% ----------------------------------------------------------------------- % This file is part of the ASTRA Toolbox % % Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp % 2014-2015, CWI, Amsterdam % License: Open Source under GPLv3 % Contact: astra@uantwerpen.be % Website: http://sf.net/projects/astra-toolbox % ----------------------------------------------------------------------- % This example demonstrates using the FP and BP primitives with Matlab's lsqr % solver. Calls to FP (astra_create_sino_cuda) and % BP (astra_create_backprojection_cuda) are wrapped in a function astra_wrap, % and a handle to this function is passed to lsqr. % Because in this case the inputs/outputs of FP and BP have to be vectors % instead of images (matrices), the calls require reshaping to and from vectors. function s015_fp_bp % FP/BP wrapper function function Y = astra_wrap(X,T) if strcmp(T, 'notransp') % X is passed as a vector. Reshape it into an image. [sid, s] = astra_create_sino_cuda(reshape(X,[vol_geom.GridRowCount vol_geom.GridColCount])', proj_geom, vol_geom); astra_mex_data2d('delete', sid); % now s is the sinogram. Reshape it back into a vector Y = reshape(s',[prod(size(s)) 1]); else % X is passed as a vector. Reshape it into a sinogram. v = astra_create_backprojection_cuda(reshape(X, [proj_geom.DetectorCount size(proj_geom.ProjectionAngles,2)])', proj_geom, vol_geom); % now v is the resulting volume. Reshape it back into a vector Y = reshape(v',[prod(size(v)) 1]); end end vol_geom = astra_create_vol_geom(256, 256); proj_geom = astra_create_proj_geom('parallel', 1.0, 384, linspace2(0,pi,180)); % Create a 256x256 phantom image using matlab's built-in phantom() function P = phantom(256); % Create a sinogram using the GPU. [sinogram_id, sinogram] = astra_create_sino_gpu(P, proj_geom, vol_geom); % Reshape the sinogram into a vector b = reshape(sinogram',[prod(size(sinogram)) 1]); % Call Matlab's lsqr with ASTRA FP and BP Y = lsqr(@astra_wrap,b,1e-4,25); % Reshape the result into an image Y = reshape(Y,[vol_geom.GridRowCount vol_geom.GridColCount])'; imshow(Y,[]); astra_mex_data2d('delete', sinogram_id); end