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/*
-----------------------------------------------------------------------
Copyright: 2010-2016, iMinds-Vision Lab, University of Antwerp
2014-2016, CWI, Amsterdam
Contact: astra@uantwerpen.be
Website: http://www.astra-toolbox.com/
This file is part of the ASTRA Toolbox.
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
The ASTRA Toolbox is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
-----------------------------------------------------------------------
*/
#ifndef _CUDA_ASTRA_H
#define _CUDA_ASTRA_H
#include "fft.h"
#include "fbp_filters.h"
#include "dims.h"
#include "algo.h"
using astraCUDA::SFanProjection;
namespace astra {
enum Cuda2DProjectionKernel {
ker2d_default = 0
};
class CParallelProjectionGeometry2D;
class CFanFlatProjectionGeometry2D;
class CFanFlatVecProjectionGeometry2D;
class CVolumeGeometry2D;
class AstraFBP_internal;
class _AstraExport AstraFBP {
public:
// Constructor
AstraFBP();
// Destructor
~AstraFBP();
// Set the size of the reconstruction rectangle.
// Volume pixels are currently assumed to be 1x1 squares.
bool setReconstructionGeometry(unsigned int iVolWidth,
unsigned int iVolHeight,
float fPixelSize = 1.0f);
// Set the projection angles and number of detector pixels per angle.
// pfAngles must be a float array of length iProjAngles.
// fDetSize indicates the size of a detector pixel compared to a
// volume pixel edge.
//
// pfAngles will only be read from during this call.
bool setProjectionGeometry(unsigned int iProjAngles,
unsigned int iProjDets,
const float *pfAngles,
float fDetSize = 1.0f);
// Set the projection angles and number of detector pixels per angle.
// pfAngles must be a float array of length iProjAngles.
// fDetSize indicates the size of a detector pixel compared to a
// volume pixel edge.
//
// pfAngles, fanProjs will only be read from during this call.
bool setFanGeometry(unsigned int iProjAngles,
unsigned int iProjDets,
const astraCUDA::SFanProjection *fanProjs,
const float *pfAngles,
float fOriginSourceDistance,
float fOriginDetectorDistance,
float fDetSize = 1.0f,
bool bShortScan = false);
// Set linear supersampling factor for the BP.
// (The number of rays is the square of this)
//
// This may optionally be called before init().
bool setPixelSuperSampling(unsigned int iPixelSuperSampling);
// Set per-detector shifts.
//
// pfTOffsets will only be read from during this call.
bool setTOffsets(const float *pfTOffsets);
// Returns the required size of a filter in the fourier domain
// when multiplying it with the fft of the projection data.
// Its value is equal to the smallest power of two larger than
// or equal to twice the number of detectors in the spatial domain.
//
// _iDetectorCount is the number of detectors in the spatial domain.
static int calcFourierFilterSize(int _iDetectorCount);
// Sets the filter type. Some filter types require the user to supply an
// array containing the filter.
// The number of elements in a filter in the fourier domain should be equal
// to the value returned by calcFourierFilterSize().
// The following types require a filter:
//
// - FILTER_PROJECTION:
// The filter size should be equal to the output of
// calcFourierFilterSize(). The filtered sinogram is
// multiplied with the supplied filter.
//
// - FILTER_SINOGRAM:
// Same as FILTER_PROJECTION, but now the filter should contain a row for
// every projection direction.
//
// - FILTER_RPROJECTION:
// The filter should now contain one kernel (= ifft of filter), with the
// peak in the center. The filter width
// can be any value. If odd, the peak is assumed to be in the center, if
// even, it is assumed to be at floor(filter-width/2).
//
// - FILTER_RSINOGRAM
// Same as FILTER_RPROJECTION, but now the supplied filter should contain a
// row for every projection direction.
//
// A large number of other filters (FILTER_RAMLAK, FILTER_SHEPPLOGAN,
// FILTER_COSINE, FILTER_HAMMING, and FILTER_HANN)
// have a D variable, which gives the cutoff point in the frequency domain.
// Setting this value to 1.0 will include the whole filter
bool setFilter(E_FBPFILTER _eFilter,
const float * _pfHostFilter = NULL,
int _iFilterWidth = 0, float _fD = 1.0f, float _fFilterParameter = -1.0f);
// Initialize CUDA, allocate GPU buffers and
// precompute geometry-specific data.
//
// CUDA is set up to use GPU number iGPUIndex.
//
// This must be called after calling setReconstructionGeometry() and
// setProjectionGeometry().
bool init(int iGPUIndex = 0);
// Setup input sinogram for a slice.
// pfSinogram must be a float array of size iProjAngles*iSinogramPitch.
// NB: iSinogramPitch is measured in floats, not in bytes.
//
// This must be called after init(), and before iterate(). It may be
// called again after iterate()/getReconstruction() to start a new slice.
//
// pfSinogram will only be read from during this call.
bool setSinogram(const float* pfSinogram, unsigned int iSinogramPitch);
// Runs an FBP reconstruction.
// This must be called after setSinogram().
//
// run can be called before setFilter, but will then use the default Ram-Lak filter
bool run();
// Get the reconstructed slice.
// pfReconstruction must be a float array of size
// iVolHeight*iReconstructionPitch.
// NB: iReconstructionPitch is measured in floats, not in bytes.
//
// This may be called after run().
bool getReconstruction(float* pfReconstruction,
unsigned int iReconstructionPitch) const;
private:
AstraFBP_internal* pData;
};
class _AstraExport BPalgo : public astraCUDA::ReconAlgo {
public:
BPalgo();
~BPalgo();
virtual bool init();
virtual bool iterate(unsigned int iterations);
virtual float computeDiffNorm();
};
// TODO: Clean up this interface to FP
// Do a single forward projection
_AstraExport bool astraCudaFP(const float* pfVolume, float* pfSinogram,
unsigned int iVolWidth, unsigned int iVolHeight,
unsigned int iProjAngles, unsigned int iProjDets,
const float *pfAngles, const float *pfOffsets,
float fDetSize = 1.0f, unsigned int iDetSuperSampling = 1,
float fOutputScale = 1.0f, int iGPUIndex = 0);
_AstraExport bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
unsigned int iVolWidth, unsigned int iVolHeight,
unsigned int iProjAngles, unsigned int iProjDets,
const SFanProjection *pAngles,
unsigned int iDetSuperSampling = 1,
float fOutputScale = 1.0f, int iGPUIndex = 0);
_AstraExport bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
const CParallelProjectionGeometry2D* pProjGeom,
float*& pfDetectorOffsets, float*& pfProjectionAngles,
float& fDetSize, float& fOutputScale);
_AstraExport bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
const CFanFlatProjectionGeometry2D* pProjGeom,
astraCUDA::SFanProjection*& pProjs,
float& outputScale);
_AstraExport bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
const CFanFlatVecProjectionGeometry2D* pProjGeom,
astraCUDA::SFanProjection*& pProjs,
float& outputScale);
}
#endif
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