/* ----------------------------------------------------------------------- Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp 2014-2015, CWI, Amsterdam Contact: astra@uantwerpen.be Website: http://sf.net/projects/astra-toolbox This file is part of the ASTRA Toolbox. The ASTRA Toolbox is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. The ASTRA Toolbox is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with the ASTRA Toolbox. If not, see . ----------------------------------------------------------------------- $Id$ */ #ifdef ASTRA_PYTHON #include "astra/PluginAlgorithm.h" #include "astra/Logging.h" #include #include #include #include #include #include namespace astra { void logPythonError(){ if(PyErr_Occurred()){ PyObject *ptype, *pvalue, *ptraceback; PyErr_Fetch(&ptype, &pvalue, &ptraceback); PyErr_NormalizeException(&ptype, &pvalue, &ptraceback); PyObject *traceback = PyImport_ImportModule("traceback"); if(traceback!=NULL){ PyObject *exc; if(ptraceback==NULL){ exc = PyObject_CallMethod(traceback,"format_exception_only","OO",ptype, pvalue); }else{ exc = PyObject_CallMethod(traceback,"format_exception","OOO",ptype, pvalue, ptraceback); } if(exc!=NULL){ PyObject *six = PyImport_ImportModule("six"); if(six!=NULL){ PyObject *iter = PyObject_GetIter(exc); if(iter!=NULL){ PyObject *line; std::string errStr = ""; while(line = PyIter_Next(iter)){ PyObject *retb = PyObject_CallMethod(six,"b","O",line); if(retb!=NULL){ errStr += std::string(PyBytes_AsString(retb)); Py_DECREF(retb); } Py_DECREF(line); } ASTRA_ERROR("%s",errStr.c_str()); Py_DECREF(iter); } Py_DECREF(six); } Py_DECREF(exc); } Py_DECREF(traceback); } if(ptype!=NULL) Py_DECREF(ptype); if(pvalue!=NULL) Py_DECREF(pvalue); if(ptraceback!=NULL) Py_DECREF(ptraceback); } } CPluginAlgorithm::CPluginAlgorithm(PyObject* pyclass){ instance = PyObject_CallObject(pyclass, NULL); if(instance==NULL) logPythonError(); } CPluginAlgorithm::~CPluginAlgorithm(){ if(instance!=NULL){ Py_DECREF(instance); instance = NULL; } } bool CPluginAlgorithm::initialize(const Config& _cfg){ if(instance==NULL) return false; PyObject *cfgDict = XMLNode2dict(_cfg.self); PyObject *retVal = PyObject_CallMethod(instance, "astra_init", "O",cfgDict); Py_DECREF(cfgDict); if(retVal==NULL){ logPythonError(); return false; } m_bIsInitialized = true; Py_DECREF(retVal); return m_bIsInitialized; } void CPluginAlgorithm::run(int _iNrIterations){ if(instance==NULL) return; PyObject *retVal = PyObject_CallMethod(instance, "run", "i",_iNrIterations); if(retVal==NULL){ logPythonError(); return; } Py_DECREF(retVal); } void fixLapackLoading(){ // When running in Matlab, we need to force numpy // to use its internal lapack library instead of // Matlab's MKL library to avoid errors. To do this, // we set Python's dlopen flags to RTLD_NOW|RTLD_DEEPBIND // and import 'numpy.linalg.lapack_lite' here. We reset // Python's dlopen flags afterwards. PyObject *sys = PyImport_ImportModule("sys"); if(sys!=NULL){ PyObject *curFlags = PyObject_CallMethod(sys,"getdlopenflags",NULL); if(curFlags!=NULL){ PyObject *retVal = PyObject_CallMethod(sys, "setdlopenflags", "i",10); if(retVal!=NULL){ PyObject *lapack = PyImport_ImportModule("numpy.linalg.lapack_lite"); if(lapack!=NULL){ Py_DECREF(lapack); } PyObject_CallMethod(sys, "setdlopenflags", "O",curFlags); Py_DECREF(retVal); } Py_DECREF(curFlags); } Py_DECREF(sys); } } CPluginAlgorithmFactory::CPluginAlgorithmFactory(){ Py_Initialize(); #ifndef _MSC_VER if(astra::running_in_matlab) fixLapackLoading(); #endif pluginDict = PyDict_New(); inspect = PyImport_ImportModule("inspect"); six = PyImport_ImportModule("six"); } CPluginAlgorithmFactory::~CPluginAlgorithmFactory(){ if(pluginDict!=NULL){ Py_DECREF(pluginDict); } if(inspect!=NULL) Py_DECREF(inspect); if(six!=NULL) Py_DECREF(six); } PyObject * getClassFromString(std::string str){ std::vector items; boost::split(items, str, boost::is_any_of(".")); PyObject *pyclass = PyImport_ImportModule(items[0].c_str()); if(pyclass==NULL){ logPythonError(); return NULL; } PyObject *submod = pyclass; for(unsigned int i=1;i CPluginAlgorithmFactory::getRegisteredMap(){ std::map ret; PyObject *key, *value; Py_ssize_t pos = 0; while (PyDict_Next(pluginDict, &pos, &key, &value)) { PyObject *keystr = PyObject_Str(key); if(keystr!=NULL){ PyObject *valstr = PyObject_Str(value); if(valstr!=NULL){ PyObject * keyb = PyObject_CallMethod(six,"b","O",keystr); if(keyb!=NULL){ PyObject * valb = PyObject_CallMethod(six,"b","O",valstr); if(valb!=NULL){ ret[PyBytes_AsString(keyb)] = PyBytes_AsString(valb); Py_DECREF(valb); } Py_DECREF(keyb); } Py_DECREF(valstr); } Py_DECREF(keystr); } logPythonError(); } return ret; } std::string CPluginAlgorithmFactory::getHelp(std::string name){ PyObject *className = PyDict_GetItemString(pluginDict, name.c_str()); if(className==NULL){ ASTRA_ERROR("Plugin %s not found!",name.c_str()); PyErr_Clear(); return ""; } std::string ret = ""; PyObject *pyclass; if(PyBytes_Check(className)){ std::string str = std::string(PyBytes_AsString(className)); pyclass = getClassFromString(str); }else{ pyclass = className; } if(pyclass==NULL) return ""; if(inspect!=NULL && six!=NULL){ PyObject *retVal = PyObject_CallMethod(inspect,"getdoc","O",pyclass); if(retVal!=NULL){ if(retVal!=Py_None){ PyObject *retb = PyObject_CallMethod(six,"b","O",retVal); if(retb!=NULL){ ret = std::string(PyBytes_AsString(retb)); Py_DECREF(retb); } } Py_DECREF(retVal); }else{ logPythonError(); } } if(PyBytes_Check(className)){ Py_DECREF(pyclass); } return ret; } DEFINE_SINGLETON(CPluginAlgorithmFactory); #if PY_MAJOR_VERSION >= 3 PyObject * pyStringFromString(std::string str){ return PyUnicode_FromString(str.c_str()); } #else PyObject * pyStringFromString(std::string str){ return PyBytes_FromString(str.c_str()); } #endif PyObject* stringToPythonValue(std::string str){ if(str.find(";")!=std::string::npos){ std::vector rows, row; boost::split(rows, str, boost::is_any_of(";")); PyObject *mat = PyList_New(rows.size()); for(unsigned int i=0; i(row[j]))); } PyList_SetItem(mat, i, rowlist); } return mat; } if(str.find(",")!=std::string::npos){ std::vector vec; boost::split(vec, str, boost::is_any_of(",")); PyObject *veclist = PyList_New(vec.size()); for(unsigned int i=0;i(vec[i]))); } return veclist; } try{ return PyLong_FromLong(boost::lexical_cast(str)); }catch(const boost::bad_lexical_cast &){ try{ return PyFloat_FromDouble(boost::lexical_cast(str)); }catch(const boost::bad_lexical_cast &){ return pyStringFromString(str); } } } PyObject* XMLNode2dict(XMLNode node){ PyObject *dct = PyDict_New(); PyObject *opts = PyDict_New(); if(node.hasAttribute("type")){ PyObject *obj = pyStringFromString(node.getAttribute("type").c_str()); PyDict_SetItemString(dct, "type", obj); Py_DECREF(obj); } std::list nodes = node.getNodes(); std::list::iterator it = nodes.begin(); while(it!=nodes.end()){ XMLNode subnode = *it; if(subnode.getName()=="Option"){ PyObject *obj; if(subnode.hasAttribute("value")){ obj = stringToPythonValue(subnode.getAttribute("value")); }else{ obj = stringToPythonValue(subnode.getContent()); } PyDict_SetItemString(opts, subnode.getAttribute("key").c_str(), obj); Py_DECREF(obj); }else{ PyObject *obj = stringToPythonValue(subnode.getContent()); PyDict_SetItemString(dct, subnode.getName().c_str(), obj); Py_DECREF(obj); } ++it; } PyDict_SetItemString(dct, "options", opts); Py_DECREF(opts); return dct; } } #endif