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+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#include "astra/ReconstructionAlgorithm2D.h"
+
+#include <boost/lexical_cast.hpp>
+
+#include "astra/AstraObjectManager.h"
+
+using namespace std;
+
+namespace astra {
+
+//----------------------------------------------------------------------------------------
+// Constructor
+CReconstructionAlgorithm2D::CReconstructionAlgorithm2D()
+{
+ _clear();
+}
+
+//----------------------------------------------------------------------------------------
+// Destructor
+CReconstructionAlgorithm2D::~CReconstructionAlgorithm2D()
+{
+ clear();
+}
+
+//---------------------------------------------------------------------------------------
+// Clear - Constructors
+void CReconstructionAlgorithm2D::_clear()
+{
+ m_pProjector = NULL;
+ m_pSinogram = NULL;
+ m_pReconstruction = NULL;
+ m_bUseMinConstraint = false;
+ m_fMinValue = 0.0f;
+ m_bUseMaxConstraint = false;
+ m_fMaxValue = 0.0f;
+ m_bUseReconstructionMask = false;
+ m_pReconstructionMask = NULL;
+ m_bUseSinogramMask = false;
+ m_pSinogramMask = NULL;
+ m_bIsInitialized = false;
+}
+
+//---------------------------------------------------------------------------------------
+// Clear - Public
+void CReconstructionAlgorithm2D::clear()
+{
+ // Nothing to delete, so just _clear()
+ _clear();
+}
+
+//---------------------------------------------------------------------------------------
+// Initialize - Config
+bool CReconstructionAlgorithm2D::initialize(const Config& _cfg)
+{
+ ASTRA_ASSERT(_cfg.self);
+ ConfigStackCheck<CAlgorithm> CC("ReconstructionAlgorithm2D", this, _cfg);
+
+ // projector
+ XMLNode* node = _cfg.self->getSingleNode("ProjectorId");
+ ASTRA_CONFIG_CHECK(node, "Reconstruction2D", "No ProjectorId tag specified.");
+ int id = boost::lexical_cast<int>(node->getContent());
+ m_pProjector = CProjector2DManager::getSingleton().get(id);
+ ASTRA_DELETE(node);
+ CC.markNodeParsed("ProjectorId");
+
+ // sinogram data
+ node = _cfg.self->getSingleNode("ProjectionDataId");
+ ASTRA_CONFIG_CHECK(node, "Reconstruction2D", "No ProjectionDataId tag specified.");
+ id = boost::lexical_cast<int>(node->getContent());
+ m_pSinogram = dynamic_cast<CFloat32ProjectionData2D*>(CData2DManager::getSingleton().get(id));
+ ASTRA_DELETE(node);
+ CC.markNodeParsed("ProjectionDataId");
+
+ // reconstruction data
+ node = _cfg.self->getSingleNode("ReconstructionDataId");
+ ASTRA_CONFIG_CHECK(node, "Reconstruction2D", "No ReconstructionDataId tag specified.");
+ id = boost::lexical_cast<int>(node->getContent());
+ m_pReconstruction = dynamic_cast<CFloat32VolumeData2D*>(CData2DManager::getSingleton().get(id));
+ ASTRA_DELETE(node);
+ CC.markNodeParsed("ReconstructionDataId");
+
+ // fixed mask
+ if (_cfg.self->hasOption("ReconstructionMaskId")) {
+ m_bUseReconstructionMask = true;
+ id = boost::lexical_cast<int>(_cfg.self->getOption("ReconstructionMaskId"));
+ m_pReconstructionMask = dynamic_cast<CFloat32VolumeData2D*>(CData2DManager::getSingleton().get(id));
+ }
+ CC.markOptionParsed("ReconstructionMaskId");
+
+ // fixed mask
+ if (_cfg.self->hasOption("SinogramMaskId")) {
+ m_bUseSinogramMask = true;
+ id = boost::lexical_cast<int>(_cfg.self->getOption("SinogramMaskId"));
+ m_pSinogramMask = dynamic_cast<CFloat32ProjectionData2D*>(CData2DManager::getSingleton().get(id));
+ }
+ CC.markOptionParsed("SinogramMaskId");
+
+ // Constraints - NEW
+ if (_cfg.self->hasOption("MinConstraint")) {
+ m_bUseMinConstraint = true;
+ m_fMinValue = _cfg.self->getOptionNumerical("MinConstraint", 0.0f);
+ CC.markOptionParsed("MinConstraint");
+ } else {
+ // Constraint - OLD
+ m_bUseMinConstraint = _cfg.self->getOptionBool("UseMinConstraint", false);
+ CC.markOptionParsed("UseMinConstraint");
+ if (m_bUseMinConstraint) {
+ m_fMinValue = _cfg.self->getOptionNumerical("MinConstraintValue", 0.0f);
+ CC.markOptionParsed("MinConstraintValue");
+ }
+ }
+ if (_cfg.self->hasOption("MaxConstraint")) {
+ m_bUseMaxConstraint = true;
+ m_fMaxValue = _cfg.self->getOptionNumerical("MaxConstraint", 255.0f);
+ CC.markOptionParsed("MaxConstraint");
+ } else {
+ // Constraint - OLD
+ m_bUseMaxConstraint = _cfg.self->getOptionBool("UseMaxConstraint", false);
+ CC.markOptionParsed("UseMaxConstraint");
+ if (m_bUseMaxConstraint) {
+ m_fMaxValue = _cfg.self->getOptionNumerical("MaxConstraintValue", 0.0f);
+ CC.markOptionParsed("MaxConstraintValue");
+ }
+ }
+
+ // return success
+ return _check();
+}
+
+//----------------------------------------------------------------------------------------
+// Initialize - C++
+bool CReconstructionAlgorithm2D::initialize(CProjector2D* _pProjector,
+ CFloat32ProjectionData2D* _pSinogram,
+ CFloat32VolumeData2D* _pReconstruction)
+{
+ m_pProjector = _pProjector;
+ m_pSinogram = _pSinogram;
+ m_pReconstruction = _pReconstruction;
+
+ // return success
+ return _check();
+}
+
+//---------------------------------------------------------------------------------------
+// Set Constraints
+void CReconstructionAlgorithm2D::setConstraints(bool _bUseMin, float32 _fMinValue, bool _bUseMax, float32 _fMaxValue)
+{
+ m_bUseMinConstraint = _bUseMin;
+ m_fMinValue = _fMinValue;
+ m_bUseMaxConstraint = _bUseMax;
+ m_fMaxValue = _fMaxValue;
+}
+
+//----------------------------------------------------------------------------------------
+// Set Fixed Reconstruction Mask
+void CReconstructionAlgorithm2D::setReconstructionMask(CFloat32VolumeData2D* _pMask, bool _bEnable)
+{
+ // TODO: check geometry matches volume
+ m_bUseReconstructionMask = _bEnable;
+ m_pReconstructionMask = _pMask;
+ if (m_pReconstructionMask == NULL) {
+ m_bUseReconstructionMask = false;
+ }
+}
+
+//----------------------------------------------------------------------------------------
+// Set Fixed Sinogram Mask
+void CReconstructionAlgorithm2D::setSinogramMask(CFloat32ProjectionData2D* _pMask, bool _bEnable)
+{
+ // TODO: check geometry matches sinogram
+ m_bUseSinogramMask = _bEnable;
+ m_pSinogramMask = _pMask;
+ if (m_pSinogramMask == NULL) {
+ m_bUseSinogramMask = false;
+ }
+}//----------------------------------------------------------------------------------------
+// Check
+bool CReconstructionAlgorithm2D::_check()
+{
+ // check pointers
+ ASTRA_CONFIG_CHECK(m_pProjector, "Reconstruction2D", "Invalid Projector Object.");
+ ASTRA_CONFIG_CHECK(m_pSinogram, "Reconstruction2D", "Invalid Projection Data Object.");
+ ASTRA_CONFIG_CHECK(m_pReconstruction, "Reconstruction2D", "Invalid Reconstruction Data Object.");
+
+ // check initializations
+ ASTRA_CONFIG_CHECK(m_pProjector->isInitialized(), "Reconstruction2D", "Projector Object Not Initialized.");
+ ASTRA_CONFIG_CHECK(m_pSinogram->isInitialized(), "Reconstruction2D", "Projection Data Object Not Initialized.");
+ ASTRA_CONFIG_CHECK(m_pReconstruction->isInitialized(), "Reconstruction2D", "Reconstruction Data Object Not Initialized.");
+
+ // check compatibility between projector and data classes
+ ASTRA_CONFIG_CHECK(m_pSinogram->getGeometry()->isEqual(m_pProjector->getProjectionGeometry()), "Reconstruction2D", "Projection Data not compatible with the specified Projector.");
+ ASTRA_CONFIG_CHECK(m_pReconstruction->getGeometry()->isEqual(m_pProjector->getVolumeGeometry()), "Reconstruction2D", "Reconstruction Data not compatible with the specified Projector.");
+
+ // success
+ return true;
+}
+
+//---------------------------------------------------------------------------------------
+// Information - All
+map<string,boost::any> CReconstructionAlgorithm2D::getInformation()
+{
+ map<string, boost::any> res;
+ res["ProjectorId"] = getInformation("ProjectorId");
+ res["ProjectionDataId"] = getInformation("ProjectionDataId");
+ res["ReconstructionDataId"] = getInformation("ReconstructionDataId");
+ res["UseMinConstraint"] = getInformation("UseMinConstraint");
+ res["MinConstraintValue"] = getInformation("MinConstraintValue");
+ res["UseMaxConstraint"] = getInformation("UseMaxConstraint");
+ res["MaxConstraintValue"] = getInformation("MaxConstraintValue");
+ res["ReconstructionMaskId"] = getInformation("ReconstructionMaskId");
+ return mergeMap<string,boost::any>(CAlgorithm::getInformation(), res);
+};
+
+//---------------------------------------------------------------------------------------
+// Information - Specific
+boost::any CReconstructionAlgorithm2D::getInformation(std::string _sIdentifier)
+{
+ if (_sIdentifier == "UseMinConstraint") { return m_bUseMinConstraint ? string("yes") : string("no"); }
+ if (_sIdentifier == "MinConstraintValue") { return m_fMinValue; }
+ if (_sIdentifier == "UseMaxConstraint") { return m_bUseMaxConstraint ? string("yes") : string("no"); }
+ if (_sIdentifier == "MaxConstraintValue") { return m_fMaxValue; }
+ if (_sIdentifier == "ProjectorId") {
+ int iIndex = CProjector2DManager::getSingleton().getIndex(m_pProjector);
+ if (iIndex != 0) return iIndex;
+ return std::string("not in manager");
+ }
+ if (_sIdentifier == "ProjectionDataId") {
+ int iIndex = CData2DManager::getSingleton().getIndex(m_pSinogram);
+ if (iIndex != 0) return iIndex;
+ return std::string("not in manager");
+ }
+ if (_sIdentifier == "ReconstructionDataId") {
+ int iIndex = CData2DManager::getSingleton().getIndex(m_pReconstruction);
+ if (iIndex != 0) return iIndex;
+ return std::string("not in manager");
+ }
+ if (_sIdentifier == "ReconstructionMaskId") {
+ if (!m_bUseReconstructionMask) return string("not used");
+ int iIndex = CData2DManager::getSingleton().getIndex(m_pReconstructionMask);
+ if (iIndex != 0) return iIndex;
+ return std::string("not in manager");
+ }
+ return CAlgorithm::getInformation(_sIdentifier);
+};
+//----------------------------------------------------------------------------------------
+
+} // namespace astra