noise_to_sino() (in module astra.functions)</a>
+ </dt>
+
+
+ <dt><a href="matlab.html#astra.matlab.algorithm">algorithm() (in module astra.matlab)</a>
+ </dt>
+
+
+ <dt><a href="matlab.html#astra.matlab.astra">astra() (in module astra.matlab)</a>
+ </dt>
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+
+ <dt><a href="algorithm.html#module-astra.algorithm">astra.algorithm (module)</a>
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+
+ <dt><a href="astra.html#module-astra.astra">astra.astra (module)</a>
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+ <dt><a href="ASTRAProjector.html#module-astra.ASTRAProjector">astra.ASTRAProjector (module)</a>
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+ <dt><a href="data2d.html#module-astra.data2d">astra.data2d (module)</a>
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+ </dl></td>
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+
+ <dt><a href="data3d.html#module-astra.data3d">astra.data3d (module)</a>
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+
+ <dt><a href="functions.html#module-astra.functions">astra.functions (module)</a>
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+ </dt>
+
+
+ <dt><a href="creators.html#astra.creators.astra_dict">astra_dict() (in module astra.creators)</a>
+ </dt>
+
+
+ <dt><a href="ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D">ASTRAProjector2D (class in astra.ASTRAProjector)</a>
+ </dt>
+
+
+ <dt><a href="ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2DTranspose">ASTRAProjector2DTranspose (class in astra.ASTRAProjector)</a>
+ </dt>
+
+ </dl></td>
+</tr></table>
+
+<h2 id="B">B</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D.backProject">backProject() (astra.ASTRAProjector.ASTRAProjector2D method)</a>
+ </dt>
+
+ </dl></td>
+</tr></table>
+
+<h2 id="C">C</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="data2d.html#astra.data2d.change_geometry">change_geometry() (in module astra.data2d)</a>
+ </dt>
+
+
+ <dt><a href="algorithm.html#astra.algorithm.clear">clear() (in module astra.algorithm)</a>
+ </dt>
+
+ <dd><dl>
+
+ <dt><a href="data2d.html#astra.data2d.clear">(in module astra.data2d)</a>
+ </dt>
+
+
+ <dt><a href="data3d.html#astra.data3d.clear">(in module astra.data3d)</a>
+ </dt>
+
+
+ <dt><a href="functions.html#astra.functions.clear">(in module astra.functions)</a>
+ </dt>
+
+
+ <dt><a href="matrix.html#astra.matrix.clear">(in module astra.matrix)</a>
+ </dt>
+
+
+ <dt><a href="projector.html#astra.projector.clear">(in module astra.projector)</a>
+ </dt>
+
+ </dl></dd>
+
+ <dt><a href="algorithm.html#astra.algorithm.create">create() (in module astra.algorithm)</a>
+ </dt>
+
+ <dd><dl>
+
+ <dt><a href="data2d.html#astra.data2d.create">(in module astra.data2d)</a>
+ </dt>
+
+
+ <dt><a href="data3d.html#astra.data3d.create">(in module astra.data3d)</a>
+ </dt>
+
+
+ <dt><a href="matrix.html#astra.matrix.create">(in module astra.matrix)</a>
+ </dt>
+
+
+ <dt><a href="projector.html#astra.projector.create">(in module astra.projector)</a>
+ </dt>
+
+ </dl></dd>
+
+ <dt><a href="creators.html#astra.creators.create_backprojection">create_backprojection() (in module astra.creators)</a>
+ </dt>
+
+
+ <dt><a href="creators.html#astra.creators.create_backprojection3d_gpu">create_backprojection3d_gpu() (in module astra.creators)</a>
+ </dt>
+
+
+ <dt><a href="creators.html#astra.creators.create_proj_geom">create_proj_geom() (in module astra.creators)</a>
+ </dt>
+
+ </dl></td>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="creators.html#astra.creators.create_projector">create_projector() (in module astra.creators)</a>
+ </dt>
+
+
+ <dt><a href="creators.html#astra.creators.create_reconstruction">create_reconstruction() (in module astra.creators)</a>
+ </dt>
+
+
+ <dt><a href="creators.html#astra.creators.create_sino">create_sino() (in module astra.creators)</a>
+ </dt>
+
+
+ <dt><a href="creators.html#astra.creators.create_sino3d_gpu">create_sino3d_gpu() (in module astra.creators)</a>
+ </dt>
+
+
+ <dt><a href="creators.html#astra.creators.create_vol_geom">create_vol_geom() (in module astra.creators)</a>
+ </dt>
+
+
+ <dt><a href="astra.html#astra.astra.credits">credits() (in module astra.astra)</a>
+ </dt>
+
+ </dl></td>
+</tr></table>
+
+<h2 id="D">D</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="matlab.html#astra.matlab.data2d">data2d() (in module astra.matlab)</a>
+ </dt>
+
+
+ <dt><a href="matlab.html#astra.matlab.data3d">data3d() (in module astra.matlab)</a>
+ </dt>
+
+
+ <dt><a href="functions.html#astra.functions.data_op">data_op() (in module astra.functions)</a>
+ </dt>
+
+ </dl></td>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="algorithm.html#astra.algorithm.delete">delete() (in module astra.algorithm)</a>
+ </dt>
+
+ <dd><dl>
+
+ <dt><a href="data2d.html#astra.data2d.delete">(in module astra.data2d)</a>
+ </dt>
+
+
+ <dt><a href="data3d.html#astra.data3d.delete">(in module astra.data3d)</a>
+ </dt>
+
+
+ <dt><a href="matrix.html#astra.matrix.delete">(in module astra.matrix)</a>
+ </dt>
+
+
+ <dt><a href="projector.html#astra.projector.delete">(in module astra.projector)</a>
+ </dt>
+
+ </dl></dd>
+
+ <dt><a href="data3d.html#astra.data3d.dimensions">dimensions() (in module astra.data3d)</a>
+ </dt>
+
+ </dl></td>
+</tr></table>
+
+<h2 id="F">F</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D.forwardProject">forwardProject() (astra.ASTRAProjector.ASTRAProjector2D method)</a>
+ </dt>
+
+ </dl></td>
+</tr></table>
+
+<h2 id="G">G</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="functions.html#astra.functions.geom_2vec">geom_2vec() (in module astra.functions)</a>
+ </dt>
+
+
+ <dt><a href="functions.html#astra.functions.geom_size">geom_size() (in module astra.functions)</a>
+ </dt>
+
+
+ <dt><a href="data2d.html#astra.data2d.get">get() (in module astra.data2d)</a>
+ </dt>
+
+ <dd><dl>
+
+ <dt><a href="data3d.html#astra.data3d.get">(in module astra.data3d)</a>
+ </dt>
+
+
+ <dt><a href="matrix.html#astra.matrix.get">(in module astra.matrix)</a>
+ </dt>
+
+ </dl></dd>
+
+ <dt><a href="data2d.html#astra.data2d.get_geometry">get_geometry() (in module astra.data2d)</a>
+ </dt>
+
+ </dl></td>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="algorithm.html#astra.algorithm.get_res_norm">get_res_norm() (in module astra.algorithm)</a>
+ </dt>
+
+
+ <dt><a href="data2d.html#astra.data2d.get_shared">get_shared() (in module astra.data2d)</a>
+ </dt>
+
+ <dd><dl>
+
+ <dt><a href="data3d.html#astra.data3d.get_shared">(in module astra.data3d)</a>
+ </dt>
+
+ </dl></dd>
+
+ <dt><a href="data2d.html#astra.data2d.get_single">get_single() (in module astra.data2d)</a>
+ </dt>
+
+ <dd><dl>
+
+ <dt><a href="data3d.html#astra.data3d.get_single">(in module astra.data3d)</a>
+ </dt>
+
+ </dl></dd>
+
+ <dt><a href="matrix.html#astra.matrix.get_size">get_size() (in module astra.matrix)</a>
+ </dt>
+
+ </dl></td>
+</tr></table>
+
+<h2 id="I">I</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="algorithm.html#astra.algorithm.info">info() (in module astra.algorithm)</a>
+ </dt>
+
+ <dd><dl>
+
+ <dt><a href="data2d.html#astra.data2d.info">(in module astra.data2d)</a>
+ </dt>
+
+
+ <dt><a href="data3d.html#astra.data3d.info">(in module astra.data3d)</a>
+ </dt>
+
+
+ <dt><a href="matrix.html#astra.matrix.info">(in module astra.matrix)</a>
+ </dt>
+
+
+ <dt><a href="projector.html#astra.projector.info">(in module astra.projector)</a>
+ </dt>
+
+ </dl></dd>
+ </dl></td>
+</tr></table>
+
+<h2 id="M">M</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="matlab.html#astra.matlab.matrix">matrix() (in module astra.matlab)</a>
+ </dt>
+
+ <dd><dl>
+
+ <dt><a href="projector.html#astra.projector.matrix">(in module astra.projector)</a>
+ </dt>
+
+ </dl></dd>
+ </dl></td>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="functions.html#astra.functions.move_vol_geom">move_vol_geom() (in module astra.functions)</a>
+ </dt>
+
+ </dl></td>
+</tr></table>
+
+<h2 id="P">P</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="projector.html#astra.projector.projection_geometry">projection_geometry() (in module astra.projector)</a>
+ </dt>
+
+ </dl></td>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="matlab.html#astra.matlab.projector">projector() (in module astra.matlab)</a>
+ </dt>
+
+ </dl></td>
+</tr></table>
+
+<h2 id="R">R</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D.reconstruct">reconstruct() (astra.ASTRAProjector.ASTRAProjector2D method)</a>
+ </dt>
+
+ </dl></td>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="algorithm.html#astra.algorithm.run">run() (in module astra.algorithm)</a>
+ </dt>
+
+ </dl></td>
+</tr></table>
+
+<h2 id="S">S</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="astra.html#astra.astra.set_gpu_index">set_gpu_index() (in module astra.astra)</a>
+ </dt>
+
+
+ <dt><a href="projector.html#astra.projector.splat">splat() (in module astra.projector)</a>
+ </dt>
+
+ </dl></td>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="data2d.html#astra.data2d.store">store() (in module astra.data2d)</a>
+ </dt>
+
+ <dd><dl>
+
+ <dt><a href="data3d.html#astra.data3d.store">(in module astra.data3d)</a>
+ </dt>
+
+
+ <dt><a href="matrix.html#astra.matrix.store">(in module astra.matrix)</a>
+ </dt>
+
+ </dl></dd>
+ </dl></td>
+</tr></table>
+
+<h2 id="U">U</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="astra.html#astra.astra.use_cuda">use_cuda() (in module astra.astra)</a>
+ </dt>
+
+ </dl></td>
+</tr></table>
+
+<h2 id="V">V</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="astra.html#astra.astra.version">version() (in module astra.astra)</a>
+ </dt>
+
+ </dl></td>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="projector.html#astra.projector.volume_geometry">volume_geometry() (in module astra.projector)</a>
+ </dt>
+
+ </dl></td>
+</tr></table>
+
+<h2 id="W">W</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="projector.html#astra.projector.weights_projection">weights_projection() (in module astra.projector)</a>
+ </dt>
+
+ </dl></td>
+ <td style="width: 33%" valign="top"><dl>
+
+ <dt><a href="projector.html#astra.projector.weights_single_ray">weights_single_ray() (in module astra.projector)</a>
+ </dt>
+
+ </dl></td>
+</tr></table>
+
+
+
+ </div>
+ </div>
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+<h1>Welcome to PyASTRAToolbox&#8217;s documentation!<a class="headerlink" href="#welcome-to-pyastratoolbox-s-documentation" title="Permalink to this headline">¶</a></h1>
+<p>Contents:</p>
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+<ul>
+<li class="toctree-l1"><a class="reference internal" href="data2d.html">2D data objects: the <tt class="docutils literal"><span class="pre">data2d</span></tt> module</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="projector.html">Projector object: the <tt class="docutils literal"><span class="pre">projector</span></tt> module</a></li>
+<li class="toctree-l1"><a class="reference internal" href="algorithm.html">Algorithms: the <tt class="docutils literal"><span class="pre">algorithm</span></tt> module</a></li>
+<li class="toctree-l1"><a class="reference internal" href="matrix.html">Sparse matrices: the <tt class="docutils literal"><span class="pre">matrix</span></tt> module</a></li>
+<li class="toctree-l1"><a class="reference internal" href="creators.html">Creation of objects: the <tt class="docutils literal"><span class="pre">creators</span></tt> module</a></li>
+<li class="toctree-l1"><a class="reference internal" href="functions.html">Additional functions: the <tt class="docutils literal"><span class="pre">functions</span></tt> module</a></li>
+<li class="toctree-l1"><a class="reference internal" href="ASTRAProjector.html">Helper class: the <tt class="docutils literal"><span class="pre">ASTRAProjector</span></tt> module</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="astra.html">Additional ASTRA methods: the <tt class="docutils literal"><span class="pre">astra</span></tt> module</a></li>
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+</div>
+</div>
+<div class="section" id="indices-and-tables">
+<h1>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Permalink to this headline">¶</a></h1>
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+
+ <div class="section" id="module-astra.matlab">
+<span id="matlab-compatibility-interface-the-matlab-module"></span><h1>MATLAB compatibility interface: the <tt class="xref py py-mod docutils literal"><span class="pre">matlab</span></tt> module<a class="headerlink" href="#module-astra.matlab" title="Permalink to this headline">¶</a></h1>
+<p>This module implements a MATLAB-like interface to the ASTRA Toolbox.</p>
+<p>Note that all functions are called with a <tt class="xref py py-class docutils literal"><span class="pre">string</span></tt> as the first
+argument, specifying the operation to perform. This un-pythonic way
+is used to make transitioning from MATLAB code to Python code easier, as
+the MATLAB interface uses the same type of method calling.</p>
+<p>After an initial <tt class="docutils literal"><span class="pre">import</span> <span class="pre">astra</span></tt>, these functions can be accessed in the
+<tt class="docutils literal"><span class="pre">astra.m</span></tt> module.</p>
+<dl class="function">
+<dt id="astra.matlab.algorithm">
+<tt class="descclassname">astra.matlab.</tt><tt class="descname">algorithm</tt><big>(</big><em>command</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/matlab.html#algorithm"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matlab.algorithm" title="Permalink to this definition">¶</a></dt>
+<dd><p>MATLAB-like interface to the <a class="reference internal" href="algorithm.html#module-astra.algorithm" title="astra.algorithm"><tt class="xref py py-mod docutils literal"><span class="pre">astra.algorithm</span></tt></a> module</p>
+<p>For example:</p>
+<p><tt class="docutils literal"><span class="pre">astra.m.algorithm('run',i,1000)</span></tt> &#8211; Run an algorithm with 1000 iterations.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.matlab.astra">
+<tt class="descclassname">astra.matlab.</tt><tt class="descname">astra</tt><big>(</big><em>command</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/matlab.html#astra"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matlab.astra" title="Permalink to this definition">¶</a></dt>
+<dd><p>MATLAB-like interface to the <a class="reference internal" href="astra.html#module-astra.astra" title="astra.astra"><tt class="xref py py-mod docutils literal"><span class="pre">astra.astra</span></tt></a> module</p>
+<p>For example:</p>
+<p><tt class="docutils literal"><span class="pre">astra.m.astra('use_cuda')</span></tt> &#8211; Check if CUDA is enabled.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.matlab.data2d">
+<tt class="descclassname">astra.matlab.</tt><tt class="descname">data2d</tt><big>(</big><em>command</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/matlab.html#data2d"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matlab.data2d" title="Permalink to this definition">¶</a></dt>
+<dd><p>MATLAB-like interface to the <a class="reference internal" href="data2d.html#module-astra.data2d" title="astra.data2d"><tt class="xref py py-mod docutils literal"><span class="pre">astra.data2d</span></tt></a> module</p>
+<p>For example:</p>
+<p><tt class="docutils literal"><span class="pre">astra.m.data2d('create',type,geometry,data)</span></tt> &#8211; Create a 2D object.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.matlab.data3d">
+<tt class="descclassname">astra.matlab.</tt><tt class="descname">data3d</tt><big>(</big><em>command</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/matlab.html#data3d"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matlab.data3d" title="Permalink to this definition">¶</a></dt>
+<dd><p>MATLAB-like interface to the <a class="reference internal" href="data3d.html#module-astra.data3d" title="astra.data3d"><tt class="xref py py-mod docutils literal"><span class="pre">astra.data3d</span></tt></a> module</p>
+<p>For example:</p>
+<p><tt class="docutils literal"><span class="pre">astra.m.data3d('get',i)</span></tt> &#8211; Get 3D object data.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.matlab.matrix">
+<tt class="descclassname">astra.matlab.</tt><tt class="descname">matrix</tt><big>(</big><em>command</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/matlab.html#matrix"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matlab.matrix" title="Permalink to this definition">¶</a></dt>
+<dd><p>MATLAB-like interface to the <a class="reference internal" href="matrix.html#module-astra.matrix" title="astra.matrix"><tt class="xref py py-mod docutils literal"><span class="pre">astra.matrix</span></tt></a> module</p>
+<p>For example:</p>
+<p><tt class="docutils literal"><span class="pre">astra.m.matrix('delete',i)</span></tt> &#8211; Delete a matrix.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.matlab.projector">
+<tt class="descclassname">astra.matlab.</tt><tt class="descname">projector</tt><big>(</big><em>command</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/matlab.html#projector"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matlab.projector" title="Permalink to this definition">¶</a></dt>
+<dd><p>MATLAB-like interface to the <a class="reference internal" href="projector.html#module-astra.projector" title="astra.projector"><tt class="xref py py-mod docutils literal"><span class="pre">astra.projector</span></tt></a> module</p>
+<p>For example:</p>
+<p><tt class="docutils literal"><span class="pre">astra.m.projector('volume_geometry',i)</span></tt> &#8211; Get volume geometry.</p>
+</dd></dl>
+
+</div>
+
+
+ </div>
+ </div>
+ </div>
+ <div class="sphinxsidebar">
+ <div class="sphinxsidebarwrapper">
+ <h4>Previous topic</h4>
+ <p class="topless"><a href="ASTRAProjector.html"
+ title="previous chapter">Helper class: the <tt class="docutils literal"><span class="pre">ASTRAProjector</span></tt> module</a></p>
+ <h4>Next topic</h4>
+ <p class="topless"><a href="astra.html"
+ title="next chapter">Additional ASTRA methods: the <tt class="docutils literal"><span class="pre">astra</span></tt> module</a></p>
+ <h3>This Page</h3>
+ <ul class="this-page-menu">
+ <li><a href="_sources/matlab.txt"
+ rel="nofollow">Show Source</a></li>
+ </ul>
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+ Enter search terms or a module, class or function name.
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+ >modules</a> |</li>
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+ <a href="astra.html" title="Additional ASTRA methods: the astra module"
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diff --git a/python/docSRC/_build/html/matrix.html b/python/docSRC/_build/html/matrix.html
new file mode 100644
index 0000000..1df4c30
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+ <title>Sparse matrices: the matrix module &mdash; PyASTRAToolbox 1.6 documentation</title>
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+
+ <div class="section" id="module-astra.matrix">
+<span id="sparse-matrices-the-matrix-module"></span><h1>Sparse matrices: the <tt class="xref py py-mod docutils literal"><span class="pre">matrix</span></tt> module<a class="headerlink" href="#module-astra.matrix" title="Permalink to this headline">¶</a></h1>
+<dl class="function">
+<dt id="astra.matrix.clear">
+<tt class="descclassname">astra.matrix.</tt><tt class="descname">clear</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#clear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.clear" title="Permalink to this definition">¶</a></dt>
+<dd><p>Clear all matrix objects.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.matrix.create">
+<tt class="descclassname">astra.matrix.</tt><tt class="descname">create</tt><big>(</big><em>data</em><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#create"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.create" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create matrix object with data.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>data</strong> (<tt class="xref py py-class docutils literal"><span class="pre">scipy.sparse.csr_matrix</span></tt>) &#8211; Data to fill the created object with.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> &#8211; the ID of the constructed object.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.matrix.delete">
+<tt class="descclassname">astra.matrix.</tt><tt class="descname">delete</tt><big>(</big><em>ids</em><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#delete"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.delete" title="Permalink to this definition">¶</a></dt>
+<dd><p>Delete a matrix object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>ids</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#list" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">list</span></tt></a>) &#8211; ID or list of ID&#8217;s to delete.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.matrix.get">
+<tt class="descclassname">astra.matrix.</tt><tt class="descname">get</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#get"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.get" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get a matrix object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object to get.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><tt class="xref py py-class docutils literal"><span class="pre">scipy.sparse.csr_matrix</span></tt> &#8211; The object data.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.matrix.get_size">
+<tt class="descclassname">astra.matrix.</tt><tt class="descname">get_size</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#get_size"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.get_size" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get matrix dimensions.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><tt class="xref py py-class docutils literal"><span class="pre">tuple</span></tt> &#8211; matrix dimensions.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.matrix.info">
+<tt class="descclassname">astra.matrix.</tt><tt class="descname">info</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.info" title="Permalink to this definition">¶</a></dt>
+<dd><p>Print info on matrix objects in memory.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.matrix.store">
+<tt class="descclassname">astra.matrix.</tt><tt class="descname">store</tt><big>(</big><em>i</em>, <em>data</em><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#store"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.store" title="Permalink to this definition">¶</a></dt>
+<dd><p>Fill existing matrix object with data.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
+<li><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of object to fill.</li>
+<li><strong>data</strong> (<tt class="xref py py-class docutils literal"><span class="pre">scipy.sparse.csr_matrix</span></tt>) &#8211; Data to fill the object with.</li>
+</ul>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+</div>
+
+
+ </div>
+ </div>
+ </div>
+ <div class="sphinxsidebar">
+ <div class="sphinxsidebarwrapper">
+ <h4>Previous topic</h4>
+ <p class="topless"><a href="algorithm.html"
+ title="previous chapter">Algorithms: the <tt class="docutils literal"><span class="pre">algorithm</span></tt> module</a></p>
+ <h4>Next topic</h4>
+ <p class="topless"><a href="creators.html"
+ title="next chapter">Creation of objects: the <tt class="docutils literal"><span class="pre">creators</span></tt> module</a></p>
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+
+ <div class="section" id="module-astra.projector">
+<span id="projector-object-the-projector-module"></span><h1>Projector object: the <tt class="xref py py-mod docutils literal"><span class="pre">projector</span></tt> module<a class="headerlink" href="#module-astra.projector" title="Permalink to this headline">¶</a></h1>
+<dl class="function">
+<dt id="astra.projector.clear">
+<tt class="descclassname">astra.projector.</tt><tt class="descname">clear</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/projector.html#clear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.clear" title="Permalink to this definition">¶</a></dt>
+<dd><p>Clear all projector objects.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.projector.create">
+<tt class="descclassname">astra.projector.</tt><tt class="descname">create</tt><big>(</big><em>config</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#create"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.create" title="Permalink to this definition">¶</a></dt>
+<dd><p>Create projector object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>config</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) &#8211; Projector options.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> &#8211; the ID of the constructed object.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.projector.delete">
+<tt class="descclassname">astra.projector.</tt><tt class="descname">delete</tt><big>(</big><em>ids</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#delete"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.delete" title="Permalink to this definition">¶</a></dt>
+<dd><p>Delete a projector object.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>ids</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#list" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">list</span></tt></a>) &#8211; ID or list of ID&#8217;s to delete.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.projector.info">
+<tt class="descclassname">astra.projector.</tt><tt class="descname">info</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/projector.html#info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.info" title="Permalink to this definition">¶</a></dt>
+<dd><p>Print info on projector objects in memory.</p>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.projector.matrix">
+<tt class="descclassname">astra.projector.</tt><tt class="descname">matrix</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#matrix"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.matrix" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get sparse matrix of a projector.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of projector.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> &#8211; ID of sparse matrix.</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.projector.projection_geometry">
+<tt class="descclassname">astra.projector.</tt><tt class="descname">projection_geometry</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#projection_geometry"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.projection_geometry" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get projection geometry of a projector.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of projector.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a> &#8211; projection geometry</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.projector.splat">
+<tt class="descclassname">astra.projector.</tt><tt class="descname">splat</tt><big>(</big><em>i</em>, <em>row</em>, <em>col</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#splat"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.splat" title="Permalink to this definition">¶</a></dt>
+<dd></dd></dl>
+
+<dl class="function">
+<dt id="astra.projector.volume_geometry">
+<tt class="descclassname">astra.projector.</tt><tt class="descname">volume_geometry</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#volume_geometry"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.volume_geometry" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get volume geometry of a projector.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) &#8211; ID of projector.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a> &#8211; volume geometry</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
+
+<dl class="function">
+<dt id="astra.projector.weights_projection">
+<tt class="descclassname">astra.projector.</tt><tt class="descname">weights_projection</tt><big>(</big><em>i</em>, <em>projection_index</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#weights_projection"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.weights_projection" title="Permalink to this definition">¶</a></dt>
+<dd></dd></dl>
+
+<dl class="function">
+<dt id="astra.projector.weights_single_ray">
+<tt class="descclassname">astra.projector.</tt><tt class="descname">weights_single_ray</tt><big>(</big><em>i</em>, <em>projection_index</em>, <em>detector_index</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#weights_single_ray"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.weights_single_ray" title="Permalink to this definition">¶</a></dt>
+<dd></dd></dl>
+
+</div>
+
+
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+ ga('create', 'UA-40340335-1', 'dmpelt.github.io');
+ ga('send', 'pageview');
+
+</script>
+
+ </body>
+</html> \ No newline at end of file
diff --git a/python/docSRC/_build/html/search.html b/python/docSRC/_build/html/search.html
new file mode 100644
index 0000000..ac8ee73
--- /dev/null
+++ b/python/docSRC/_build/html/search.html
@@ -0,0 +1,118 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+
+
+<html xmlns="http://www.w3.org/1999/xhtml">
+ <head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+
+ <title>Search &mdash; PyASTRAToolbox 1.6 documentation</title>
+
+ <link rel="stylesheet" href="_static/default.css" type="text/css" />
+ <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT: './',
+ VERSION: '1.6',
+ COLLAPSE_INDEX: false,
+ FILE_SUFFIX: '.html',
+ HAS_SOURCE: true
+ };
+ </script>
+ <script type="text/javascript" src="_static/jquery.js"></script>
+ <script type="text/javascript" src="_static/underscore.js"></script>
+ <script type="text/javascript" src="_static/doctools.js"></script>
+ <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
+ <script type="text/javascript" src="_static/searchtools.js"></script>
+ <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="index.html" />
+ <script type="text/javascript">
+ jQuery(function() { Search.loadIndex("searchindex.js"); });
+ </script>
+
+ <script type="text/javascript" id="searchindexloader"></script>
+
+
+ </head>
+ <body>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px">
+ <a href="genindex.html" title="General Index"
+ accesskey="I">index</a></li>
+ <li class="right" >
+ <a href="py-modindex.html" title="Python Module Index"
+ >modules</a> |</li>
+ <li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> &raquo;</li>
+ </ul>
+ </div>
+
+ <div class="document">
+ <div class="documentwrapper">
+ <div class="bodywrapper">
+ <div class="body">
+
+ <h1 id="search-documentation">Search</h1>
+ <div id="fallback" class="admonition warning">
+ <script type="text/javascript">$('#fallback').hide();</script>
+ <p>
+ Please activate JavaScript to enable the search
+ functionality.
+ </p>
+ </div>
+ <p>
+ From here you can search these documents. Enter your search
+ words into the box below and click "search". Note that the search
+ function will automatically search for all of the words. Pages
+ containing fewer words won't appear in the result list.
+ </p>
+ <form action="" method="get">
+ <input type="text" name="q" value="" />
+ <input type="submit" value="search" />
+ <span id="search-progress" style="padding-left: 10px"></span>
+ </form>
+
+ <div id="search-results">
+
+ </div>
+
+ </div>
+ </div>
+ </div>
+ <div class="sphinxsidebar">
+ <div class="sphinxsidebarwrapper">
+ </div>
+ </div>
+ <div class="clearer"></div>
+ </div>
+ <div class="related">
+ <h3>Navigation</h3>
+ <ul>
+ <li class="right" style="margin-right: 10px">
+ <a href="genindex.html" title="General Index"
+ >index</a></li>
+ <li class="right" >
+ <a href="py-modindex.html" title="Python Module Index"
+ >modules</a> |</li>
+ <li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> &raquo;</li>
+ </ul>
+ </div>
+
+ <div class="footer">
+ &copy; Copyright 2013, Centrum Wiskunde &amp; Informatica, Amsterdam.
+ Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
+ </div>
+<script>
+ (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
+ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
+ m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
+ })(window,document,'script','//www.google-analytics.com/analytics.js','ga');
+
+ ga('create', 'UA-40340335-1', 'dmpelt.github.io');
+ ga('send', 'pageview');
+
+</script>
+
+ </body>
+</html> \ No newline at end of file
diff --git a/python/docSRC/_build/html/searchindex.js b/python/docSRC/_build/html/searchindex.js
new file mode 100644
index 0000000..cc69a68
--- /dev/null
+++ b/python/docSRC/_build/html/searchindex.js
@@ -0,0 +1 @@
+Search.setIndex({objtypes:{"0":"py:module","1":"py:function","2":"py:method","3":"py:class"},objnames:{"0":["py","module","Python module"],"1":["py","function","Python function"],"2":["py","method","Python method"],"3":["py","class","Python 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\ No newline at end of file
diff --git a/python/docSRC/_templates/layout.html b/python/docSRC/_templates/layout.html
new file mode 100644
index 0000000..f30df11
--- /dev/null
+++ b/python/docSRC/_templates/layout.html
@@ -0,0 +1,15 @@
+{% extends "!layout.html" %}
+
+{% block footer %}
+{{ super() }}
+<script>
+ (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
+ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
+ m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
+ })(window,document,'script','//www.google-analytics.com/analytics.js','ga');
+
+ ga('create', 'UA-40340335-1', 'dmpelt.github.io');
+ ga('send', 'pageview');
+
+</script>
+{% endblock %}
diff --git a/python/docSRC/algorithm.rst b/python/docSRC/algorithm.rst
new file mode 100644
index 0000000..83752bd
--- /dev/null
+++ b/python/docSRC/algorithm.rst
@@ -0,0 +1,8 @@
+Algorithms: the :mod:`algorithm` module
+=======================================
+
+.. automodule:: astra.algorithm
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/astra.rst b/python/docSRC/astra.rst
new file mode 100644
index 0000000..5d5fdf0
--- /dev/null
+++ b/python/docSRC/astra.rst
@@ -0,0 +1,8 @@
+Additional ASTRA methods: the :mod:`astra` module
+========================================================
+
+.. automodule:: astra.astra
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/conf.py b/python/docSRC/conf.py
new file mode 100644
index 0000000..e54bbb8
--- /dev/null
+++ b/python/docSRC/conf.py
@@ -0,0 +1,287 @@
+# -*- coding: utf-8 -*-
+#
+# .. documentation build configuration file, created by
+# sphinx-quickstart on Wed Mar 13 16:36:32 2013.
+#
+# This file is execfile()d with the current directory set to its containing dir.
+#
+# Note that not all possible configuration values are present in this
+# autogenerated file.
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+import sys, os
+
+# If extensions (or modules to document with autodoc) are in another directory,
+# add these directories to sys.path here. If the directory is relative to the
+# documentation root, use os.path.abspath to make it absolute, like shown here.
+#sys.path.insert(0, os.path.abspath('.'))
+
+# -- General configuration -----------------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+#needs_sphinx = '1.0'
+
+# Add any Sphinx extension module names here, as strings. They can be extensions
+# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+extensions = ['sphinx.ext.autodoc', 'sphinx.ext.viewcode','sphinx.ext.mathjax','sphinx.ext.intersphinx']
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix of source filenames.
+source_suffix = '.rst'
+
+# The encoding of source files.
+#source_encoding = 'utf-8-sig'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = u'PyASTRAToolbox'
+copyright = u'2013, Centrum Wiskunde & Informatica, Amsterdam'
+
+# The version info for the project you're documenting, acts as replacement for
+# |version| and |release|, also used in various other places throughout the
+# built documents.
+#
+# The short X.Y version.
+version = '1.6'
+# The full version, including alpha/beta/rc tags.
+release = '1.6'
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#language = None
+
+# There are two options for replacing |today|: either, you set today to some
+# non-false value, then it is used:
+#today = ''
+# Else, today_fmt is used as the format for a strftime call.
+#today_fmt = '%B %d, %Y'
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+exclude_patterns = ['_build']
+
+# The reST default role (used for this markup: `text`) to use for all documents.
+#default_role = None
+
+# If true, '()' will be appended to :func: etc. cross-reference text.
+#add_function_parentheses = True
+
+# If true, the current module name will be prepended to all description
+# unit titles (such as .. function::).
+#add_module_names = True
+
+# If true, sectionauthor and moduleauthor directives will be shown in the
+# output. They are ignored by default.
+#show_authors = False
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+# A list of ignored prefixes for module index sorting.
+#modindex_common_prefix = []
+
+
+# -- Options for HTML output ---------------------------------------------------
+
+# The theme to use for HTML and HTML Help pages. See the documentation for
+# a list of builtin themes.
+html_theme = 'default'
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further. For a list of options available for each theme, see the
+# documentation.
+#html_theme_options = {}
+
+# Add any paths that contain custom themes here, relative to this directory.
+#html_theme_path = []
+
+# The name for this set of Sphinx documents. If None, it defaults to
+# "<project> v<release> documentation".
+#html_title = None
+
+# A shorter title for the navigation bar. Default is the same as html_title.
+#html_short_title = None
+
+# The name of an image file (relative to this directory) to place at the top
+# of the sidebar.
+#html_logo = None
+
+# The name of an image file (within the static path) to use as favicon of the
+# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
+# pixels large.
+#html_favicon = None
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['_static']
+
+# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
+# using the given strftime format.
+#html_last_updated_fmt = '%b %d, %Y'
+
+# If true, SmartyPants will be used to convert quotes and dashes to
+# typographically correct entities.
+#html_use_smartypants = True
+
+# Custom sidebar templates, maps document names to template names.
+#html_sidebars = {}
+
+# Additional templates that should be rendered to pages, maps page names to
+# template names.
+#html_additional_pages = {}
+
+# If false, no module index is generated.
+#html_domain_indices = True
+
+# If false, no index is generated.
+#html_use_index = True
+
+# If true, the index is split into individual pages for each letter.
+#html_split_index = False
+
+# If true, links to the reST sources are added to the pages.
+#html_show_sourcelink = True
+
+# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
+#html_show_sphinx = True
+
+# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
+#html_show_copyright = True
+
+# If true, an OpenSearch description file will be output, and all pages will
+# contain a <link> tag referring to it. The value of this option must be the
+# base URL from which the finished HTML is served.
+#html_use_opensearch = ''
+
+# This is the file name suffix for HTML files (e.g. ".xhtml").
+#html_file_suffix = None
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = 'doc'
+
+
+# -- Options for LaTeX output --------------------------------------------------
+
+latex_elements = {
+# The paper size ('letterpaper' or 'a4paper').
+#'papersize': 'letterpaper',
+
+# The font size ('10pt', '11pt' or '12pt').
+#'pointsize': '10pt',
+
+# Additional stuff for the LaTeX preamble.
+#'preamble': '',
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title, author, documentclass [howto/manual]).
+latex_documents = [
+ ('index', '.tex', u'.. Documentation',
+ u'Author', 'manual'),
+]
+
+# The name of an image file (relative to this directory) to place at the top of
+# the title page.
+#latex_logo = None
+
+# For "manual" documents, if this is true, then toplevel headings are parts,
+# not chapters.
+#latex_use_parts = False
+
+# If true, show page references after internal links.
+#latex_show_pagerefs = False
+
+# If true, show URL addresses after external links.
+#latex_show_urls = False
+
+# Documents to append as an appendix to all manuals.
+#latex_appendices = []
+
+# If false, no module index is generated.
+#latex_domain_indices = True
+
+
+# -- Options for manual page output --------------------------------------------
+
+# One entry per manual page. List of tuples
+# (source start file, name, description, authors, manual section).
+man_pages = [
+ ('index', '', u'.. Documentation',
+ [u'Author'], 1)
+]
+
+# If true, show URL addresses after external links.
+#man_show_urls = False
+
+
+# -- Options for Texinfo output ------------------------------------------------
+
+# Grouping the document tree into Texinfo files. List of tuples
+# (source start file, target name, title, author,
+# dir menu entry, description, category)
+texinfo_documents = [
+ ('index', '', u'.. Documentation',
+ u'Author', '', 'One line description of project.',
+ 'Miscellaneous'),
+]
+
+# Documents to append as an appendix to all manuals.
+#texinfo_appendices = []
+
+# If false, no module index is generated.
+#texinfo_domain_indices = True
+
+# How to display URL addresses: 'footnote', 'no', or 'inline'.
+#texinfo_show_urls = 'footnote'
+
+
+# -- Options for Epub output ---------------------------------------------------
+
+# Bibliographic Dublin Core info.
+epub_title = u'..'
+epub_author = u'Author'
+epub_publisher = u'Author'
+epub_copyright = u'2013, Author'
+
+# The language of the text. It defaults to the language option
+# or en if the language is not set.
+#epub_language = ''
+
+# The scheme of the identifier. Typical schemes are ISBN or URL.
+#epub_scheme = ''
+
+# The unique identifier of the text. This can be a ISBN number
+# or the project homepage.
+#epub_identifier = ''
+
+# A unique identification for the text.
+#epub_uid = ''
+
+# A tuple containing the cover image and cover page html template filenames.
+#epub_cover = ()
+
+# HTML files that should be inserted before the pages created by sphinx.
+# The format is a list of tuples containing the path and title.
+#epub_pre_files = []
+
+# HTML files shat should be inserted after the pages created by sphinx.
+# The format is a list of tuples containing the path and title.
+#epub_post_files = []
+
+# A list of files that should not be packed into the epub file.
+#epub_exclude_files = []
+
+# The depth of the table of contents in toc.ncx.
+#epub_tocdepth = 3
+
+# Allow duplicate toc entries.
+#epub_tocdup = True
+
+intersphinx_mapping = {'python': ('http://docs.python.org/2.7', None), 'numpy':('http://docs.scipy.org/doc/numpy/',None)}
diff --git a/python/docSRC/creators.rst b/python/docSRC/creators.rst
new file mode 100644
index 0000000..d6249c3
--- /dev/null
+++ b/python/docSRC/creators.rst
@@ -0,0 +1,8 @@
+Creation of objects: the :mod:`creators` module
+===============================================
+
+.. automodule:: astra.creators
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/data2d.rst b/python/docSRC/data2d.rst
new file mode 100644
index 0000000..342cbec
--- /dev/null
+++ b/python/docSRC/data2d.rst
@@ -0,0 +1,8 @@
+2D data objects: the :mod:`data2d` module
+=========================================
+
+.. automodule:: astra.data2d
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/data3d.rst b/python/docSRC/data3d.rst
new file mode 100644
index 0000000..5b7de23
--- /dev/null
+++ b/python/docSRC/data3d.rst
@@ -0,0 +1,8 @@
+3D data objects: the :mod:`data3d` module
+=========================================
+
+.. automodule:: astra.data3d
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/functions.rst b/python/docSRC/functions.rst
new file mode 100644
index 0000000..749eb27
--- /dev/null
+++ b/python/docSRC/functions.rst
@@ -0,0 +1,8 @@
+Additional functions: the :mod:`functions` module
+=================================================
+
+.. automodule:: astra.functions
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/index.rst b/python/docSRC/index.rst
new file mode 100644
index 0000000..8d17a4a
--- /dev/null
+++ b/python/docSRC/index.rst
@@ -0,0 +1,34 @@
+.. .. documentation master file, created by
+ sphinx-quickstart on Wed Mar 13 16:36:32 2013.
+ You can adapt this file completely to your liking, but it should at least
+ contain the root `toctree` directive.
+
+Welcome to PyASTRAToolbox's documentation!
+==========================================
+
+Contents:
+
+.. toctree::
+ :maxdepth: 4
+
+ data2d
+ data3d
+ projector
+ algorithm
+ matrix
+ creators
+ functions
+ ASTRAProjector
+ matlab
+ astra
+.. astra
+.. builder
+
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`
+
diff --git a/python/docSRC/make.bat b/python/docSRC/make.bat
new file mode 100644
index 0000000..d70c604
--- /dev/null
+++ b/python/docSRC/make.bat
@@ -0,0 +1,190 @@
+@ECHO OFF
+
+REM Command file for Sphinx documentation
+
+if "%SPHINXBUILD%" == "" (
+ set SPHINXBUILD=sphinx-build
+)
+set BUILDDIR=_build
+set ALLSPHINXOPTS=-d %BUILDDIR%/doctrees %SPHINXOPTS% .
+set I18NSPHINXOPTS=%SPHINXOPTS% .
+if NOT "%PAPER%" == "" (
+ set ALLSPHINXOPTS=-D latex_paper_size=%PAPER% %ALLSPHINXOPTS%
+ set I18NSPHINXOPTS=-D latex_paper_size=%PAPER% %I18NSPHINXOPTS%
+)
+
+if "%1" == "" goto help
+
+if "%1" == "help" (
+ :help
+ echo.Please use `make ^<target^>` where ^<target^> is one of
+ echo. html to make standalone HTML files
+ echo. dirhtml to make HTML files named index.html in directories
+ echo. singlehtml to make a single large HTML file
+ echo. pickle to make pickle files
+ echo. json to make JSON files
+ echo. htmlhelp to make HTML files and a HTML help project
+ echo. qthelp to make HTML files and a qthelp project
+ echo. devhelp to make HTML files and a Devhelp project
+ echo. epub to make an epub
+ echo. latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter
+ echo. text to make text files
+ echo. man to make manual pages
+ echo. texinfo to make Texinfo files
+ echo. gettext to make PO message catalogs
+ echo. changes to make an overview over all changed/added/deprecated items
+ echo. linkcheck to check all external links for integrity
+ echo. doctest to run all doctests embedded in the documentation if enabled
+ goto end
+)
+
+if "%1" == "clean" (
+ for /d %%i in (%BUILDDIR%\*) do rmdir /q /s %%i
+ del /q /s %BUILDDIR%\*
+ goto end
+)
+
+if "%1" == "html" (
+ %SPHINXBUILD% -b html %ALLSPHINXOPTS% %BUILDDIR%/html
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The HTML pages are in %BUILDDIR%/html.
+ goto end
+)
+
+if "%1" == "dirhtml" (
+ %SPHINXBUILD% -b dirhtml %ALLSPHINXOPTS% %BUILDDIR%/dirhtml
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The HTML pages are in %BUILDDIR%/dirhtml.
+ goto end
+)
+
+if "%1" == "singlehtml" (
+ %SPHINXBUILD% -b singlehtml %ALLSPHINXOPTS% %BUILDDIR%/singlehtml
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The HTML pages are in %BUILDDIR%/singlehtml.
+ goto end
+)
+
+if "%1" == "pickle" (
+ %SPHINXBUILD% -b pickle %ALLSPHINXOPTS% %BUILDDIR%/pickle
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished; now you can process the pickle files.
+ goto end
+)
+
+if "%1" == "json" (
+ %SPHINXBUILD% -b json %ALLSPHINXOPTS% %BUILDDIR%/json
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished; now you can process the JSON files.
+ goto end
+)
+
+if "%1" == "htmlhelp" (
+ %SPHINXBUILD% -b htmlhelp %ALLSPHINXOPTS% %BUILDDIR%/htmlhelp
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished; now you can run HTML Help Workshop with the ^
+.hhp project file in %BUILDDIR%/htmlhelp.
+ goto end
+)
+
+if "%1" == "qthelp" (
+ %SPHINXBUILD% -b qthelp %ALLSPHINXOPTS% %BUILDDIR%/qthelp
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished; now you can run "qcollectiongenerator" with the ^
+.qhcp project file in %BUILDDIR%/qthelp, like this:
+ echo.^> qcollectiongenerator %BUILDDIR%\qthelp\.qhcp
+ echo.To view the help file:
+ echo.^> assistant -collectionFile %BUILDDIR%\qthelp\.ghc
+ goto end
+)
+
+if "%1" == "devhelp" (
+ %SPHINXBUILD% -b devhelp %ALLSPHINXOPTS% %BUILDDIR%/devhelp
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished.
+ goto end
+)
+
+if "%1" == "epub" (
+ %SPHINXBUILD% -b epub %ALLSPHINXOPTS% %BUILDDIR%/epub
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The epub file is in %BUILDDIR%/epub.
+ goto end
+)
+
+if "%1" == "latex" (
+ %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished; the LaTeX files are in %BUILDDIR%/latex.
+ goto end
+)
+
+if "%1" == "text" (
+ %SPHINXBUILD% -b text %ALLSPHINXOPTS% %BUILDDIR%/text
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The text files are in %BUILDDIR%/text.
+ goto end
+)
+
+if "%1" == "man" (
+ %SPHINXBUILD% -b man %ALLSPHINXOPTS% %BUILDDIR%/man
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The manual pages are in %BUILDDIR%/man.
+ goto end
+)
+
+if "%1" == "texinfo" (
+ %SPHINXBUILD% -b texinfo %ALLSPHINXOPTS% %BUILDDIR%/texinfo
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The Texinfo files are in %BUILDDIR%/texinfo.
+ goto end
+)
+
+if "%1" == "gettext" (
+ %SPHINXBUILD% -b gettext %I18NSPHINXOPTS% %BUILDDIR%/locale
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Build finished. The message catalogs are in %BUILDDIR%/locale.
+ goto end
+)
+
+if "%1" == "changes" (
+ %SPHINXBUILD% -b changes %ALLSPHINXOPTS% %BUILDDIR%/changes
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.The overview file is in %BUILDDIR%/changes.
+ goto end
+)
+
+if "%1" == "linkcheck" (
+ %SPHINXBUILD% -b linkcheck %ALLSPHINXOPTS% %BUILDDIR%/linkcheck
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Link check complete; look for any errors in the above output ^
+or in %BUILDDIR%/linkcheck/output.txt.
+ goto end
+)
+
+if "%1" == "doctest" (
+ %SPHINXBUILD% -b doctest %ALLSPHINXOPTS% %BUILDDIR%/doctest
+ if errorlevel 1 exit /b 1
+ echo.
+ echo.Testing of doctests in the sources finished, look at the ^
+results in %BUILDDIR%/doctest/output.txt.
+ goto end
+)
+
+:end
diff --git a/python/docSRC/matlab.rst b/python/docSRC/matlab.rst
new file mode 100644
index 0000000..fb7033e
--- /dev/null
+++ b/python/docSRC/matlab.rst
@@ -0,0 +1,8 @@
+MATLAB compatibility interface: the :mod:`matlab` module
+========================================================
+
+.. automodule:: astra.matlab
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/matrix.rst b/python/docSRC/matrix.rst
new file mode 100644
index 0000000..6f11d8a
--- /dev/null
+++ b/python/docSRC/matrix.rst
@@ -0,0 +1,8 @@
+Sparse matrices: the :mod:`matrix` module
+=========================================
+
+.. automodule:: astra.matrix
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/python/docSRC/projector.rst b/python/docSRC/projector.rst
new file mode 100644
index 0000000..b0854e8
--- /dev/null
+++ b/python/docSRC/projector.rst
@@ -0,0 +1,8 @@
+Projector object: the :mod:`projector` module
+=============================================
+
+.. automodule:: astra.projector
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
diff --git a/samples/s001_sinogram_par2d.m b/samples/matlab/s001_sinogram_par2d.m
index 4494e7b..4494e7b 100644
--- a/samples/s001_sinogram_par2d.m
+++ b/samples/matlab/s001_sinogram_par2d.m
diff --git a/samples/s002_data2d.m b/samples/matlab/s002_data2d.m
index a91071f..a91071f 100644
--- a/samples/s002_data2d.m
+++ b/samples/matlab/s002_data2d.m
diff --git a/samples/s003_gpu_reconstruction.m b/samples/matlab/s003_gpu_reconstruction.m
index efb5c68..efb5c68 100644
--- a/samples/s003_gpu_reconstruction.m
+++ b/samples/matlab/s003_gpu_reconstruction.m
diff --git a/samples/s004_cpu_reconstruction.m b/samples/matlab/s004_cpu_reconstruction.m
index f25cd2b..f25cd2b 100644
--- a/samples/s004_cpu_reconstruction.m
+++ b/samples/matlab/s004_cpu_reconstruction.m
diff --git a/samples/s005_3d_geometry.m b/samples/matlab/s005_3d_geometry.m
index 4b7360b..4b7360b 100644
--- a/samples/s005_3d_geometry.m
+++ b/samples/matlab/s005_3d_geometry.m
diff --git a/samples/s006_3d_data.m b/samples/matlab/s006_3d_data.m
index 32d88cc..32d88cc 100644
--- a/samples/s006_3d_data.m
+++ b/samples/matlab/s006_3d_data.m
diff --git a/samples/s007_3d_reconstruction.m b/samples/matlab/s007_3d_reconstruction.m
index fc9aca6..fc9aca6 100644
--- a/samples/s007_3d_reconstruction.m
+++ b/samples/matlab/s007_3d_reconstruction.m
diff --git a/samples/s008_gpu_selection.m b/samples/matlab/s008_gpu_selection.m
index a9e152d..a9e152d 100644
--- a/samples/s008_gpu_selection.m
+++ b/samples/matlab/s008_gpu_selection.m
diff --git a/samples/s009_projection_matrix.m b/samples/matlab/s009_projection_matrix.m
index efda0d2..efda0d2 100644
--- a/samples/s009_projection_matrix.m
+++ b/samples/matlab/s009_projection_matrix.m
diff --git a/samples/s010_supersampling.m b/samples/matlab/s010_supersampling.m
index 80f6f56..80f6f56 100644
--- a/samples/s010_supersampling.m
+++ b/samples/matlab/s010_supersampling.m
diff --git a/samples/s011_object_info.m b/samples/matlab/s011_object_info.m
index 61ecb83..61ecb83 100644
--- a/samples/s011_object_info.m
+++ b/samples/matlab/s011_object_info.m
diff --git a/samples/s012_masks.m b/samples/matlab/s012_masks.m
index d3611a6..d3611a6 100644
--- a/samples/s012_masks.m
+++ b/samples/matlab/s012_masks.m
diff --git a/samples/s013_constraints.m b/samples/matlab/s013_constraints.m
index d72195c..d72195c 100644
--- a/samples/s013_constraints.m
+++ b/samples/matlab/s013_constraints.m
diff --git a/samples/s014_FBP.m b/samples/matlab/s014_FBP.m
index b73149c..b73149c 100644
--- a/samples/s014_FBP.m
+++ b/samples/matlab/s014_FBP.m
diff --git a/samples/s015_fp_bp.m b/samples/matlab/s015_fp_bp.m
index 8cc417e..8cc417e 100644
--- a/samples/s015_fp_bp.m
+++ b/samples/matlab/s015_fp_bp.m
diff --git a/samples/s016_plots.m b/samples/matlab/s016_plots.m
index 1455c6d..1455c6d 100644
--- a/samples/s016_plots.m
+++ b/samples/matlab/s016_plots.m
diff --git a/samples/python/phantom.mat b/samples/python/phantom.mat
new file mode 100644
index 0000000..c465bbe
--- /dev/null
+++ b/samples/python/phantom.mat
Binary files differ
diff --git a/samples/python/s001_sinogram_par2d.py b/samples/python/s001_sinogram_par2d.py
new file mode 100644
index 0000000..1d1b912
--- /dev/null
+++ b/samples/python/s001_sinogram_par2d.py
@@ -0,0 +1,60 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import astra
+import numpy as np
+
+# Create a basic 256x256 square volume geometry
+vol_geom = astra.create_vol_geom(256, 256)
+
+# Create a parallel beam geometry with 180 angles between 0 and pi, and
+# 384 detector pixels of width 1.
+# For more details on available geometries, see the online help of the
+# function astra_create_proj_geom .
+proj_geom = astra.create_proj_geom('parallel', 1.0, 384, np.linspace(0,np.pi,180,False))
+
+# Load a 256x256 phantom image
+import scipy.io
+P = scipy.io.loadmat('phantom.mat')['phantom256']
+
+# Create a sinogram using the GPU.
+# Note that the first time the GPU is accessed, there may be a delay
+# of up to 10 seconds for initialization.
+proj_id = astra.create_projector('cuda',proj_geom,vol_geom)
+sinogram_id, sinogram = astra.create_sino(P, proj_id)
+
+import pylab
+pylab.gray()
+pylab.figure(1)
+pylab.imshow(P)
+pylab.figure(2)
+pylab.imshow(sinogram)
+pylab.show()
+
+
+# Free memory
+astra.data2d.delete(sinogram_id)
+astra.projector.delete(proj_id)
diff --git a/samples/python/s002_data2d.py b/samples/python/s002_data2d.py
new file mode 100644
index 0000000..35fb91f
--- /dev/null
+++ b/samples/python/s002_data2d.py
@@ -0,0 +1,77 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import astra
+import numpy as np
+
+vol_geom = astra.create_vol_geom(256, 256)
+
+proj_geom = astra.create_proj_geom('parallel', 1.0, 384, np.linspace(0,np.pi,180,False))
+
+
+# Create volumes
+
+# initialized to zero
+v0 = astra.data2d.create('-vol', vol_geom)
+
+# initialized to 3.0
+v1 = astra.data2d.create('-vol', vol_geom, 3.0)
+
+# initialized to a matrix. A may be a single, double or logical (0/1) array.
+import scipy.io
+A = scipy.io.loadmat('phantom.mat')['phantom256']
+v2 = astra.data2d.create('-vol', vol_geom, A)
+
+
+# Projection data
+s0 = astra.data2d.create('-sino', proj_geom)
+# Initialization to a scalar or a matrix also works, exactly as with a volume.
+
+
+# Update data
+
+# set to zero
+astra.data2d.store(v0, 0)
+
+# set to a matrix
+astra.data2d.store(v2, A)
+
+
+
+# Retrieve data
+
+R = astra.data2d.get(v2)
+import pylab
+pylab.gray()
+pylab.imshow(R)
+pylab.show()
+
+
+# Free memory
+astra.data2d.delete(v0)
+astra.data2d.delete(v1)
+astra.data2d.delete(v2)
+astra.data2d.delete(s0)
diff --git a/samples/python/s003_gpu_reconstruction.py b/samples/python/s003_gpu_reconstruction.py
new file mode 100644
index 0000000..07b38ef
--- /dev/null
+++ b/samples/python/s003_gpu_reconstruction.py
@@ -0,0 +1,75 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import astra
+import numpy as np
+
+vol_geom = astra.create_vol_geom(256, 256)
+proj_geom = astra.create_proj_geom('parallel', 1.0, 384, np.linspace(0,np.pi,180,False))
+
+# As before, create a sinogram from a phantom
+import scipy.io
+P = scipy.io.loadmat('phantom.mat')['phantom256']
+proj_id = astra.create_projector('cuda',proj_geom,vol_geom)
+sinogram_id, sinogram = astra.create_sino(P, proj_id)
+
+import pylab
+pylab.gray()
+pylab.figure(1)
+pylab.imshow(P)
+pylab.figure(2)
+pylab.imshow(sinogram)
+
+# Create a data object for the reconstruction
+rec_id = astra.data2d.create('-vol', vol_geom)
+
+# Set up the parameters for a reconstruction algorithm using the GPU
+cfg = astra.astra_dict('SIRT_CUDA')
+cfg['ReconstructionDataId'] = rec_id
+cfg['ProjectionDataId'] = sinogram_id
+
+# Available algorithms:
+# SIRT_CUDA, SART_CUDA, EM_CUDA, FBP_CUDA (see the FBP sample)
+
+
+# Create the algorithm object from the configuration structure
+alg_id = astra.algorithm.create(cfg)
+
+# Run 150 iterations of the algorithm
+astra.algorithm.run(alg_id, 150)
+
+# Get the result
+rec = astra.data2d.get(rec_id)
+pylab.figure(3)
+pylab.imshow(rec)
+pylab.show()
+
+# Clean up. Note that GPU memory is tied up in the algorithm object,
+# and main RAM in the data objects.
+astra.algorithm.delete(alg_id)
+astra.data2d.delete(rec_id)
+astra.data2d.delete(sinogram_id)
+astra.projector.delete(proj_id)
diff --git a/samples/python/s004_cpu_reconstruction.py b/samples/python/s004_cpu_reconstruction.py
new file mode 100644
index 0000000..8385cf8
--- /dev/null
+++ b/samples/python/s004_cpu_reconstruction.py
@@ -0,0 +1,81 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import astra
+import numpy as np
+
+vol_geom = astra.create_vol_geom(256, 256)
+proj_geom = astra.create_proj_geom('parallel', 1.0, 384, np.linspace(0,np.pi,180,False))
+
+# For CPU-based algorithms, a "projector" object specifies the projection
+# model used. In this case, we use the "strip" model.
+proj_id = astra.create_projector('strip', proj_geom, vol_geom)
+
+# Create a sinogram from a phantom
+import scipy.io
+P = scipy.io.loadmat('phantom.mat')['phantom256']
+sinogram_id, sinogram = astra.create_sino(P, proj_id)
+
+import pylab
+pylab.gray()
+pylab.figure(1)
+pylab.imshow(P)
+pylab.figure(2)
+pylab.imshow(sinogram)
+
+# Create a data object for the reconstruction
+rec_id = astra.data2d.create('-vol', vol_geom)
+
+# Set up the parameters for a reconstruction algorithm using the CPU
+# The main difference with the configuration of a GPU algorithm is the
+# extra ProjectorId setting.
+cfg = astra.astra_dict('SIRT')
+cfg['ReconstructionDataId'] = rec_id
+cfg['ProjectionDataId'] = sinogram_id
+cfg['ProjectorId'] = proj_id
+
+# Available algorithms:
+# ART, SART, SIRT, CGLS, FBP
+
+
+# Create the algorithm object from the configuration structure
+alg_id = astra.algorithm.create(cfg)
+
+# Run 20 iterations of the algorithm
+# This will have a runtime in the order of 10 seconds.
+astra.algorithm.run(alg_id, 20)
+
+# Get the result
+rec = astra.data2d.get(rec_id)
+pylab.figure(3)
+pylab.imshow(rec)
+pylab.show()
+
+# Clean up.
+astra.algorithm.delete(alg_id)
+astra.data2d.delete(rec_id)
+astra.data2d.delete(sinogram_id)
+astra.projector.delete(proj_id)
diff --git a/samples/python/s005_3d_geometry.py b/samples/python/s005_3d_geometry.py
new file mode 100644
index 0000000..f43fc7e
--- /dev/null
+++ b/samples/python/s005_3d_geometry.py
@@ -0,0 +1,114 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+from six.moves import range
+import astra
+import numpy as np
+
+vol_geom = astra.create_vol_geom(64, 64, 64)
+
+
+# There are two main 3d projection geometry types: cone beam and parallel beam.
+# Each has a regular variant, and a 'vec' variant.
+# The 'vec' variants are completely free in the placement of source/detector,
+# while the regular variants assume circular trajectories around the z-axis.
+
+
+# -------------
+# Parallel beam
+# -------------
+
+
+# Circular
+
+# Parameters: width of detector column, height of detector row, #rows, #columns
+angles = np.linspace(0, 2*np.pi, 48, False)
+proj_geom = astra.create_proj_geom('parallel3d', 1.0, 1.0, 32, 64, angles)
+
+
+# Free
+
+# We generate the same geometry as the circular one above.
+vectors = np.zeros((len(angles), 12))
+for i in range(len(angles)):
+ # ray direction
+ vectors[i,0] = np.sin(angles[i])
+ vectors[i,1] = -np.cos(angles[i])
+ vectors[i,2] = 0
+
+ # center of detector
+ vectors[i,3:6] = 0
+
+ # vector from detector pixel (0,0) to (0,1)
+ vectors[i,6] = np.cos(angles[i])
+ vectors[i,7] = np.sin(angles[i])
+ vectors[i,8] = 0;
+
+ # vector from detector pixel (0,0) to (1,0)
+ vectors[i,9] = 0
+ vectors[i,10] = 0
+ vectors[i,11] = 1
+
+# Parameters: #rows, #columns, vectors
+proj_geom = astra.create_proj_geom('parallel3d_vec', 32, 64, vectors)
+
+# ----------
+# Cone beam
+# ----------
+
+
+# Circular
+
+# Parameters: width of detector column, height of detector row, #rows, #columns,
+# angles, distance source-origin, distance origin-detector
+angles = np.linspace(0, 2*np.pi, 48, False)
+proj_geom = astra.create_proj_geom('cone', 1.0, 1.0, 32, 64, angles, 1000, 0)
+
+# Free
+
+vectors = np.zeros((len(angles), 12))
+for i in range(len(angles)):
+ # source
+ vectors[i,0] = np.sin(angles[i]) * 1000
+ vectors[i,1] = -np.cos(angles[i]) * 1000
+ vectors[i,2] = 0
+
+ # center of detector
+ vectors[i,3:6] = 0
+
+ # vector from detector pixel (0,0) to (0,1)
+ vectors[i,6] = np.cos(angles[i])
+ vectors[i,7] = np.sin(angles[i])
+ vectors[i,8] = 0
+
+ # vector from detector pixel (0,0) to (1,0)
+ vectors[i,9] = 0
+ vectors[i,10] = 0
+ vectors[i,11] = 1
+
+# Parameters: #rows, #columns, vectors
+proj_geom = astra.create_proj_geom('cone_vec', 32, 64, vectors)
+
diff --git a/samples/python/s006_3d_data.py b/samples/python/s006_3d_data.py
new file mode 100644
index 0000000..5178179
--- /dev/null
+++ b/samples/python/s006_3d_data.py
@@ -0,0 +1,76 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import astra
+import numpy as np
+
+# Create a 3D volume geometry.
+# Parameter order: rows, colums, slices (y, x, z)
+vol_geom = astra.create_vol_geom(64, 48, 32)
+
+
+# Create volumes
+
+# initialized to zero
+v0 = astra.data3d.create('-vol', vol_geom)
+
+# initialized to 3.0
+v1 = astra.data3d.create('-vol', vol_geom, 3.0)
+
+# initialized to a matrix. A may be a single or double array.
+# Coordinate order: slice, row, column (z, y, x)
+A = np.zeros((32, 64, 48))
+v2 = astra.data3d.create('-vol', vol_geom, A)
+
+
+# Projection data
+
+# 2 projection directions, along x and y axis resp.
+V = np.array([[ 1,0,0, 0,0,0, 0,1,0, 0,0,1],
+ [0,1,0, 0,0,0, -1,0,0, 0,0,1]],dtype=np.float)
+# 32 rows (v), 64 columns (u)
+proj_geom = astra.create_proj_geom('parallel3d_vec', 32, 64, V)
+
+s0 = astra.data3d.create('-proj3d', proj_geom)
+
+# Initialization to a scalar or zero works exactly as with a volume.
+
+# Initialized to a matrix:
+# Coordinate order: row (v), angle, column (u)
+A = np.zeros((32, 2, 64))
+s1 = astra.data3d.create('-proj3d', proj_geom, A)
+
+
+# Retrieve data:
+R = astra.data3d.get(v1)
+
+
+# Delete all created data objects
+astra.data3d.delete(v0)
+astra.data3d.delete(v1)
+astra.data3d.delete(v2)
+astra.data3d.delete(s0)
+astra.data3d.delete(s1)
diff --git a/samples/python/s007_3d_reconstruction.py b/samples/python/s007_3d_reconstruction.py
new file mode 100644
index 0000000..40e9556
--- /dev/null
+++ b/samples/python/s007_3d_reconstruction.py
@@ -0,0 +1,77 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import astra
+import numpy as np
+
+vol_geom = astra.create_vol_geom(128, 128, 128)
+
+angles = np.linspace(0, np.pi, 180,False)
+proj_geom = astra.create_proj_geom('parallel3d', 1.0, 1.0, 128, 192, angles)
+
+# Create a simple hollow cube phantom
+cube = np.zeros((128,128,128))
+cube[17:113,17:113,17:113] = 1
+cube[33:97,33:97,33:97] = 0
+
+# Create projection data from this
+proj_id, proj_data = astra.create_sino3d_gpu(cube, proj_geom, vol_geom)
+
+# Display a single projection image
+import pylab
+pylab.gray()
+pylab.figure(1)
+pylab.imshow(proj_data[:,20,:])
+
+# Create a data object for the reconstruction
+rec_id = astra.data3d.create('-vol', vol_geom)
+
+# Set up the parameters for a reconstruction algorithm using the GPU
+cfg = astra.astra_dict('SIRT3D_CUDA')
+cfg['ReconstructionDataId'] = rec_id
+cfg['ProjectionDataId'] = proj_id
+
+
+# Create the algorithm object from the configuration structure
+alg_id = astra.algorithm.create(cfg)
+
+# Run 150 iterations of the algorithm
+# Note that this requires about 750MB of GPU memory, and has a runtime
+# in the order of 10 seconds.
+astra.algorithm.run(alg_id, 150)
+
+# Get the result
+rec = astra.data3d.get(rec_id)
+pylab.figure(2)
+pylab.imshow(rec[:,:,65])
+pylab.show()
+
+
+# Clean up. Note that GPU memory is tied up in the algorithm object,
+# and main RAM in the data objects.
+astra.algorithm.delete(alg_id)
+astra.data3d.delete(rec_id)
+astra.data3d.delete(proj_id)
diff --git a/samples/python/s008_gpu_selection.py b/samples/python/s008_gpu_selection.py
new file mode 100644
index 0000000..a180802
--- /dev/null
+++ b/samples/python/s008_gpu_selection.py
@@ -0,0 +1,61 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import astra
+import numpy as np
+
+vol_geom = astra.create_vol_geom(256, 256)
+proj_geom = astra.create_proj_geom('parallel', 1.0, 384, np.linspace(0,np.pi,180,False))
+import scipy.io
+P = scipy.io.loadmat('phantom.mat')['phantom256']
+
+proj_id = astra.create_projector('cuda',proj_geom,vol_geom)
+
+# Create a sinogram from a phantom, using GPU #1. (The default is #0)
+sinogram_id, sinogram = astra.create_sino(P, proj_id, gpuIndex=1)
+
+
+# Set up the parameters for a reconstruction algorithm using the GPU
+rec_id = astra.data2d.create('-vol', vol_geom)
+cfg = astra.astra_dict('SIRT_CUDA')
+cfg['ReconstructionDataId'] = rec_id
+cfg['ProjectionDataId'] = sinogram_id
+
+# Use GPU #1 for the reconstruction. (The default is #0.)
+cfg['option'] = {}
+cfg['option']['GPUindex'] = 1
+
+# Run 150 iterations of the algorithm
+alg_id = astra.algorithm.create(cfg)
+astra.algorithm.run(alg_id, 150)
+rec = astra.data2d.get(rec_id)
+
+
+# Clean up.
+astra.algorithm.delete(alg_id)
+astra.data2d.delete(rec_id)
+astra.data2d.delete(sinogram_id)
+astra.projector.delete(proj_id)
diff --git a/samples/python/s009_projection_matrix.py b/samples/python/s009_projection_matrix.py
new file mode 100644
index 0000000..c4c4557
--- /dev/null
+++ b/samples/python/s009_projection_matrix.py
@@ -0,0 +1,65 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import astra
+import numpy as np
+
+vol_geom = astra.create_vol_geom(256, 256)
+proj_geom = astra.create_proj_geom('parallel', 1.0, 384, np.linspace(0,np.pi,180,False))
+
+# For CPU-based algorithms, a "projector" object specifies the projection
+# model used. In this case, we use the "line" model.
+proj_id = astra.create_projector('line', proj_geom, vol_geom)
+
+# Generate the projection matrix for this projection model.
+# This creates a matrix W where entry w_{i,j} corresponds to the
+# contribution of volume element j to detector element i.
+matrix_id = astra.projector.matrix(proj_id)
+
+# Get the projection matrix as a Scipy sparse matrix.
+W = astra.matrix.get(matrix_id)
+
+
+# Manually use this projection matrix to do a projection:
+import scipy.io
+P = scipy.io.loadmat('phantom.mat')['phantom256']
+s = W.dot(P.flatten())
+s = np.reshape(s, (len(proj_geom['ProjectionAngles']),proj_geom['DetectorCount']))
+
+import pylab
+pylab.gray()
+pylab.figure(1)
+pylab.imshow(s)
+pylab.show()
+
+# Each row of the projection matrix corresponds to a detector element.
+# Detector t for angle p is for row 1 + t + p*proj_geom.DetectorCount.
+# Each column corresponds to a volume pixel.
+# Pixel (x,y) corresponds to column 1 + x + y*vol_geom.GridColCount.
+
+
+astra.projector.delete(proj_id)
+astra.matrix.delete(matrix_id)
diff --git a/samples/python/s010_supersampling.py b/samples/python/s010_supersampling.py
new file mode 100644
index 0000000..1a337bc
--- /dev/null
+++ b/samples/python/s010_supersampling.py
@@ -0,0 +1,85 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import astra
+import numpy as np
+
+vol_geom = astra.create_vol_geom(256, 256)
+proj_geom = astra.create_proj_geom('parallel', 3.0, 128, np.linspace(0,np.pi,180,False))
+import scipy.io
+P = scipy.io.loadmat('phantom.mat')['phantom256']
+
+# Because the astra.create_sino method does not have support for
+# all possible algorithm options, we manually create a sinogram
+phantom_id = astra.data2d.create('-vol', vol_geom, P)
+sinogram_id = astra.data2d.create('-sino', proj_geom)
+cfg = astra.astra_dict('FP_CUDA')
+cfg['VolumeDataId'] = phantom_id
+cfg['ProjectionDataId'] = sinogram_id
+
+# Set up 3 rays per detector element
+cfg['option'] = {}
+cfg['option']['DetectorSuperSampling'] = 3
+
+alg_id = astra.algorithm.create(cfg)
+astra.algorithm.run(alg_id)
+astra.algorithm.delete(alg_id)
+astra.data2d.delete(phantom_id)
+
+sinogram3 = astra.data2d.get(sinogram_id)
+
+import pylab
+pylab.gray()
+pylab.figure(1)
+pylab.imshow(P)
+pylab.figure(2)
+pylab.imshow(sinogram3)
+
+# Create a reconstruction, also using supersampling
+rec_id = astra.data2d.create('-vol', vol_geom)
+cfg = astra.astra_dict('SIRT_CUDA')
+cfg['ReconstructionDataId'] = rec_id
+cfg['ProjectionDataId'] = sinogram_id
+# Set up 3 rays per detector element
+cfg['option'] = {}
+cfg['option']['DetectorSuperSampling'] = 3
+
+# There is also an option for supersampling during the backprojection step.
+# This should be used if your detector pixels are smaller than the voxels.
+
+# Set up 2 rays per image pixel dimension, for 4 rays total per image pixel.
+# cfg['option']['PixelSuperSampling'] = 2
+
+
+alg_id = astra.algorithm.create(cfg)
+astra.algorithm.run(alg_id, 150)
+astra.algorithm.delete(alg_id)
+
+rec = astra.data2d.get(rec_id)
+pylab.figure(3)
+pylab.imshow(rec)
+pylab.show()
+
diff --git a/samples/python/s011_object_info.py b/samples/python/s011_object_info.py
new file mode 100644
index 0000000..02f387a
--- /dev/null
+++ b/samples/python/s011_object_info.py
@@ -0,0 +1,54 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import astra
+
+# Create two volume geometries
+vol_geom1 = astra.create_vol_geom(256, 256)
+vol_geom2 = astra.create_vol_geom(512, 256)
+
+# Create volumes
+v0 = astra.data2d.create('-vol', vol_geom1)
+v1 = astra.data2d.create('-vol', vol_geom2)
+v2 = astra.data2d.create('-vol', vol_geom2)
+
+# Show the currently allocated volumes
+astra.data2d.info()
+
+
+astra.data2d.delete(v2)
+astra.data2d.info()
+
+astra.data2d.clear()
+astra.data2d.info()
+
+
+
+# The same clear and info command also work for other object types:
+astra.algorithm.info()
+astra.data3d.info()
+astra.projector.info()
+astra.matrix.info()
diff --git a/samples/python/s012_masks.py b/samples/python/s012_masks.py
new file mode 100644
index 0000000..0f667b0
--- /dev/null
+++ b/samples/python/s012_masks.py
@@ -0,0 +1,92 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+
+import astra
+import numpy as np
+
+# In this example we will create a reconstruction in a circular region,
+# instead of the usual rectangle.
+
+# This is done by placing a circular mask on the square reconstruction volume:
+
+c = np.linspace(-127.5,127.5,256)
+x, y = np.meshgrid(c,c)
+mask = np.array((x**2 + y**2 < 127.5**2),dtype=np.float)
+
+import pylab
+pylab.gray()
+pylab.figure(1)
+pylab.imshow(mask)
+
+vol_geom = astra.create_vol_geom(256, 256)
+proj_geom = astra.create_proj_geom('parallel', 1.0, 384, np.linspace(0,np.pi,50,False))
+
+# As before, create a sinogram from a phantom
+import scipy.io
+P = scipy.io.loadmat('phantom.mat')['phantom256']
+proj_id = astra.create_projector('cuda',proj_geom,vol_geom)
+sinogram_id, sinogram = astra.create_sino(P, proj_id)
+
+pylab.figure(2)
+pylab.imshow(P)
+pylab.figure(3)
+pylab.imshow(sinogram)
+
+# Create a data object for the reconstruction
+rec_id = astra.data2d.create('-vol', vol_geom)
+
+# Create a data object for the mask
+mask_id = astra.data2d.create('-vol', vol_geom, mask)
+
+# Set up the parameters for a reconstruction algorithm using the GPU
+cfg = astra.astra_dict('SIRT_CUDA')
+cfg['ReconstructionDataId'] = rec_id
+cfg['ProjectionDataId'] = sinogram_id
+cfg['option'] = {}
+cfg['option']['ReconstructionMaskId'] = mask_id
+
+# Create the algorithm object from the configuration structure
+alg_id = astra.algorithm.create(cfg)
+
+# Run 150 iterations of the algorithm
+astra.algorithm.run(alg_id, 150)
+
+# Get the result
+rec = astra.data2d.get(rec_id)
+
+pylab.figure(4)
+pylab.imshow(rec)
+
+pylab.show()
+
+# Clean up. Note that GPU memory is tied up in the algorithm object,
+# and main RAM in the data objects.
+astra.algorithm.delete(alg_id)
+astra.data2d.delete(mask_id)
+astra.data2d.delete(rec_id)
+astra.data2d.delete(sinogram_id)
+astra.projector.delete(proj_id)
diff --git a/samples/python/s013_constraints.py b/samples/python/s013_constraints.py
new file mode 100644
index 0000000..8b63d5e
--- /dev/null
+++ b/samples/python/s013_constraints.py
@@ -0,0 +1,77 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import astra
+import numpy as np
+
+# In this example we will create a reconstruction constrained to
+# greyvalues between 0 and 1
+
+vol_geom = astra.create_vol_geom(256, 256)
+proj_geom = astra.create_proj_geom('parallel', 1.0, 384, np.linspace(0,np.pi,50,False))
+
+# As before, create a sinogram from a phantom
+import scipy.io
+P = scipy.io.loadmat('phantom.mat')['phantom256']
+proj_id = astra.create_projector('cuda',proj_geom,vol_geom)
+sinogram_id, sinogram = astra.create_sino(P, proj_id)
+
+import pylab
+pylab.gray()
+pylab.figure(1)
+pylab.imshow(P)
+pylab.figure(2)
+pylab.imshow(sinogram)
+
+# Create a data object for the reconstruction
+rec_id = astra.data2d.create('-vol', vol_geom)
+
+# Set up the parameters for a reconstruction algorithm using the GPU
+cfg = astra.astra_dict('SIRT_CUDA')
+cfg['ReconstructionDataId'] = rec_id
+cfg['ProjectionDataId'] = sinogram_id
+cfg['option']={}
+cfg['option']['MinConstraint'] = 0
+cfg['option']['MaxConstraint'] = 1
+
+# Create the algorithm object from the configuration structure
+alg_id = astra.algorithm.create(cfg)
+
+# Run 150 iterations of the algorithm
+astra.algorithm.run(alg_id, 150)
+
+# Get the result
+rec = astra.data2d.get(rec_id)
+pylab.figure(3)
+pylab.imshow(rec)
+pylab.show()
+
+# Clean up. Note that GPU memory is tied up in the algorithm object,
+# and main RAM in the data objects.
+astra.algorithm.delete(alg_id)
+astra.data2d.delete(rec_id)
+astra.data2d.delete(sinogram_id)
+astra.projector.delete(proj_id)
diff --git a/samples/python/s014_FBP.py b/samples/python/s014_FBP.py
new file mode 100644
index 0000000..2f8e388
--- /dev/null
+++ b/samples/python/s014_FBP.py
@@ -0,0 +1,76 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+import astra
+import numpy as np
+
+vol_geom = astra.create_vol_geom(256, 256)
+proj_geom = astra.create_proj_geom('parallel', 1.0, 384, np.linspace(0,np.pi,180,False))
+
+# As before, create a sinogram from a phantom
+import scipy.io
+P = scipy.io.loadmat('phantom.mat')['phantom256']
+proj_id = astra.create_projector('cuda',proj_geom,vol_geom)
+sinogram_id, sinogram = astra.create_sino(P, proj_id)
+
+import pylab
+pylab.gray()
+pylab.figure(1)
+pylab.imshow(P)
+pylab.figure(2)
+pylab.imshow(sinogram)
+
+# Create a data object for the reconstruction
+rec_id = astra.data2d.create('-vol', vol_geom)
+
+# create configuration
+cfg = astra.astra_dict('FBP_CUDA')
+cfg['ReconstructionDataId'] = rec_id
+cfg['ProjectionDataId'] = sinogram_id
+cfg['FilterType'] = 'Ram-Lak'
+
+# possible values for FilterType:
+# none, ram-lak, shepp-logan, cosine, hamming, hann, tukey, lanczos,
+# triangular, gaussian, barlett-hann, blackman, nuttall, blackman-harris,
+# blackman-nuttall, flat-top, kaiser, parzen
+
+
+# Create and run the algorithm object from the configuration structure
+alg_id = astra.algorithm.create(cfg)
+astra.algorithm.run(alg_id)
+
+# Get the result
+rec = astra.data2d.get(rec_id)
+pylab.figure(3)
+pylab.imshow(rec)
+pylab.show()
+
+# Clean up. Note that GPU memory is tied up in the algorithm object,
+# and main RAM in the data objects.
+astra.algorithm.delete(alg_id)
+astra.data2d.delete(rec_id)
+astra.data2d.delete(sinogram_id)
+astra.projector.delete(proj_id)
diff --git a/samples/python/s015_fp_bp.py b/samples/python/s015_fp_bp.py
new file mode 100644
index 0000000..fa0bf86
--- /dev/null
+++ b/samples/python/s015_fp_bp.py
@@ -0,0 +1,86 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+
+# This example demonstrates using the FP and BP primitives with Matlab's lsqr
+# solver. Calls to FP (astra.create_sino) and
+# BP (astra.create_backprojection) are wrapped in a function astra_wrap,
+# and a handle to this function is passed to lsqr.
+
+# Because in this case the inputs/outputs of FP and BP have to be vectors
+# instead of images (matrices), the calls require reshaping to and from vectors.
+
+import astra
+import numpy as np
+
+# FP/BP wrapper class
+class astra_wrap(object):
+ def __init__(self,proj_geom,vol_geom):
+ self.proj_id = astra.create_projector('cuda',proj_geom,vol_geom)
+ self.shape = (proj_geom['DetectorCount']*len(proj_geom['ProjectionAngles']),vol_geom['GridColCount']*vol_geom['GridRowCount'])
+ self.dtype = np.float
+
+ def matvec(self,v):
+ sid, s = astra.create_sino(np.reshape(v,(vol_geom['GridRowCount'],vol_geom['GridColCount'])),self.proj_id)
+ astra.data2d.delete(sid)
+ return s.flatten()
+
+ def rmatvec(self,v):
+ bid, b = astra.create_backprojection(np.reshape(v,(len(proj_geom['ProjectionAngles']),proj_geom['DetectorCount'],)),self.proj_id)
+ astra.data2d.delete(bid)
+ return b.flatten()
+
+vol_geom = astra.create_vol_geom(256, 256)
+proj_geom = astra.create_proj_geom('parallel', 1.0, 384, np.linspace(0,np.pi,180,False))
+
+# Create a 256x256 phantom image
+import scipy.io
+P = scipy.io.loadmat('phantom.mat')['phantom256']
+
+# Create a sinogram using the GPU.
+proj_id = astra.create_projector('cuda',proj_geom,vol_geom)
+sinogram_id, sinogram = astra.create_sino(P, proj_id)
+
+# Reshape the sinogram into a vector
+b = sinogram.flatten()
+
+# Call lsqr with ASTRA FP and BP
+import scipy.sparse.linalg
+wrapper = astra_wrap(proj_geom,vol_geom)
+result = scipy.sparse.linalg.lsqr(wrapper,b,atol=1e-4,btol=1e-4,iter_lim=25)
+
+# Reshape the result into an image
+Y = np.reshape(result[0],(vol_geom['GridRowCount'], vol_geom['GridColCount']));
+
+import pylab
+pylab.gray()
+pylab.imshow(Y)
+pylab.show()
+
+astra.data2d.delete(sinogram_id)
+astra.projector.delete(proj_id)
+astra.projector.delete(wrapper.proj_id)
+
diff --git a/samples/python/s016_plots.py b/samples/python/s016_plots.py
new file mode 100644
index 0000000..cd4d98c
--- /dev/null
+++ b/samples/python/s016_plots.py
@@ -0,0 +1,86 @@
+#-----------------------------------------------------------------------
+#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam
+#
+#Author: Daniel M. Pelt
+#Contact: D.M.Pelt@cwi.nl
+#Website: http://dmpelt.github.io/pyastratoolbox/
+#
+#
+#This file is part of the Python interface to the
+#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+#
+#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+#
+#-----------------------------------------------------------------------
+
+from six.moves import range
+import astra
+import numpy as np
+
+
+vol_geom = astra.create_vol_geom(256, 256)
+proj_geom = astra.create_proj_geom('parallel', 1.0, 384, np.linspace(0,np.pi,180,False))
+
+# As before, create a sinogram from a phantom
+import scipy.io
+P = scipy.io.loadmat('phantom.mat')['phantom256']
+proj_id = astra.create_projector('line',proj_geom,vol_geom)
+sinogram_id, sinogram = astra.create_sino(P, proj_id,useCUDA=True)
+
+import pylab
+pylab.gray()
+pylab.figure(1)
+pylab.imshow(P)
+pylab.figure(2)
+pylab.imshow(sinogram)
+
+# Create a data object for the reconstruction
+rec_id = astra.data2d.create('-vol', vol_geom)
+
+# Set up the parameters for a reconstruction algorithm using the GPU
+cfg = astra.astra_dict('SIRT_CUDA')
+cfg['ReconstructionDataId'] = rec_id
+cfg['ProjectionDataId'] = sinogram_id
+
+# Create the algorithm object from the configuration structure
+alg_id = astra.algorithm.create(cfg)
+
+# Run 1500 iterations of the algorithm one at a time, keeping track of errors
+nIters = 1500
+phantom_error = np.zeros(nIters)
+residual_error = np.zeros(nIters)
+for i in range(nIters):
+ # Run a single iteration
+ astra.algorithm.run(alg_id, 1)
+ residual_error[i] = astra.algorithm.get_res_norm(alg_id)
+ rec = astra.data2d.get(rec_id)
+ phantom_error[i] = np.sqrt(((rec - P)**2).sum())
+
+# Get the result
+rec = astra.data2d.get(rec_id)
+pylab.figure(3)
+pylab.imshow(rec)
+
+pylab.figure(4)
+pylab.plot(residual_error)
+pylab.figure(5)
+pylab.plot(phantom_error)
+
+pylab.show()
+
+# Clean up.
+astra.algorithm.delete(alg_id)
+astra.data2d.delete(rec_id)
+astra.data2d.delete(sinogram_id)
+astra.projector.delete(proj_id)
diff --git a/src/AsyncAlgorithm.cpp b/src/AsyncAlgorithm.cpp
index fcc4dcb..b265f59 100644
--- a/src/AsyncAlgorithm.cpp
+++ b/src/AsyncAlgorithm.cpp
@@ -160,32 +160,6 @@ void CAsyncAlgorithm::runWrapped(int _iNrIterations)
m_bDone = true;
}
-void CAsyncAlgorithm::timedJoin(int _milliseconds)
-{
-#ifndef USE_PTHREADS
- if (m_pThread) {
- boost::posix_time::milliseconds rel(_milliseconds);
- bool res = m_pThread->timed_join(rel);
- if (res) {
- delete m_pThread;
- m_pThread = 0;
- m_bThreadStarted = false;
- }
- }
-#else
- if (m_bThreadStarted) {
- struct timespec abstime;
- clock_gettime(CLOCK_REALTIME, &abstime);
- abstime.tv_sec += _milliseconds / 1000;
- abstime.tv_nsec += (_milliseconds % 1000) * 1000000L;
- int err = pthread_timedjoin_np(m_thread, 0, &abstime);
- if (err == 0) {
- m_bThreadStarted = false;
- }
- }
-#endif
-}
-
void CAsyncAlgorithm::signalAbort()
{
if (m_pAlg)
diff --git a/src/ConeProjectionGeometry3D.cpp b/src/ConeProjectionGeometry3D.cpp
index ec64701..1976901 100644
--- a/src/ConeProjectionGeometry3D.cpp
+++ b/src/ConeProjectionGeometry3D.cpp
@@ -28,6 +28,8 @@ $Id$
#include "astra/ConeProjectionGeometry3D.h"
+#include "astra/Logging.h"
+
#include <boost/lexical_cast.hpp>
#include <cstring>
@@ -186,17 +188,22 @@ bool CConeProjectionGeometry3D::isOfType(const std::string& _sType) const
}
//----------------------------------------------------------------------------------------
-void CConeProjectionGeometry3D::toXML(XMLNode* _sNode) const
+// Get the configuration object
+Config* CConeProjectionGeometry3D::getConfiguration() const
{
- _sNode->addAttribute("type", "cone");
- _sNode->addChildNode("DetectorSpacingX", m_fDetectorSpacingX);
- _sNode->addChildNode("DetectorSpacingY", m_fDetectorSpacingY);
- _sNode->addChildNode("DetectorRowCount", m_iDetectorRowCount);
- _sNode->addChildNode("DetectorColCount", m_iDetectorColCount);
- _sNode->addChildNode("ProjectionAngles", m_pfProjectionAngles, m_iProjectionAngleCount);
- _sNode->addChildNode("DistanceOriginDetector", m_fOriginDetectorDistance);
- _sNode->addChildNode("DistanceOriginSource", m_fOriginSourceDistance);
+ Config* cfg = new Config();
+ cfg->initialize("ProjectionGeometry3D");
+ cfg->self->addAttribute("type", "cone");
+ cfg->self->addChildNode("DetectorSpacingX", m_fDetectorSpacingX);
+ cfg->self->addChildNode("DetectorSpacingY", m_fDetectorSpacingY);
+ cfg->self->addChildNode("DetectorRowCount", m_iDetectorRowCount);
+ cfg->self->addChildNode("DetectorColCount", m_iDetectorColCount);
+ cfg->self->addChildNode("DistanceOriginDetector", m_fOriginDetectorDistance);
+ cfg->self->addChildNode("DistanceOriginSource", m_fOriginSourceDistance);
+ cfg->self->addChildNode("ProjectionAngles", m_pfProjectionAngles, m_iProjectionAngleCount);
+ return cfg;
}
+
//----------------------------------------------------------------------------------------
CVector3D CConeProjectionGeometry3D::getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex) const
@@ -225,4 +232,36 @@ CVector3D CConeProjectionGeometry3D::getProjectionDirection(int _iProjectionInde
return ret;
}
+void CConeProjectionGeometry3D::projectPoint(float32 fX, float32 fY, float32 fZ,
+ int iAngleIndex,
+ float32 &fU, float32 &fV) const
+{
+ ASTRA_ASSERT(iAngleIndex >= 0);
+ ASTRA_ASSERT(iAngleIndex < m_iProjectionAngleCount);
+
+ float alpha = m_pfProjectionAngles[iAngleIndex];
+
+ // Project point onto optical axis
+
+ // Projector direction is (cos(alpha), sin(alpha))
+ // Vector source->origin is (-sin(alpha), cos(alpha))
+
+ // Distance from source, projected on optical axis
+ float fD = -sin(alpha) * fX + cos(alpha) * fY + m_fOriginSourceDistance;
+
+ // Scale fZ to detector plane
+ fV = detectorOffsetYToRowIndexFloat( (fZ * (m_fOriginSourceDistance + m_fOriginDetectorDistance)) / fD );
+
+
+ // Orthogonal distance in XY-plane to optical axis
+ float fS = cos(alpha) * fX + sin(alpha) * fY;
+
+ // Scale fS to detector plane
+ fU = detectorOffsetXToColIndexFloat( (fS * (m_fOriginSourceDistance + m_fOriginDetectorDistance)) / fD );
+
+ ASTRA_DEBUG("alpha: %f, D: %f, V: %f, S: %f, U: %f", alpha, fD, fV, fS, fU);
+
+}
+
+
} // end namespace astra
diff --git a/src/ConeVecProjectionGeometry3D.cpp b/src/ConeVecProjectionGeometry3D.cpp
index 512b26c..9dc273d 100644
--- a/src/ConeVecProjectionGeometry3D.cpp
+++ b/src/ConeVecProjectionGeometry3D.cpp
@@ -198,18 +198,42 @@ bool CConeVecProjectionGeometry3D::isEqual(const CProjectionGeometry3D * _pGeom2
// is of type
bool CConeVecProjectionGeometry3D::isOfType(const std::string& _sType) const
{
- return (_sType == "cone3d_vec");
+ return (_sType == "cone_vec");
}
//----------------------------------------------------------------------------------------
-void CConeVecProjectionGeometry3D::toXML(XMLNode* _sNode) const
+// Get the configuration object
+Config* CConeVecProjectionGeometry3D::getConfiguration() const
{
- _sNode->addAttribute("type","cone3d_vec");
- _sNode->addChildNode("DetectorRowCount", m_iDetectorRowCount);
- _sNode->addChildNode("DetectorColCount", m_iDetectorColCount);
- // TODO:
- //_sNode->addChildNode("ProjectionAngles", m_pfProjectionAngles, m_iProjectionAngleCount);
+ Config* cfg = new Config();
+ cfg->initialize("ProjectionGeometry3D");
+
+ cfg->self->addAttribute("type", "cone_vec");
+ cfg->self->addChildNode("DetectorRowCount", m_iDetectorRowCount);
+ cfg->self->addChildNode("DetectorColCount", m_iDetectorColCount);
+
+ std::string vectors = "";
+ for (int i = 0; i < m_iProjectionAngleCount; ++i) {
+ SConeProjection& p = m_pProjectionAngles[i];
+ vectors += boost::lexical_cast<string>(p.fSrcX) + ",";
+ vectors += boost::lexical_cast<string>(p.fSrcY) + ",";
+ vectors += boost::lexical_cast<string>(p.fSrcZ) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetSX + 0.5f*m_iDetectorRowCount*p.fDetVX + 0.5f*m_iDetectorColCount*p.fDetUX) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetSY + 0.5f*m_iDetectorRowCount*p.fDetVY + 0.5f*m_iDetectorColCount*p.fDetUY) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetSZ + 0.5f*m_iDetectorRowCount*p.fDetVZ + 0.5f*m_iDetectorColCount*p.fDetUZ) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetUX) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetUY) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetUZ) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetVX) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetVY) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetVZ);
+ if (i < m_iProjectionAngleCount-1) vectors += ';';
+ }
+ cfg->self->addChildNode("Vectors", vectors);
+
+ return cfg;
}
+//----------------------------------------------------------------------------------------
CVector3D CConeVecProjectionGeometry3D::getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex) const
{
@@ -220,6 +244,26 @@ CVector3D CConeVecProjectionGeometry3D::getProjectionDirection(int _iProjectionI
return CVector3D(p.fDetSX + (u+0.5)*p.fDetUX + (v+0.5)*p.fDetVX - p.fSrcX, p.fDetSY + (u+0.5)*p.fDetUY + (v+0.5)*p.fDetVY - p.fSrcY, p.fDetSZ + (u+0.5)*p.fDetUZ + (v+0.5)*p.fDetVZ - p.fSrcZ);
}
+void CConeVecProjectionGeometry3D::projectPoint(float32 fX, float32 fY, float32 fZ,
+ int iAngleIndex,
+ float32 &fU, float32 &fV) const
+{
+ ASTRA_ASSERT(iAngleIndex >= 0);
+ ASTRA_ASSERT(iAngleIndex < m_iProjectionAngleCount);
+
+ double fUX, fUY, fUZ, fUC;
+ double fVX, fVY, fVZ, fVC;
+ double fDX, fDY, fDZ, fDC;
+
+ computeBP_UV_Coeffs(m_pProjectionAngles[iAngleIndex],
+ fUX, fUY, fUZ, fUC, fVX, fVY, fVZ, fVC, fDX, fDY, fDZ, fDC);
+
+ // The -0.5f shifts from corner to center of detector pixels
+ double fD = fDX*fX + fDY*fY + fDZ*fZ + fDC;
+ fU = (fUX*fX + fUY*fY + fUZ*fZ + fUC) / fD - 0.5f;
+ fV = (fVX*fX + fVY*fY + fVZ*fZ + fVC) / fD - 0.5f;
+}
+
//----------------------------------------------------------------------------------------
diff --git a/src/Config.cpp b/src/Config.cpp
index 3a3cb53..d860638 100644
--- a/src/Config.cpp
+++ b/src/Config.cpp
@@ -37,6 +37,9 @@ $Id$
#include "astra/Projector2D.h"
#include "astra/Projector3D.h"
+#include "astra/Logging.h"
+#include <sstream>
+
using namespace astra;
using namespace std;
@@ -54,12 +57,24 @@ Config::Config(XMLNode* _self)
self = _self;
}
+//-----------------------------------------------------------------------------
Config::~Config()
{
delete self;
self = 0;
}
+//-----------------------------------------------------------------------------
+void Config::initialize(std::string rootname)
+{
+ if (self == 0) {
+ XMLDocument* doc = XMLDocument::createDocument(rootname);
+ self = doc->getRootNode();
+ }
+}
+
+
+//-----------------------------------------------------------------------------
template <class T>
ConfigStackCheck<T>::ConfigStackCheck(const char *_name, T* _obj, const Config& _cfg)
: object(_obj), cfg(&_cfg), name(_name)
@@ -132,7 +147,9 @@ bool ConfigStackCheck<T>::stopParsing()
nodes.clear();
if (!errors.empty()) {
- cout << "Warning: " << name << ": unused configuration options: " << errors << std::endl;
+ ostringstream os;
+ os << name << ": unused configuration options: " << errors;
+ ASTRA_WARN(os.str().c_str());
return false;
}
diff --git a/src/CudaFilteredBackProjectionAlgorithm.cpp b/src/CudaFilteredBackProjectionAlgorithm.cpp
index 6593313..0badc20 100644
--- a/src/CudaFilteredBackProjectionAlgorithm.cpp
+++ b/src/CudaFilteredBackProjectionAlgorithm.cpp
@@ -32,8 +32,9 @@ $Id$
#include <cstring>
#include "astra/AstraObjectManager.h"
+#include "../cuda/2d/astra.h"
-#include <astra/Logger.h>
+#include "astra/Logging.h"
using namespace std;
using namespace astra;
@@ -104,7 +105,7 @@ bool CCudaFilteredBackProjectionAlgorithm::initialize(const Config& _cfg)
}
CC.markNodeParsed("FilterType");
ASTRA_DELETE(node);
-
+
// filter
node = _cfg.self->getSingleNode("FilterSinogramId");
if(node != NULL)
@@ -167,7 +168,7 @@ bool CCudaFilteredBackProjectionAlgorithm::initialize(const Config& _cfg)
CC.markOptionParsed("ShortScan");
}
-
+
m_pFBP = new AstraFBP;
@@ -185,7 +186,7 @@ bool CCudaFilteredBackProjectionAlgorithm::initialize(CFloat32ProjectionData2D *
{
clear();
}
-
+
// required classes
m_pSinogram = _pSinogram;
m_pReconstruction = _pReconstruction;
@@ -241,28 +242,65 @@ void CCudaFilteredBackProjectionAlgorithm::run(int _iNrIterations /* = 0 */)
bool ok = true;
- // TODO: off-center geometry, non-square pixels
+ // TODO: non-square pixels?
ok &= m_pFBP->setReconstructionGeometry(volgeom.getGridColCount(),
volgeom.getGridRowCount(),
volgeom.getPixelLengthX());
- // TODO: off-center geometry
int iDetectorCount;
if (parprojgeom) {
+
+ float *offsets, *angles, detSize, outputScale;
+
+ ok = convertAstraGeometry(&volgeom, parprojgeom, offsets, angles, detSize, outputScale);
+
+
ok &= m_pFBP->setProjectionGeometry(parprojgeom->getProjectionAngleCount(),
parprojgeom->getDetectorCount(),
- parprojgeom->getProjectionAngles(),
+ angles,
parprojgeom->getDetectorWidth());
iDetectorCount = parprojgeom->getDetectorCount();
+
+ // TODO: Are detSize and outputScale handled correctly?
+
+ if (offsets)
+ ok &= m_pFBP->setTOffsets(offsets);
+ ASTRA_ASSERT(ok);
+
+ delete[] offsets;
+ delete[] angles;
+
} else if (fanprojgeom) {
+
+ astraCUDA::SFanProjection* projs;
+ float outputScale;
+
+ // FIXME: Implement this, and clean up the interface to AstraFBP.
+ if (abs(volgeom.getWindowMinX() + volgeom.getWindowMaxX()) > 0.00001 * volgeom.getPixelLengthX()) {
+ // Off-center volume geometry isn't supported yet
+ ASTRA_ASSERT(false);
+ }
+ if (abs(volgeom.getWindowMinY() + volgeom.getWindowMaxY()) > 0.00001 * volgeom.getPixelLengthY()) {
+ // Off-center volume geometry isn't supported yet
+ ASTRA_ASSERT(false);
+ }
+
+ ok = convertAstraGeometry(&volgeom, fanprojgeom, projs, outputScale);
+
+ // CHECKME: outputScale?
+
ok &= m_pFBP->setFanGeometry(fanprojgeom->getProjectionAngleCount(),
- fanprojgeom->getDetectorCount(),
- fanprojgeom->getProjectionAngles(),
- fanprojgeom->getOriginSourceDistance(),
- fanprojgeom->getOriginDetectorDistance(),
- fanprojgeom->getDetectorWidth(),
- m_bShortScan);
+ fanprojgeom->getDetectorCount(),
+ projs,
+ fanprojgeom->getProjectionAngles(),
+ fanprojgeom->getOriginSourceDistance(),
+ fanprojgeom->getOriginDetectorDistance(),
+
+ fanprojgeom->getDetectorWidth(),
+ m_bShortScan);
iDetectorCount = fanprojgeom->getDetectorCount();
+
+ delete[] projs;
} else {
assert(false);
}
@@ -271,11 +309,6 @@ void CCudaFilteredBackProjectionAlgorithm::run(int _iNrIterations /* = 0 */)
ASTRA_ASSERT(ok);
- const float *pfTOffsets = m_pSinogram->getGeometry()->getExtraDetectorOffset();
- if (pfTOffsets)
- ok &= m_pFBP->setTOffsets(pfTOffsets);
- ASTRA_ASSERT(ok);
-
ok &= m_pFBP->init(m_iGPUIndex);
ASTRA_ASSERT(ok);
@@ -293,7 +326,7 @@ void CCudaFilteredBackProjectionAlgorithm::run(int _iNrIterations /* = 0 */)
const CVolumeGeometry2D& volgeom = *m_pReconstruction->getGeometry();
ok &= m_pFBP->getReconstruction(m_pReconstruction->getData(), volgeom.getGridColCount());
-
+
ASTRA_ASSERT(ok);
}
@@ -302,7 +335,7 @@ bool CCudaFilteredBackProjectionAlgorithm::check()
// check pointers
ASTRA_CONFIG_CHECK(m_pSinogram, "FBP_CUDA", "Invalid Projection Data Object.");
ASTRA_CONFIG_CHECK(m_pReconstruction, "FBP_CUDA", "Invalid Reconstruction Data Object.");
-
+
if((m_eFilter == FILTER_PROJECTION) || (m_eFilter == FILTER_SINOGRAM) || (m_eFilter == FILTER_RPROJECTION) || (m_eFilter == FILTER_RSINOGRAM))
{
ASTRA_CONFIG_CHECK(m_pfFilter, "FBP_CUDA", "Invalid filter pointer.");
@@ -354,7 +387,7 @@ static bool stringCompareLowerCase(const char * _stringA, const char * _stringB)
#else
iCmpReturn = strcasecmp(_stringA, _stringB);
#endif
-
+
return (iCmpReturn == 0);
}
@@ -452,7 +485,7 @@ E_FBPFILTER CCudaFilteredBackProjectionAlgorithm::_convertStringToFilter(const c
}
else
{
- cerr << "Failed to convert \"" << _filterType << "\" into a filter." << endl;
+ ASTRA_ERROR("Failed to convert \"%s\" into a filter.",_filterType);
}
return output;
diff --git a/src/CudaForwardProjectionAlgorithm.cpp b/src/CudaForwardProjectionAlgorithm.cpp
index 4865887..95abb62 100644
--- a/src/CudaForwardProjectionAlgorithm.cpp
+++ b/src/CudaForwardProjectionAlgorithm.cpp
@@ -42,6 +42,8 @@ $Id$
#include "astra/FanFlatVecProjectionGeometry2D.h"
#include "astra/CudaProjector2D.h"
+#include "astra/Logging.h"
+
using namespace std;
namespace astra {
@@ -104,7 +106,7 @@ bool CCudaForwardProjectionAlgorithm::initialize(const Config& _cfg)
id = boost::lexical_cast<int>(node->getContent());
CProjector2D *projector = CProjector2DManager::getSingleton().get(id);
if (!dynamic_cast<CCudaProjector2D*>(projector)) {
- cout << "Warning: non-CUDA Projector2D passed to FP_CUDA" << std::endl;
+ ASTRA_WARN("non-CUDA Projector2D passed to FP_CUDA");
}
delete node;
}
@@ -214,52 +216,45 @@ void CCudaForwardProjectionAlgorithm::run(int)
bool ok = false;
if (parProjGeom) {
+
+ float *offsets, *angles, detSize, outputScale;
+ ok = convertAstraGeometry(pVolGeom, parProjGeom, offsets, angles, detSize, outputScale);
+
+ ASTRA_ASSERT(ok); // FIXME
+
+ // FIXME: Output scaling
+
ok = astraCudaFP(m_pVolume->getDataConst(), m_pSinogram->getData(),
pVolGeom->getGridColCount(), pVolGeom->getGridRowCount(),
parProjGeom->getProjectionAngleCount(),
parProjGeom->getDetectorCount(),
- parProjGeom->getProjectionAngles(),
- parProjGeom->getExtraDetectorOffset(), parProjGeom->getDetectorWidth() / pVolGeom->getPixelLengthX(),
- m_iDetectorSuperSampling, m_iGPUIndex);
+ angles, offsets, detSize,
+ m_iDetectorSuperSampling, 1.0f * outputScale, m_iGPUIndex);
- } else if (fanProjGeom) {
+ delete[] offsets;
+ delete[] angles;
- ok = astraCudaFanFP(m_pVolume->getDataConst(), m_pSinogram->getData(),
- pVolGeom->getGridColCount(), pVolGeom->getGridRowCount(),
- fanProjGeom->getProjectionAngleCount(),
- fanProjGeom->getDetectorCount(),
- fanProjGeom->getProjectionAngles(),
- fanProjGeom->getOriginSourceDistance(),
- fanProjGeom->getOriginDetectorDistance(),
- pVolGeom->getPixelLengthX(),
- fanProjGeom->getDetectorWidth(),
- m_iDetectorSuperSampling, m_iGPUIndex);
-
- } else if (fanVecProjGeom) {
-
- // Rescale projs to fPixelSize == 1
- float fPixelSize = pVolGeom->getPixelLengthX();
- const astraCUDA::SFanProjection* projs;
- projs = fanVecProjGeom->getProjectionVectors();
-
- astraCUDA::SFanProjection* scaledProjs = new astraCUDA::SFanProjection[fanVecProjGeom->getProjectionAngleCount()];
-#define SCALE(name,i,alpha) do { scaledProjs[i].f##name##X = projs[i].f##name##X * alpha; scaledProjs[i].f##name##Y = projs[i].f##name##Y * alpha; } while (0)
- for (unsigned int i = 0; i < fanVecProjGeom->getProjectionAngleCount(); ++i) {
- SCALE(Src,i,1.0f/fPixelSize);
- SCALE(DetS,i,1.0f/fPixelSize);
- SCALE(DetU,i,1.0f/fPixelSize);
+ } else if (fanProjGeom || fanVecProjGeom) {
+
+ astraCUDA::SFanProjection* projs;
+ float outputScale;
+
+ if (fanProjGeom) {
+ ok = convertAstraGeometry(pVolGeom, fanProjGeom, projs, outputScale);
+ } else {
+ ok = convertAstraGeometry(pVolGeom, fanVecProjGeom, projs, outputScale);
}
+ ASTRA_ASSERT(ok);
ok = astraCudaFanFP(m_pVolume->getDataConst(), m_pSinogram->getData(),
pVolGeom->getGridColCount(), pVolGeom->getGridRowCount(),
- fanVecProjGeom->getProjectionAngleCount(),
- fanVecProjGeom->getDetectorCount(),
- scaledProjs,
- /* 1.0f / pVolGeom->getPixelLengthX(), */
- m_iDetectorSuperSampling, m_iGPUIndex);
+ m_pSinogram->getGeometry()->getProjectionAngleCount(),
+ m_pSinogram->getGeometry()->getDetectorCount(),
+ projs,
+ m_iDetectorSuperSampling, outputScale, m_iGPUIndex);
- delete[] scaledProjs;
+ delete[] projs;
} else {
diff --git a/src/CudaForwardProjectionAlgorithm3D.cpp b/src/CudaForwardProjectionAlgorithm3D.cpp
index 4ebecef..8e6bab5 100644
--- a/src/CudaForwardProjectionAlgorithm3D.cpp
+++ b/src/CudaForwardProjectionAlgorithm3D.cpp
@@ -40,6 +40,8 @@ $Id$
#include "astra/ParallelVecProjectionGeometry3D.h"
#include "astra/ConeVecProjectionGeometry3D.h"
+#include "astra/Logging.h"
+
#include "../cuda/3d/astra3d.h"
using namespace std;
@@ -251,6 +253,25 @@ void CCudaForwardProjectionAlgorithm3D::run(int)
projKernel = projector->getProjectionKernel();
}
+#if 0
+ // Debugging code that gives the coordinates of the corners of the volume
+ // projected on the detector.
+ {
+ float fX[] = { volgeom.getWindowMinX(), volgeom.getWindowMaxX() };
+ float fY[] = { volgeom.getWindowMinY(), volgeom.getWindowMaxY() };
+ float fZ[] = { volgeom.getWindowMinZ(), volgeom.getWindowMaxZ() };
+
+ for (int a = 0; a < projgeom->getProjectionCount(); ++a)
+ for (int i = 0; i < 2; ++i)
+ for (int j = 0; j < 2; ++j)
+ for (int k = 0; k < 2; ++k) {
+ float fU, fV;
+ projgeom->projectPoint(fX[i], fY[j], fZ[k], a, fU, fV);
+ ASTRA_DEBUG("%3d %c1,%c1,%c1 -> %12f %12f", a, i ? ' ' : '-', j ? ' ' : '-', k ? ' ' : '-', fU, fV);
+ }
+ }
+#endif
+
if (conegeom) {
astraCudaConeFP(m_pVolume->getDataConst(), m_pProjections->getData(),
volgeom.getGridColCount(),
diff --git a/src/CudaProjector3D.cpp b/src/CudaProjector3D.cpp
index f51433d..2f4c799 100644
--- a/src/CudaProjector3D.cpp
+++ b/src/CudaProjector3D.cpp
@@ -28,6 +28,9 @@ $Id$
#include "astra/CudaProjector3D.h"
+#include "astra/VolumeGeometry3D.h"
+#include "astra/ProjectionGeometry3D.h"
+
namespace astra
{
@@ -102,21 +105,7 @@ bool CCudaProjector3D::initialize(const Config& _cfg)
return false;
}
- // TODO: These should go to the parent.
-
- // ProjectionGeometry
- XMLNode* node = _cfg.self->getSingleNode("ProjectionGeometry");
- // TODO: Implement
- ASTRA_DELETE(node);
- CC.markNodeParsed("ProjectionGeometry");
-
- // ReconstructionGeometry
- node = _cfg.self->getSingleNode("VolumeGeometry");
- // TODO: Implement
- ASTRA_DELETE(node);
- CC.markNodeParsed("VolumeGeometry");
-
- node = _cfg.self->getSingleNode("ProjectionKernel");
+ XMLNode* node = _cfg.self->getSingleNode("ProjectionKernel");
m_projectionKernel = ker3d_default;
if (node) {
std::string sProjKernel = node->getContent();
diff --git a/src/CudaReconstructionAlgorithm2D.cpp b/src/CudaReconstructionAlgorithm2D.cpp
index 1d66137..1c6b763 100644
--- a/src/CudaReconstructionAlgorithm2D.cpp
+++ b/src/CudaReconstructionAlgorithm2D.cpp
@@ -37,6 +37,8 @@ $Id$
#include "astra/FanFlatVecProjectionGeometry2D.h"
#include "astra/CudaProjector2D.h"
+#include "astra/Logging.h"
+
#include "../cuda/2d/algo.h"
#include <ctime>
@@ -176,7 +178,7 @@ bool CCudaReconstructionAlgorithm2D::initialize(const Config& _cfg)
id = boost::lexical_cast<int>(node->getContent());
CProjector2D *projector = CProjector2DManager::getSingleton().get(id);
if (!dynamic_cast<CCudaProjector2D*>(projector)) {
- cout << "Warning: non-CUDA Projector2D passed" << std::endl;
+ ASTRA_WARN("non-CUDA Projector2D passed");
}
delete node;
}
@@ -350,7 +352,7 @@ bool CCudaReconstructionAlgorithm2D::setupGeometry()
const CVolumeGeometry2D& volgeom = *m_pReconstruction->getGeometry();
- // TODO: off-center geometry, non-square pixels
+ // TODO: non-square pixels?
dims.iVolWidth = volgeom.getGridColCount();
dims.iVolHeight = volgeom.getGridRowCount();
float fPixelSize = volgeom.getPixelLengthX();
@@ -365,66 +367,42 @@ bool CCudaReconstructionAlgorithm2D::setupGeometry()
if (parProjGeom) {
+ float *offsets, *angles, detSize, outputScale;
+
+ ok = convertAstraGeometry(&volgeom, parProjGeom, offsets, angles, detSize, outputScale);
+
dims.iProjAngles = parProjGeom->getProjectionAngleCount();
dims.iProjDets = parProjGeom->getDetectorCount();
dims.fDetScale = parProjGeom->getDetectorWidth() / fPixelSize;
ok = m_pAlgo->setGeometry(dims, parProjGeom->getProjectionAngles());
+ ok &= m_pAlgo->setTOffsets(offsets);
- } else if (fanProjGeom) {
+ // CHECKME: outputScale? detSize?
- dims.iProjAngles = fanProjGeom->getProjectionAngleCount();
- dims.iProjDets = fanProjGeom->getDetectorCount();
- dims.fDetScale = fanProjGeom->getDetectorWidth() / fPixelSize;
- float fOriginSourceDistance = fanProjGeom->getOriginSourceDistance();
- float fOriginDetectorDistance = fanProjGeom->getOriginDetectorDistance();
+ delete[] offsets;
+ delete[] angles;
- const float* angles = fanProjGeom->getProjectionAngles();
+ } else if (fanProjGeom || fanVecProjGeom) {
astraCUDA::SFanProjection* projs;
- projs = new astraCUDA::SFanProjection[dims.iProjAngles];
-
- float fSrcX0 = 0.0f;
- float fSrcY0 = -fOriginSourceDistance / fPixelSize;
- float fDetUX0 = dims.fDetScale;
- float fDetUY0 = 0.0f;
- float fDetSX0 = dims.iProjDets * fDetUX0 / -2.0f;
- float fDetSY0 = fOriginDetectorDistance / fPixelSize;
-
-#define ROTATE0(name,i,alpha) do { projs[i].f##name##X = f##name##X0 * cos(alpha) - f##name##Y0 * sin(alpha); projs[i].f##name##Y = f##name##X0 * sin(alpha) + f##name##Y0 * cos(alpha); } while(0)
- for (unsigned int i = 0; i < dims.iProjAngles; ++i) {
- ROTATE0(Src, i, angles[i]);
- ROTATE0(DetS, i, angles[i]);
- ROTATE0(DetU, i, angles[i]);
+ float outputScale;
+
+ if (fanProjGeom) {
+ ok = convertAstraGeometry(&volgeom, fanProjGeom, projs, outputScale);
+ } else {
+ ok = convertAstraGeometry(&volgeom, fanVecProjGeom, projs, outputScale);
}
-#undef ROTATE0
+ dims.iProjAngles = m_pSinogram->getGeometry()->getProjectionAngleCount();
+ dims.iProjDets = m_pSinogram->getGeometry()->getDetectorCount();
+ dims.fDetScale = m_pSinogram->getGeometry()->getDetectorWidth() / fPixelSize;
ok = m_pAlgo->setFanGeometry(dims, projs);
- delete[] projs;
-
- } else if (fanVecProjGeom) {
-
- dims.iProjAngles = fanVecProjGeom->getProjectionAngleCount();
- dims.iProjDets = fanVecProjGeom->getDetectorCount();
- dims.fDetScale = fanVecProjGeom->getDetectorWidth() / fPixelSize;
- const astraCUDA::SFanProjection* projs;
- projs = fanVecProjGeom->getProjectionVectors();
+ // CHECKME: outputScale?
- // Rescale projs to fPixelSize == 1
-
- astraCUDA::SFanProjection* scaledProjs = new astraCUDA::SFanProjection[dims.iProjAngles];
-#define SCALE(name,i,alpha) do { scaledProjs[i].f##name##X = projs[i].f##name##X * alpha; scaledProjs[i].f##name##Y = projs[i].f##name##Y * alpha; } while (0)
- for (unsigned int i = 0; i < dims.iProjAngles; ++i) {
- SCALE(Src,i,1.0f/fPixelSize);
- SCALE(DetS,i,1.0f/fPixelSize);
- SCALE(DetU,i,1.0f/fPixelSize);
- }
-
- ok = m_pAlgo->setFanGeometry(dims, scaledProjs);
-
- delete[] scaledProjs;
+ delete[] projs;
} else {
@@ -441,11 +419,6 @@ bool CCudaReconstructionAlgorithm2D::setupGeometry()
ok &= m_pAlgo->enableSinogramMask();
if (!ok) return false;
- const float *pfTOffsets = m_pSinogram->getGeometry()->getExtraDetectorOffset();
- if (pfTOffsets)
- ok &= m_pAlgo->setTOffsets(pfTOffsets);
- if (!ok) return false;
-
ok &= m_pAlgo->init();
if (!ok) return false;
diff --git a/src/FanFlatProjectionGeometry2D.cpp b/src/FanFlatProjectionGeometry2D.cpp
index bfc7fa9..d757f18 100644
--- a/src/FanFlatProjectionGeometry2D.cpp
+++ b/src/FanFlatProjectionGeometry2D.cpp
@@ -204,6 +204,20 @@ CVector3D CFanFlatProjectionGeometry2D::getProjectionDirection(int _iProjectionI
}
//----------------------------------------------------------------------------------------
+// Get the configuration object
+Config* CFanFlatProjectionGeometry2D::getConfiguration() const
+{
+ Config* cfg = new Config();
+ cfg->initialize("ProjectionGeometry2D");
+ cfg->self->addAttribute("type", "fanflat");
+ cfg->self->addChildNode("DetectorCount", getDetectorCount());
+ cfg->self->addChildNode("DetectorWidth", getDetectorWidth());
+ cfg->self->addChildNode("DistanceOriginSource", getOriginSourceDistance());
+ cfg->self->addChildNode("DistanceOriginDetector", getOriginDetectorDistance());
+ cfg->self->addChildNode("ProjectionAngles", m_pfProjectionAngles, m_iProjectionAngleCount);
+ return cfg;
+}
+//----------------------------------------------------------------------------------------
} // namespace astra
diff --git a/src/FanFlatVecProjectionGeometry2D.cpp b/src/FanFlatVecProjectionGeometry2D.cpp
index 77f9db7..9c7b596 100644
--- a/src/FanFlatVecProjectionGeometry2D.cpp
+++ b/src/FanFlatVecProjectionGeometry2D.cpp
@@ -194,7 +194,7 @@ bool CFanFlatVecProjectionGeometry2D::isEqual(CProjectionGeometry2D* _pGeom2) co
// Is of type
bool CFanFlatVecProjectionGeometry2D::isOfType(const std::string& _sType)
{
- return (_sType == "fanflat_vec");
+ return (_sType == "fanflat_vec");
}
//----------------------------------------------------------------------------------------
@@ -227,6 +227,28 @@ bool CFanFlatVecProjectionGeometry2D::_check()
//----------------------------------------------------------------------------------------
+// Get the configuration object
+Config* CFanFlatVecProjectionGeometry2D::getConfiguration() const
+{
+ Config* cfg = new Config();
+ cfg->initialize("ProjectionGeometry2D");
+ cfg->self->addAttribute("type", "fanflat_vec");
+ cfg->self->addChildNode("DetectorCount", getDetectorCount());
+ std::string vectors = "";
+ for (int i = 0; i < m_iProjectionAngleCount; ++i) {
+ SFanProjection& p = m_pProjectionAngles[i];
+ vectors += boost::lexical_cast<string>(p.fSrcX) + ",";
+ vectors += boost::lexical_cast<string>(p.fSrcY) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetSX + 0.5f * m_iDetectorCount * p.fDetUX) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetSY + 0.5f * m_iDetectorCount * p.fDetUY) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetUX) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetUY);
+ if (i < m_iProjectionAngleCount-1) vectors += ';';
+ }
+ cfg->self->addChildNode("Vectors", vectors);
+ return cfg;
+}
+//----------------------------------------------------------------------------------------
} // namespace astra
diff --git a/src/FilteredBackProjectionAlgorithm.cpp b/src/FilteredBackProjectionAlgorithm.cpp
index 50cf939..4a8e5ac 100644
--- a/src/FilteredBackProjectionAlgorithm.cpp
+++ b/src/FilteredBackProjectionAlgorithm.cpp
@@ -39,6 +39,8 @@ $Id$
#include "astra/Fourier.h"
#include "astra/DataProjector.h"
+#include "astra/Logging.h"
+
using namespace std;
namespace astra {
@@ -133,7 +135,7 @@ bool CFilteredBackProjectionAlgorithm::initialize(const Config& _cfg)
for (int i = 0; i < angleCount; i ++) {
if (projectionIndex[i] > m_pProjector->getProjectionGeometry()->getProjectionAngleCount() -1 )
{
- cout << "Invalid Projection Index" << endl;
+ ASTRA_ERROR("Invalid Projection Index");
return false;
} else {
int orgIndex = (int)projectionIndex[i];
diff --git a/src/GeometryUtil3D.cpp b/src/GeometryUtil3D.cpp
new file mode 100644
index 0000000..52dd5a9
--- /dev/null
+++ b/src/GeometryUtil3D.cpp
@@ -0,0 +1,75 @@
+/*
+-----------------------------------------------------------------------
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
+
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+
+This file is part of the ASTRA Toolbox.
+
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#include "astra/GeometryUtil3D.h"
+
+namespace astra {
+
+// (See declaration in header for (mathematical) description of these functions)
+
+
+void computeBP_UV_Coeffs(const SPar3DProjection& proj, double &fUX, double &fUY, double &fUZ, double &fUC,
+ double &fVX, double &fVY, double &fVZ, double &fVC)
+{
+ double denom = (proj.fRayX*proj.fDetUY*proj.fDetVZ - proj.fRayX*proj.fDetUZ*proj.fDetVY - proj.fRayY*proj.fDetUX*proj.fDetVZ + proj.fRayY*proj.fDetUZ*proj.fDetVX + proj.fRayZ*proj.fDetUX*proj.fDetVY - proj.fRayZ*proj.fDetUY*proj.fDetVX);
+
+ fUX = ( - (proj.fRayY*proj.fDetVZ - proj.fRayZ*proj.fDetVY)) / denom;
+ fUY = ( (proj.fRayX*proj.fDetVZ - proj.fRayZ*proj.fDetVX)) / denom;
+ fUZ = (- (proj.fRayX*proj.fDetVY - proj.fRayY*proj.fDetVX) ) / denom;
+ fUC = (-(proj.fDetSY*proj.fDetVZ - proj.fDetSZ*proj.fDetVY)*proj.fRayX + (proj.fRayY*proj.fDetVZ - proj.fRayZ*proj.fDetVY)*proj.fDetSX - (proj.fRayY*proj.fDetSZ - proj.fRayZ*proj.fDetSY)*proj.fDetVX) / denom;
+
+ fVX = ((proj.fRayY*proj.fDetUZ - proj.fRayZ*proj.fDetUY) ) / denom;
+ fVY = (- (proj.fRayX*proj.fDetUZ - proj.fRayZ*proj.fDetUX) ) / denom;
+ fVZ = ((proj.fRayX*proj.fDetUY - proj.fRayY*proj.fDetUX) ) / denom;
+ fVC = ((proj.fDetSY*proj.fDetUZ - proj.fDetSZ*proj.fDetUY)*proj.fRayX - (proj.fRayY*proj.fDetUZ - proj.fRayZ*proj.fDetUY)*proj.fDetSX + (proj.fRayY*proj.fDetSZ - proj.fRayZ*proj.fDetSY)*proj.fDetUX ) / denom;
+}
+
+
+
+void computeBP_UV_Coeffs(const SConeProjection& proj, double &fUX, double &fUY, double &fUZ, double &fUC,
+ double &fVX, double &fVY, double &fVZ, double &fVC,
+ double &fDX, double &fDY, double &fDZ, double &fDC)
+{
+ fUX = (proj.fDetSZ - proj.fSrcZ)*proj.fDetVY - (proj.fDetSY - proj.fSrcY)*proj.fDetVZ;
+ fUY = (proj.fDetSX - proj.fSrcX)*proj.fDetVZ -(proj.fDetSZ - proj.fSrcZ)*proj.fDetVX;
+ fUZ = (proj.fDetSY - proj.fSrcY)*proj.fDetVX - (proj.fDetSX - proj.fSrcX)*proj.fDetVY;
+ fUC = (proj.fDetSY*proj.fDetVZ - proj.fDetSZ*proj.fDetVY)*proj.fSrcX - (proj.fDetSX*proj.fDetVZ - proj.fDetSZ*proj.fDetVX)*proj.fSrcY + (proj.fDetSX*proj.fDetVY - proj.fDetSY*proj.fDetVX)*proj.fSrcZ;
+
+ fVX = (proj.fDetSY - proj.fSrcY)*proj.fDetUZ-(proj.fDetSZ - proj.fSrcZ)*proj.fDetUY;
+ fVY = (proj.fDetSZ - proj.fSrcZ)*proj.fDetUX - (proj.fDetSX - proj.fSrcX)*proj.fDetUZ;
+ fVZ = (proj.fDetSX - proj.fSrcX)*proj.fDetUY-(proj.fDetSY - proj.fSrcY)*proj.fDetUX;
+ fVC = -(proj.fDetSY*proj.fDetUZ - proj.fDetSZ*proj.fDetUY)*proj.fSrcX + (proj.fDetSX*proj.fDetUZ - proj.fDetSZ*proj.fDetUX)*proj.fSrcY - (proj.fDetSX*proj.fDetUY - proj.fDetSY*proj.fDetUX)*proj.fSrcZ;
+
+ fDX = proj.fDetUY*proj.fDetVZ - proj.fDetUZ*proj.fDetVY;
+ fDY = proj.fDetUZ*proj.fDetVX - proj.fDetUX*proj.fDetVZ;
+ fDZ = proj.fDetUX*proj.fDetVY - proj.fDetUY*proj.fDetVX;
+ fDC = -proj.fSrcX * (proj.fDetUY*proj.fDetVZ - proj.fDetUZ*proj.fDetVY) - proj.fSrcY * (proj.fDetUZ*proj.fDetVX - proj.fDetUX*proj.fDetVZ) - proj.fSrcZ * (proj.fDetUX*proj.fDetVY - proj.fDetUY*proj.fDetVX);
+}
+
+
+}
diff --git a/src/Logging.cpp b/src/Logging.cpp
new file mode 100644
index 0000000..8290ca0
--- /dev/null
+++ b/src/Logging.cpp
@@ -0,0 +1,184 @@
+/*
+-----------------------------------------------------------------------
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
+
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+
+This file is part of the ASTRA Toolbox.
+
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#define CLOG_MAIN
+#include <astra/clog.h>
+
+#include <astra/Logging.h>
+
+#include <cstdio>
+
+using namespace astra;
+
+void CLogger::enableScreen()
+{
+ m_bEnabledScreen = true;
+}
+
+void CLogger::enableFile()
+{
+ m_bEnabledFile = true;
+}
+
+void CLogger::enable()
+{
+ enableScreen();
+ enableFile();
+}
+
+void CLogger::disableScreen()
+{
+ m_bEnabledScreen = false;
+}
+
+void CLogger::disableFile()
+{
+ m_bEnabledFile = false;
+}
+
+void CLogger::disable()
+{
+ disableScreen();
+ disableFile();
+}
+
+void CLogger::debug(const char *sfile, int sline, const char *fmt, ...)
+{
+ _assureIsInitialized();
+ va_list ap;
+ va_start(ap, fmt);
+ if(m_bEnabledScreen) clog_debug(sfile,sline,0,fmt,ap);
+ if(m_bEnabledFile && m_bFileProvided) clog_debug(sfile,sline,1,fmt,ap);
+}
+
+void CLogger::info(const char *sfile, int sline, const char *fmt, ...)
+{
+ _assureIsInitialized();
+ va_list ap;
+ va_start(ap, fmt);
+ if(m_bEnabledScreen) clog_info(sfile,sline,0,fmt,ap);
+ if(m_bEnabledFile && m_bFileProvided) clog_info(sfile,sline,1,fmt,ap);
+}
+
+void CLogger::warn(const char *sfile, int sline, const char *fmt, ...)
+{
+ _assureIsInitialized();
+ va_list ap;
+ va_start(ap, fmt);
+ if(m_bEnabledScreen) clog_warn(sfile,sline,0,fmt,ap);
+ if(m_bEnabledFile && m_bFileProvided) clog_warn(sfile,sline,1,fmt,ap);
+}
+
+void CLogger::error(const char *sfile, int sline, const char *fmt, ...)
+{
+ _assureIsInitialized();
+ va_list ap;
+ va_start(ap, fmt);
+ if(m_bEnabledScreen) clog_error(sfile,sline,0,fmt,ap);
+ if(m_bEnabledFile && m_bFileProvided) clog_error(sfile,sline,1,fmt,ap);
+}
+
+void CLogger::_setLevel(int id, log_level m_eLevel)
+{
+ switch(m_eLevel){
+ case LOG_DEBUG:
+ clog_set_level(id,CLOG_DEBUG);
+ break;
+ case LOG_INFO:
+ clog_set_level(id,CLOG_INFO);
+ break;
+ case LOG_WARN:
+ clog_set_level(id,CLOG_WARN);
+ break;
+ case LOG_ERROR:
+ clog_set_level(id,CLOG_ERROR);
+ break;
+ }
+}
+
+void CLogger::setOutputScreen(int fd, log_level m_eLevel)
+{
+ _assureIsInitialized();
+ if(fd==1||fd==2){
+ clog_set_fd(0, fd);
+ }else{
+ error(__FILE__,__LINE__,"Invalid file descriptor");
+ }
+ _setLevel(0,m_eLevel);
+}
+
+void CLogger::setOutputFile(const char *filename, log_level m_eLevel)
+{
+ if(m_bFileProvided){
+ clog_free(1);
+ m_bFileProvided=false;
+ }
+ if(!clog_init_path(1,filename)){
+ m_bFileProvided=true;
+ _setLevel(1,m_eLevel);
+ }
+}
+
+void CLogger::_assureIsInitialized()
+{
+ if(!m_bInitialized)
+ {
+ clog_init_fd(0, 2);
+ clog_set_level(0, CLOG_INFO);
+ clog_set_fmt(0, "%l: %m\n");
+ m_bInitialized = true;
+ }
+}
+
+void CLogger::setFormatFile(const char *fmt)
+{
+ if(m_bFileProvided){
+ clog_set_fmt(1,fmt);
+ }else{
+ error(__FILE__,__LINE__,"No log file specified");
+ }
+}
+void CLogger::setFormatScreen(const char *fmt)
+{
+ clog_set_fmt(0,fmt);
+}
+
+CLogger::CLogger()
+{
+ ;
+}
+
+bool CLogger::setCallbackScreen(void (*cb)(const char *msg, size_t len)){
+ _assureIsInitialized();
+ return clog_set_cb(0,cb)==0;
+}
+
+bool CLogger::m_bEnabledScreen = true;
+bool CLogger::m_bEnabledFile = true;
+bool CLogger::m_bFileProvided = false;
+bool CLogger::m_bInitialized = false;
diff --git a/src/ParallelProjectionGeometry2D.cpp b/src/ParallelProjectionGeometry2D.cpp
index 8f8faa4..cac8f30 100644
--- a/src/ParallelProjectionGeometry2D.cpp
+++ b/src/ParallelProjectionGeometry2D.cpp
@@ -27,6 +27,7 @@ $Id$
*/
#include "astra/ParallelProjectionGeometry2D.h"
+#include <boost/lexical_cast.hpp>
#include <cstring>
@@ -168,6 +169,19 @@ bool CParallelProjectionGeometry2D::isOfType(const std::string& _sType)
{
return (_sType == "parallel");
}
+
+//----------------------------------------------------------------------------------------
+// Get the configuration object
+Config* CParallelProjectionGeometry2D::getConfiguration() const
+{
+ Config* cfg = new Config();
+ cfg->initialize("ProjectionGeometry2D");
+ cfg->self->addAttribute("type", "parallel");
+ cfg->self->addChildNode("DetectorCount", getDetectorCount());
+ cfg->self->addChildNode("DetectorWidth", getDetectorWidth());
+ cfg->self->addChildNode("ProjectionAngles", m_pfProjectionAngles, m_iProjectionAngleCount);
+ return cfg;
+}
//----------------------------------------------------------------------------------------
CVector3D CParallelProjectionGeometry2D::getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex /* = 0 */)
diff --git a/src/ParallelProjectionGeometry3D.cpp b/src/ParallelProjectionGeometry3D.cpp
index 104fc6e..eb200f9 100644
--- a/src/ParallelProjectionGeometry3D.cpp
+++ b/src/ParallelProjectionGeometry3D.cpp
@@ -27,6 +27,7 @@ $Id$
*/
#include "astra/ParallelProjectionGeometry3D.h"
+#include <boost/lexical_cast.hpp>
#include <cstring>
@@ -154,19 +155,24 @@ bool CParallelProjectionGeometry3D::isEqual(const CProjectionGeometry3D * _pGeom
// is of type
bool CParallelProjectionGeometry3D::isOfType(const std::string& _sType) const
{
- return (_sType == "parallel");
+ return (_sType == "parallel3d");
}
//----------------------------------------------------------------------------------------
-void CParallelProjectionGeometry3D::toXML(XMLNode* _sNode) const
+// Get the configuration object
+Config* CParallelProjectionGeometry3D::getConfiguration() const
{
- _sNode->addAttribute("type","parallel3d");
- _sNode->addChildNode("DetectorSpacingX", m_fDetectorSpacingX);
- _sNode->addChildNode("DetectorSpacingY", m_fDetectorSpacingY);
- _sNode->addChildNode("DetectorRowCount", m_iDetectorRowCount);
- _sNode->addChildNode("DetectorColCount", m_iDetectorColCount);
- _sNode->addChildNode("ProjectionAngles", m_pfProjectionAngles, m_iProjectionAngleCount);
+ Config* cfg = new Config();
+ cfg->initialize("ProjectionGeometry3D");
+ cfg->self->addAttribute("type", "parallel3d");
+ cfg->self->addChildNode("DetectorRowCount", m_iDetectorRowCount);
+ cfg->self->addChildNode("DetectorColCount", m_iDetectorColCount);
+ cfg->self->addChildNode("DetectorSpacingX", m_fDetectorSpacingX);
+ cfg->self->addChildNode("DetectorSpacingY", m_fDetectorSpacingY);
+ cfg->self->addChildNode("ProjectionAngles", m_pfProjectionAngles, m_iProjectionAngleCount);
+ return cfg;
}
+//----------------------------------------------------------------------------------------
CVector3D CParallelProjectionGeometry3D::getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex) const
{
@@ -179,6 +185,22 @@ CVector3D CParallelProjectionGeometry3D::getProjectionDirection(int _iProjection
return CVector3D(fDirX, fDirY, fDirZ);
}
+void CParallelProjectionGeometry3D::projectPoint(float32 fX, float32 fY, float32 fZ,
+ int iAngleIndex,
+ float32 &fU, float32 &fV) const
+{
+ ASTRA_ASSERT(iAngleIndex >= 0);
+ ASTRA_ASSERT(iAngleIndex < m_iProjectionAngleCount);
+
+ // V (detector row)
+ fV = detectorOffsetYToRowIndexFloat(fZ);
+
+ // U (detector column)
+ float alpha = m_pfProjectionAngles[iAngleIndex];
+ // projector direction is (cos(alpha), sin(alpha))
+ fU = detectorOffsetXToColIndexFloat(cos(alpha) * fX + sin(alpha) * fY);
+}
+
CParallelProjectionGeometry2D * CParallelProjectionGeometry3D::createProjectionGeometry2D() const
{
const float32 * pfProjectionAngles = getProjectionAngles(); //new float32[getProjectionCount()];
diff --git a/src/ParallelVecProjectionGeometry3D.cpp b/src/ParallelVecProjectionGeometry3D.cpp
index c8071a6..dc325e9 100644
--- a/src/ParallelVecProjectionGeometry3D.cpp
+++ b/src/ParallelVecProjectionGeometry3D.cpp
@@ -202,14 +202,38 @@ bool CParallelVecProjectionGeometry3D::isOfType(const std::string& _sType) const
}
//----------------------------------------------------------------------------------------
-void CParallelVecProjectionGeometry3D::toXML(XMLNode* _sNode) const
+// Get the configuration object
+Config* CParallelVecProjectionGeometry3D::getConfiguration() const
{
- _sNode->addAttribute("type","parallel3d_vec");
- _sNode->addChildNode("DetectorRowCount", m_iDetectorRowCount);
- _sNode->addChildNode("DetectorColCount", m_iDetectorColCount);
- // TODO:
- //_sNode->addChildNode("ProjectionAngles", m_pfProjectionAngles, m_iProjectionAngleCount);
+ Config* cfg = new Config();
+ cfg->initialize("ProjectionGeometry3D");
+
+ cfg->self->addAttribute("type", "parallel3d_vec");
+ cfg->self->addChildNode("DetectorRowCount", m_iDetectorRowCount);
+ cfg->self->addChildNode("DetectorColCount", m_iDetectorColCount);
+
+ std::string vectors = "";
+ for (int i = 0; i < m_iProjectionAngleCount; ++i) {
+ SPar3DProjection& p = m_pProjectionAngles[i];
+ vectors += boost::lexical_cast<string>(p.fRayX) + ",";
+ vectors += boost::lexical_cast<string>(p.fRayY) + ",";
+ vectors += boost::lexical_cast<string>(p.fRayZ) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetSX + 0.5f*m_iDetectorRowCount*p.fDetVX + 0.5f*m_iDetectorColCount*p.fDetUX) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetSY + 0.5f*m_iDetectorRowCount*p.fDetVY + 0.5f*m_iDetectorColCount*p.fDetUY) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetSZ + 0.5f*m_iDetectorRowCount*p.fDetVZ + 0.5f*m_iDetectorColCount*p.fDetUZ) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetUX) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetUY) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetUZ) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetVX) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetVY) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetVZ);
+ if (i < m_iProjectionAngleCount-1) vectors += ';';
+ }
+ cfg->self->addChildNode("Vectors", vectors);
+
+ return cfg;
}
+//----------------------------------------------------------------------------------------
CVector3D CParallelVecProjectionGeometry3D::getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex) const
{
@@ -218,6 +242,24 @@ CVector3D CParallelVecProjectionGeometry3D::getProjectionDirection(int _iProject
return CVector3D(p.fRayX, p.fRayY, p.fRayZ);
}
+void CParallelVecProjectionGeometry3D::projectPoint(float32 fX, float32 fY, float32 fZ,
+ int iAngleIndex,
+ float32 &fU, float32 &fV) const
+{
+ ASTRA_ASSERT(iAngleIndex >= 0);
+ ASTRA_ASSERT(iAngleIndex < m_iProjectionAngleCount);
+
+ double fUX, fUY, fUZ, fUC;
+ double fVX, fVY, fVZ, fVC;
+
+ computeBP_UV_Coeffs(m_pProjectionAngles[iAngleIndex],
+ fUX, fUY, fUZ, fUC, fVX, fVY, fVZ, fVC);
+
+ // The -0.5f shifts from corner to center of detector pixels
+ fU = (fUX*fX + fUY*fY + fUZ*fZ + fUC) - 0.5f;
+ fV = (fVX*fX + fVY*fY + fVZ*fZ + fVC) - 0.5f;
+
+}
//----------------------------------------------------------------------------------------
diff --git a/src/Projector3D.cpp b/src/Projector3D.cpp
index 0f5edb7..b546ee9 100644
--- a/src/Projector3D.cpp
+++ b/src/Projector3D.cpp
@@ -28,6 +28,12 @@ $Id$
#include "astra/Projector3D.h"
+#include "astra/VolumeGeometry3D.h"
+#include "astra/ParallelProjectionGeometry3D.h"
+#include "astra/ParallelVecProjectionGeometry3D.h"
+#include "astra/ConeProjectionGeometry3D.h"
+#include "astra/ConeVecProjectionGeometry3D.h"
+
namespace astra
{
@@ -84,6 +90,37 @@ bool CProjector3D::_check()
bool CProjector3D::initialize(const Config& _cfg)
{
assert(_cfg.self);
+ ConfigStackCheck<CProjector3D> CC("Projector3D", this, _cfg);
+
+ XMLNode* node;
+
+ node = _cfg.self->getSingleNode("ProjectionGeometry");
+ ASTRA_CONFIG_CHECK(node, "Projector3D", "No ProjectionGeometry tag specified.");
+ std::string type = node->getAttribute("type");
+ CProjectionGeometry3D* pProjGeometry = 0;
+ if (type == "parallel3d") {
+ pProjGeometry = new CParallelProjectionGeometry3D();
+ } else if (type == "parallel3d_vec") {
+ pProjGeometry = new CParallelVecProjectionGeometry3D();
+ } else if (type == "cone") {
+ pProjGeometry = new CConeProjectionGeometry3D();
+ } else if (type == "cone_vec") {
+ pProjGeometry = new CConeVecProjectionGeometry3D();
+ } else {
+ // Invalid geometry type
+ }
+ pProjGeometry->initialize(Config(node)); // this deletes node
+ m_pProjectionGeometry = pProjGeometry;
+ ASTRA_CONFIG_CHECK(m_pProjectionGeometry->isInitialized(), "Projector3D", "ProjectionGeometry not initialized.");
+ CC.markNodeParsed("ProjectionGeometry");
+
+ node = _cfg.self->getSingleNode("VolumeGeometry");
+ ASTRA_CONFIG_CHECK(node, "Projector3D", "No VolumeGeometry tag specified.");
+ CVolumeGeometry3D* pVolGeometry = new CVolumeGeometry3D();
+ pVolGeometry->initialize(Config(node)); // this deletes node
+ m_pVolumeGeometry = pVolGeometry;
+ ASTRA_CONFIG_CHECK(m_pVolumeGeometry->isInitialized(), "Projector2D", "VolumeGeometry not initialized.");
+ CC.markNodeParsed("VolumeGeometry");
return true;
}
diff --git a/src/ReconstructionAlgorithm3D.cpp b/src/ReconstructionAlgorithm3D.cpp
index 0ce9777..13d069d 100644
--- a/src/ReconstructionAlgorithm3D.cpp
+++ b/src/ReconstructionAlgorithm3D.cpp
@@ -145,7 +145,6 @@ bool CReconstructionAlgorithm3D::initialize(const Config& _cfg)
id = boost::lexical_cast<int>(_cfg.self->getOption("SinogramMaskId"));
m_pSinogramMask = dynamic_cast<CFloat32ProjectionData3D*>(CData3DManager::getSingleton().get(id));
}
- CC.markOptionParsed("SinogramMaskId");
// Constraints - NEW
if (_cfg.self->hasOption("MinConstraint")) {
diff --git a/src/SparseMatrixProjectionGeometry2D.cpp b/src/SparseMatrixProjectionGeometry2D.cpp
index 7f14d9d..86357d2 100644
--- a/src/SparseMatrixProjectionGeometry2D.cpp
+++ b/src/SparseMatrixProjectionGeometry2D.cpp
@@ -189,7 +189,20 @@ bool CSparseMatrixProjectionGeometry2D::isOfType(const std::string& _sType)
return (_sType == "sparse_matrix");
}
//----------------------------------------------------------------------------------------
+// Get the configuration object
+Config* CSparseMatrixProjectionGeometry2D::getConfiguration() const
+{
+ Config* cfg = new Config();
+ cfg->initialize("ProjectionGeometry2D");
+ cfg->self->addAttribute("type", "sparse matrix");
+ cfg->self->addChildNode("DetectorCount", getDetectorCount());
+ cfg->self->addChildNode("DetectorWidth", getDetectorWidth());
+ cfg->self->addChildNode("ProjectionAngles", m_pfProjectionAngles, m_iProjectionAngleCount);
+ cfg->self->addChildNode("MatrixID", CMatrixManager::getSingleton().getIndex(m_pMatrix));
+ return cfg;
+}
+//----------------------------------------------------------------------------------------
CVector3D CSparseMatrixProjectionGeometry2D::getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex)
{
CVector3D vOutput(0.0f, 0.0f, 0.0f);
diff --git a/src/VolumeGeometry2D.cpp b/src/VolumeGeometry2D.cpp
index 19aa905..d412914 100644
--- a/src/VolumeGeometry2D.cpp
+++ b/src/VolumeGeometry2D.cpp
@@ -152,7 +152,7 @@ CVolumeGeometry2D* CVolumeGeometry2D::clone()
}
//----------------------------------------------------------------------------------------
-// Initialization witha COnfig object
+// Initialization witha Config object
bool CVolumeGeometry2D::initialize(const Config& _cfg)
{
ASTRA_ASSERT(_cfg.self);
@@ -277,6 +277,24 @@ bool CVolumeGeometry2D::isEqual(CVolumeGeometry2D* _pGeom2) const
return true;
}
+
+//----------------------------------------------------------------------------------------
+// Get the configuration object
+Config* CVolumeGeometry2D::getConfiguration() const
+{
+ Config* cfg = new Config();
+ cfg->initialize("VolumeGeometry2D");
+
+ cfg->self->addChildNode("GridColCount", m_iGridColCount);
+ cfg->self->addChildNode("GridRowCount", m_iGridRowCount);
+
+ cfg->self->addOption("WindowMinX", m_fWindowMinX);
+ cfg->self->addOption("WindowMaxX", m_fWindowMaxX);
+ cfg->self->addOption("WindowMinY", m_fWindowMinY);
+ cfg->self->addOption("WindowMaxY", m_fWindowMaxY);
+
+ return cfg;
+}
//----------------------------------------------------------------------------------------
} // namespace astra
diff --git a/src/VolumeGeometry3D.cpp b/src/VolumeGeometry3D.cpp
index d7a93a9..66e6f0c 100644
--- a/src/VolumeGeometry3D.cpp
+++ b/src/VolumeGeometry3D.cpp
@@ -380,5 +380,28 @@ CVolumeGeometry2D * CVolumeGeometry3D::createVolumeGeometry2D() const
}
//----------------------------------------------------------------------------------------
+// Get the configuration object
+Config* CVolumeGeometry3D::getConfiguration() const
+{
+ Config* cfg = new Config();
+ cfg->initialize("VolumeGeometry3D");
+
+ cfg->self->addChildNode("GridColCount", m_iGridColCount);
+ cfg->self->addChildNode("GridRowCount", m_iGridRowCount);
+ cfg->self->addChildNode("GridSliceCount", m_iGridSliceCount);
+
+ cfg->self->addOption("WindowMinX", m_fWindowMinX);
+ cfg->self->addOption("WindowMaxX", m_fWindowMaxX);
+ cfg->self->addOption("WindowMinY", m_fWindowMinY);
+ cfg->self->addOption("WindowMaxY", m_fWindowMaxY);
+ cfg->self->addOption("WindowMinZ", m_fWindowMinZ);
+ cfg->self->addOption("WindowMaxZ", m_fWindowMaxZ);
+
+ return cfg;
+}
+//----------------------------------------------------------------------------------------
+
+
+//----------------------------------------------------------------------------------------
} // namespace astra
diff --git a/src/XMLDocument.cpp b/src/XMLDocument.cpp
index b39875b..406564f 100644
--- a/src/XMLDocument.cpp
+++ b/src/XMLDocument.cpp
@@ -109,4 +109,12 @@ void XMLDocument::saveToFile(string sFilename)
}
//-----------------------------------------------------------------------------
+std::string XMLDocument::toString()
+{
+ std::stringstream ss;
+ ss << *fDOMDocument->first_node();
+ return ss.str();
+}
+
+//-----------------------------------------------------------------------------
diff --git a/src/XMLNode.cpp b/src/XMLNode.cpp
index a5b6796..4b2bdf4 100644
--- a/src/XMLNode.cpp
+++ b/src/XMLNode.cpp
@@ -448,13 +448,11 @@ void XMLNode::setContent(float32 _fValue)
// Set content - LIST
void XMLNode::setContent(float32* pfList, int _iSize)
{
- addAttribute("listsize", _iSize);
- for (int i = 0; i < _iSize; i++) {
- XMLNode* item = addChildNode("ListItem");
- item->addAttribute("index", i);
- item->addAttribute("value",pfList[i]);
- delete item;
+ std::string str = (_iSize > 0) ? boost::lexical_cast<std::string>(pfList[0]) : "";
+ for (int i = 1; i < _iSize; i++) {
+ str += "," + boost::lexical_cast<std::string>(pfList[i]);
}
+ setContent(str);
}
//-----------------------------------------------------------------------------