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-rw-r--r--python/astra/data2d_c.pyx57
-rw-r--r--python/astra/data3d.py11
-rw-r--r--python/astra/data3d_c.pyx63
3 files changed, 70 insertions, 61 deletions
diff --git a/python/astra/data2d_c.pyx b/python/astra/data2d_c.pyx
index 203fde2..9c88073 100644
--- a/python/astra/data2d_c.pyx
+++ b/python/astra/data2d_c.pyx
@@ -83,8 +83,10 @@ def create(datatype, geometry, data=None, link=False):
cdef CFloat32Data2D * pDataObject2D
cdef CFloat32CustomMemory * pCustom
- if link and data.shape!=geom_size(geometry):
- raise Exception("The dimensions of the data do not match those specified in the geometry.")
+ if link:
+ geom_shape = geom_size(geometry)
+ if data.shape != geom_shape:
+ raise ValueError("The dimensions of the data do not match those specified in the geometry: {} != {}".format(data.shape, geom_shape))
if datatype == '-vol':
cfg = utils.dictToConfig(six.b('VolumeGeometry'), geometry)
@@ -92,7 +94,7 @@ def create(datatype, geometry, data=None, link=False):
if not pGeometry.initialize(cfg[0]):
del cfg
del pGeometry
- raise Exception('Geometry class not initialized.')
+ raise RuntimeError('Geometry class not initialized.')
if link:
pCustom = <CFloat32CustomMemory*> new CFloat32CustomPython(data)
pDataObject2D = <CFloat32Data2D * > new CFloat32VolumeData2D(pGeometry, pCustom)
@@ -114,7 +116,7 @@ def create(datatype, geometry, data=None, link=False):
if not ppGeometry.initialize(cfg[0]):
del cfg
del ppGeometry
- raise Exception('Geometry class not initialized.')
+ raise RuntimeError('Geometry class not initialized.')
if link:
pCustom = <CFloat32CustomMemory*> new CFloat32CustomPython(data)
pDataObject2D = <CFloat32Data2D * > new CFloat32ProjectionData2D(ppGeometry, pCustom)
@@ -123,11 +125,11 @@ def create(datatype, geometry, data=None, link=False):
del ppGeometry
del cfg
else:
- raise Exception("Invalid datatype. Please specify '-vol' or '-sino'.")
+ raise ValueError("Invalid datatype. Please specify '-vol' or '-sino'.")
if not pDataObject2D.isInitialized():
del pDataObject2D
- raise Exception("Couldn't initialize data object.")
+ raise RuntimeError("Couldn't initialize data object.")
if not link: fillDataObject(pDataObject2D, data)
@@ -138,6 +140,10 @@ cdef fillDataObject(CFloat32Data2D * obj, data):
fillDataObjectScalar(obj, 0)
else:
if isinstance(data, np.ndarray):
+ obj_shape = (obj.getHeight(), obj.getWidth())
+ if data.shape != obj_shape:
+ raise ValueError(
+ "The dimensions of the data do not match those specified in the geometry: {} != {}".format(data.shape, obj_shape))
fillDataObjectArray(obj, np.ascontiguousarray(data,dtype=np.float32))
else:
fillDataObjectScalar(obj, np.float32(data))
@@ -150,18 +156,15 @@ cdef fillDataObjectScalar(CFloat32Data2D * obj, float s):
@cython.boundscheck(False)
@cython.wraparound(False)
cdef fillDataObjectArray(CFloat32Data2D * obj, float [:,::1] data):
- if (not data.shape[0] == obj.getHeight()) or (not data.shape[1] == obj.getWidth()):
- raise Exception(
- "The dimensions of the data do not match those specified in the geometry.")
cdef float [:,::1] cView = <float[:data.shape[0],:data.shape[1]]> obj.getData2D()[0]
cView[:] = data
cdef CFloat32Data2D * getObject(i) except NULL:
cdef CFloat32Data2D * pDataObject = man2d.get(i)
if pDataObject == NULL:
- raise Exception("Data object not found")
+ raise ValueError("Data object not found")
if not pDataObject.isInitialized():
- raise Exception("Data object not initialized properly.")
+ raise RuntimeError("Data object not initialized properly.")
return pDataObject
@@ -180,15 +183,15 @@ def get_geometry(i):
pDataObject3 = <CFloat32VolumeData2D * >pDataObject
geom = utils.configToDict(pDataObject3.getGeometry().getConfiguration())
else:
- raise Exception("Not a known data object")
+ raise RuntimeError("Not a known data object")
return geom
cdef CProjector2D * getProjector(i) except NULL:
cdef CProjector2D * proj = manProj.get(i)
if proj == NULL:
- raise Exception("Projector not initialized.")
+ raise RuntimeError("Projector not initialized.")
if not proj.isInitialized():
- raise Exception("Projector not initialized.")
+ raise RuntimeError("Projector not initialized.")
return proj
def check_compatible(i, proj_id):
@@ -203,7 +206,7 @@ def check_compatible(i, proj_id):
pDataObject3 = <CFloat32VolumeData2D * >pDataObject
return pDataObject3.getGeometry().isEqual(proj.getVolumeGeometry())
else:
- raise Exception("Not a known data object")
+ raise RuntimeError("Not a known data object")
def change_geometry(i, geom):
cdef Config *cfg
@@ -227,12 +230,14 @@ def change_geometry(i, geom):
if not ppGeometry.initialize(cfg[0]):
del cfg
del ppGeometry
- raise Exception('Geometry class not initialized.')
- if (ppGeometry.getDetectorCount() != pDataObject2.getDetectorCount() or ppGeometry.getProjectionAngleCount() != pDataObject2.getAngleCount()):
+ raise RuntimeError('Geometry class not initialized.')
+ geom_shape = (ppGeometry.getProjectionAngleCount(), ppGeometry.getDetectorCount())
+ obj_shape = (pDataObject2.getAngleCount(), pDataObject2.getDetectorCount())
+ if geom_shape != obj_shape:
del ppGeometry
del cfg
- raise Exception(
- "The dimensions of the data do not match those specified in the geometry.")
+ raise ValueError(
+ "The dimensions of the data do not match those specified in the geometry: {} != {}", obj_shape, geom_shape)
pDataObject2.changeGeometry(ppGeometry)
del ppGeometry
del cfg
@@ -243,17 +248,19 @@ def change_geometry(i, geom):
if not pGeometry.initialize(cfg[0]):
del cfg
del pGeometry
- raise Exception('Geometry class not initialized.')
- if (pGeometry.getGridColCount() != pDataObject3.getWidth() or pGeometry.getGridRowCount() != pDataObject3.getHeight()):
+ raise RuntimeError('Geometry class not initialized.')
+ geom_shape = (pGeometry.getGridRowCount(), pGeometry.getGridColCount())
+ obj_shape = (pDataObject3.getHeight(), pDataObject3.getWidth())
+ if geom_shape != obj_shape:
del cfg
del pGeometry
- raise Exception(
- 'The dimensions of the data do not match those specified in the geometry.')
+ raise ValueError(
+ "The dimensions of the data do not match those specified in the geometry: {} != {}", obj_shape, geom_shape)
pDataObject3.changeGeometry(pGeometry)
del cfg
del pGeometry
else:
- raise Exception("Not a known data object")
+ raise RuntimeError("Not a known data object")
@cython.boundscheck(False)
@cython.wraparound(False)
@@ -274,7 +281,7 @@ def get_shared(i):
def get_single(i):
- raise Exception("Not yet implemented")
+ raise NotImplementedError("Not yet implemented")
def info():
diff --git a/python/astra/data3d.py b/python/astra/data3d.py
index a825700..ecb99d0 100644
--- a/python/astra/data3d.py
+++ b/python/astra/data3d.py
@@ -55,11 +55,12 @@ def link(datatype, geometry, data):
"""
if not isinstance(data,np.ndarray) and not isinstance(data,GPULink):
- raise ValueError("Input should be a numpy array")
- if not isinstance(data,GPULink) and not data.dtype==np.float32:
- raise ValueError("Numpy array should be float32")
- if not isinstance(data,GPULink) and not (data.flags['C_CONTIGUOUS'] and data.flags['ALIGNED']):
- raise ValueError("Numpy array should be C_CONTIGUOUS and ALIGNED")
+ raise TypeError("Input should be a numpy ndarray or GPULink object")
+ if isinstance(data, np.ndarray):
+ if data.dtype != np.float32:
+ raise ValueError("Numpy array should be float32")
+ if not (data.flags['C_CONTIGUOUS'] and data.flags['ALIGNED']):
+ raise ValueError("Numpy array should be C_CONTIGUOUS and ALIGNED")
return d.create(datatype,geometry,data,True)
diff --git a/python/astra/data3d_c.pyx b/python/astra/data3d_c.pyx
index 73e75b9..78ed620 100644
--- a/python/astra/data3d_c.pyx
+++ b/python/astra/data3d_c.pyx
@@ -77,15 +77,15 @@ def create(datatype,geometry,data=None, link=False):
cdef MemHandle3D hnd
if link:
+ geom_shape = geom_size(geometry)
if isinstance(data, np.ndarray):
- if data.shape != geom_size(geometry):
- raise Exception("The dimensions of the data do not match those specified in the geometry.")
+ data_shape = data.shape
elif isinstance(data, GPULink):
- s = geom_size(geometry)
- if geom_size(geometry) != ( data.z, data.y, data.x ):
- raise Exception("The dimensions of the data do not match those specified in the geometry.")
+ data_shape = ( data.z, data.y, data.x )
else:
raise TypeError("data should be a numpy.ndarray or a GPULink object")
+ if geom_shape != data_shape:
+ raise ValueError("The dimensions of the data do not match those specified in the geometry: {} != {}".format(data_shape, geom_shape))
if datatype == '-vol':
cfg = utils.dictToConfig(six.b('VolumeGeometry'), geometry)
@@ -93,7 +93,7 @@ def create(datatype,geometry,data=None, link=False):
if not pGeometry.initialize(cfg[0]):
del cfg
del pGeometry
- raise Exception('Geometry class not initialized.')
+ raise RuntimeError('Geometry class not initialized.')
if link:
if isinstance(data, np.ndarray):
pCustom = <CFloat32CustomMemory*> new CFloat32CustomPython(data)
@@ -123,12 +123,12 @@ def create(datatype,geometry,data=None, link=False):
elif (tpe == "cone_vec"):
ppGeometry = <CProjectionGeometry3D*> new CConeVecProjectionGeometry3D();
else:
- raise Exception("Invalid geometry type.")
+ raise ValueError("Invalid geometry type.")
if not ppGeometry.initialize(cfg[0]):
del cfg
del ppGeometry
- raise Exception('Geometry class not initialized.')
+ raise RuntimeError('Geometry class not initialized.')
if link:
if isinstance(data, np.ndarray):
pCustom = <CFloat32CustomMemory*> new CFloat32CustomPython(data)
@@ -147,11 +147,11 @@ def create(datatype,geometry,data=None, link=False):
del ppGeometry
del cfg
else:
- raise Exception("Invalid datatype. Please specify '-vol' or '-proj3d'.")
+ raise ValueError("Invalid datatype. Please specify '-vol' or '-proj3d'.")
if not pDataObject3D.isInitialized():
del pDataObject3D
- raise Exception("Couldn't initialize data object.")
+ raise RuntimeError("Couldn't initialize data object.")
if not link:
fillDataObject(dynamic_cast_mem(pDataObject3D), data)
@@ -169,7 +169,7 @@ def get_geometry(i):
pDataObject3 = <CFloat32VolumeData3DMemory * >pDataObject
geom = utils.configToDict(pDataObject3.getGeometry().getConfiguration())
else:
- raise Exception("Not a known data object")
+ raise RuntimeError("Not a known data object")
return geom
def change_geometry(i, geom):
@@ -190,18 +190,18 @@ def change_geometry(i, geom):
elif (tpe == "cone_vec"):
ppGeometry = <CProjectionGeometry3D*> new CConeVecProjectionGeometry3D();
else:
- raise Exception("Invalid geometry type.")
+ raise ValueError("Invalid geometry type.")
if not ppGeometry.initialize(cfg[0]):
del cfg
del ppGeometry
- raise Exception('Geometry class not initialized.')
+ raise RuntimeError('Geometry class not initialized.')
del cfg
- if (ppGeometry.getDetectorColCount() != pDataObject2.getDetectorColCount() or \
- ppGeometry.getProjectionCount() != pDataObject2.getAngleCount() or \
- ppGeometry.getDetectorRowCount() != pDataObject2.getDetectorRowCount()):
+ geom_shape = (ppGeometry.getDetectorRowCount(), ppGeometry.getProjectionCount(), ppGeometry.getDetectorColCount())
+ obj_shape = (pDataObject2.getDetectorRowCount(), pDataObject2.getAngleCount(), pDataObject2.getDetectorColCount())
+ if geom_shape != obj_shape:
del ppGeometry
- raise Exception(
- "The dimensions of the data do not match those specified in the geometry.")
+ raise ValueError(
+ "The dimensions of the data do not match those specified in the geometry: {} != {}".format(obj_shape, geom_shape))
pDataObject2.changeGeometry(ppGeometry)
del ppGeometry
@@ -212,19 +212,19 @@ def change_geometry(i, geom):
if not pGeometry.initialize(cfg[0]):
del cfg
del pGeometry
- raise Exception('Geometry class not initialized.')
+ raise RuntimeError('Geometry class not initialized.')
del cfg
- if (pGeometry.getGridColCount() != pDataObject3.getColCount() or \
- pGeometry.getGridRowCount() != pDataObject3.getRowCount() or \
- pGeometry.getGridSliceCount() != pDataObject3.getSliceCount()):
+ geom_shape = (pGeometry.getGridSliceCount(), pGeometry.getGridRowCount(), pGeometry.getGridColCount())
+ obj_shape = (pDataObject3.getSliceCount(), pDataObject3.getRowCount(), pDataObject3.getColCount())
+ if geom_shape != obj_shape:
del pGeometry
- raise Exception(
- "The dimensions of the data do not match those specified in the geometry.")
+ raise ValueError(
+ "The dimensions of the data do not match those specified in the geometry.".format(obj_shape, geom_shape))
pDataObject3.changeGeometry(pGeometry)
del pGeometry
else:
- raise Exception("Not a known data object")
+ raise RuntimeError("Not a known data object")
cdef fillDataObject(CFloat32Data3DMemory * obj, data):
@@ -232,6 +232,10 @@ cdef fillDataObject(CFloat32Data3DMemory * obj, data):
fillDataObjectScalar(obj, 0)
else:
if isinstance(data, np.ndarray):
+ obj_shape = (obj.getDepth(), obj.getHeight(), obj.getWidth())
+ if data.shape != obj_shape:
+ raise ValueError(
+ "The dimensions of the data do not match those specified in the geometry: {} != {}".format(data.shape, obj_shape))
fillDataObjectArray(obj, np.ascontiguousarray(data,dtype=np.float32))
else:
fillDataObjectScalar(obj, np.float32(data))
@@ -244,18 +248,15 @@ cdef fillDataObjectScalar(CFloat32Data3DMemory * obj, float s):
@cython.boundscheck(False)
@cython.wraparound(False)
cdef fillDataObjectArray(CFloat32Data3DMemory * obj, float [:,:,::1] data):
- if (not data.shape[0] == obj.getDepth()) or (not data.shape[1] == obj.getHeight()) or (not data.shape[2] == obj.getWidth()):
- raise Exception(
- "The dimensions of the data do not match those specified in the geometry.")
cdef float [:,:,::1] cView = <float[:data.shape[0],:data.shape[1],:data.shape[2]]> obj.getData3D()[0][0]
cView[:] = data
cdef CFloat32Data3D * getObject(i) except NULL:
cdef CFloat32Data3D * pDataObject = man3d.get(i)
if pDataObject == NULL:
- raise Exception("Data object not found")
+ raise ValueError("Data object not found")
if not pDataObject.isInitialized():
- raise Exception("Data object not initialized properly.")
+ raise RuntimeError("Data object not initialized properly.")
return pDataObject
@cython.boundscheck(False)
@@ -278,7 +279,7 @@ def get_shared(i):
return np.PyArray_SimpleNewFromData(3,shape,np.NPY_FLOAT32,<void *>pDataObject.getData3D()[0][0])
def get_single(i):
- raise Exception("Not yet implemented")
+ raise NotImplementedError("Not yet implemented")
def store(i,data):
cdef CFloat32Data3D * pDataObject = getObject(i)
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-26 19:41:40 +0000