Remove unmaintained, out of date 'STANDALONE' cuda code

7 files changed, 0 insertions, 1152 deletions

diff --git a/cuda/3d/cgls3d.cu b/cuda/3d/cgls3d.cu
index 10c5f1e..4829574 100644
--- a/cuda/3d/cgls3d.cu
+++ b/cuda/3d/cgls3d.cu
@@ -33,10 +33,6 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
 #include <cstdio>
 #include <cassert>
 
-#ifdef STANDALONE
-#include "testutil.h"
-#endif
-
 namespace astraCUDA3d {
 
 CGLS::CGLS() : ReconAlgo3D()
@@ -263,161 +259,3 @@ bool doCGLS(cudaPitchedPtr& D_volumeData,
 }
 
 }
-
-#ifdef STANDALONE
-
-using namespace astraCUDA3d;
-
-int main()
-{
-	SDimensions3D dims;
-	dims.iVolX = 256;
-	dims.iVolY = 256;
-	dims.iVolZ = 256;
-	dims.iProjAngles = 100;
-	dims.iProjU = 512;
-	dims.iProjV = 512;
-	dims.iRaysPerDet = 1;
-
-	SConeProjection angle[100];
-	angle[0].fSrcX = -2905.6;
-	angle[0].fSrcY = 0;
-	angle[0].fSrcZ = 0;
-
-	angle[0].fDetSX = 694.4;
-	angle[0].fDetSY = -122.4704;
-	angle[0].fDetSZ = -122.4704;
-
-	angle[0].fDetUX = 0;
-	angle[0].fDetUY = .4784;
-	//angle[0].fDetUY = .5;
-	angle[0].fDetUZ = 0;
-
-	angle[0].fDetVX = 0;
-	angle[0].fDetVY = 0;
-	angle[0].fDetVZ = .4784;
-
-#define ROTATE0(name,i,alpha) do { angle[i].f##name##X = angle[0].f##name##X * cos(alpha) - angle[0].f##name##Y * sin(alpha); angle[i].f##name##Y = angle[0].f##name##X * sin(alpha) + angle[0].f##name##Y * cos(alpha); } while(0)
-	for (int i = 1; i < 100; ++i) {
-		angle[i] = angle[0];
-		ROTATE0(Src, i, i*2*M_PI/100);
-		ROTATE0(DetS, i, i*2*M_PI/100);
-		ROTATE0(DetU, i, i*2*M_PI/100);
-		ROTATE0(DetV, i, i*2*M_PI/100);
-	}
-#undef ROTATE0
-
-
-	cudaPitchedPtr volData = allocateVolumeData(dims);
-	cudaPitchedPtr projData = allocateProjectionData(dims);
-	zeroProjectionData(projData, dims);
-
-	float* pbuf = new float[100*512*512];
-	copyProjectionsFromDevice(pbuf, projData, dims);
-	copyProjectionsToDevice(pbuf, projData, dims);
-	delete[] pbuf;
-
-#if 0
-	float* slice = new float[256*256];
-	cudaPitchedPtr ptr;
-	ptr.ptr = slice;
-	ptr.pitch = 256*sizeof(float);
-	ptr.xsize = 256*sizeof(float);
-	ptr.ysize = 256;
-
-	for (unsigned int i = 0; i < 256; ++i) {
-		for (unsigned int y = 0; y < 256; ++y)
-			for (unsigned int x = 0; x < 256; ++x)
-				slice[y*256+x] = (i-127.5)*(i-127.5)+(y-127.5)*(y-127.5)+(x-127.5)*(x-127.5) < 4900 ? 1.0f : 0.0f;
-
-		cudaExtent extentS;
-		extentS.width = dims.iVolX*sizeof(float);
-		extentS.height = dims.iVolY;
-		extentS.depth = 1;
-		cudaPos sp = { 0, 0, 0 };
-		cudaPos dp = { 0, 0, i };
-		cudaMemcpy3DParms p;
-		p.srcArray = 0;
-		p.srcPos = sp;
-		p.srcPtr = ptr;
-		p.dstArray = 0;
-		p.dstPos = dp;
-		p.dstPtr = volData;
-		p.extent = extentS;
-		p.kind = cudaMemcpyHostToDevice;
-		cudaMemcpy3D(&p);
-	}
-	astraCUDA3d::ConeFP(volData, projData, dims, angle, 1.0f);
-
-#else
-
-	for (int i = 0; i < 100; ++i) {
-		char fname[32];
-		sprintf(fname, "Tiffs/%04d.png", 4*i);
-		unsigned int w,h;
-		float* bufp = loadImage(fname, w,h);
-
-		for (int j = 0; j < 512*512; ++j) {
-			float v = bufp[j];
-			if (v > 236.0f) v = 236.0f;
-			v = logf(236.0f / v);
-			bufp[j] = 256*v;
-		}
-
-		for (int j = 0; j < 512; ++j) {
-			cudaMemcpy(((float*)projData.ptr)+100*512*j+512*i, bufp+512*j, 512*sizeof(float), cudaMemcpyHostToDevice);
-		}
-
-		delete[] bufp;
-
-	}
-#endif
-
-#if 0
-	float* bufs = new float[100*512];
-
-	for (int i = 0; i < 512; ++i) {
-		cudaMemcpy(bufs, ((float*)projData.ptr)+100*512*i, 100*512*sizeof(float), cudaMemcpyDeviceToHost);
-
-		printf("%d %d %d\n", projData.pitch, projData.xsize, projData.ysize);
-
-		char fname[20];
-		sprintf(fname, "sino%03d.png", i);
-		saveImage(fname, 100, 512, bufs);
-	}
-
-	float* bufp = new float[512*512];
-
-	for (int i = 0; i < 100; ++i) {
-		for (int j = 0; j < 512; ++j) {
-			cudaMemcpy(bufp+512*j, ((float*)projData.ptr)+100*512*j+512*i, 512*sizeof(float), cudaMemcpyDeviceToHost);
-		}
-
-		char fname[20];
-		sprintf(fname, "proj%03d.png", i);
-		saveImage(fname, 512, 512, bufp);
-	}
-#endif
-
-	zeroVolumeData(volData, dims);
-
-	cudaPitchedPtr maskData;
-	maskData.ptr = 0;
-
-	astraCUDA3d::doCGLS(volData, projData, maskData, dims, angle, 50);
-#if 1
-	float* buf = new float[256*256];
-
-	for (int i = 0; i < 256; ++i) {
-		cudaMemcpy(buf, ((float*)volData.ptr)+256*256*i, 256*256*sizeof(float), cudaMemcpyDeviceToHost);
-
-		char fname[20];
-		sprintf(fname, "vol%03d.png", i);
-		saveImage(fname, 256, 256, buf);
-	}
-#endif
-
-	return 0;
-}
-#endif
-
diff --git a/cuda/3d/cone_bp.cu b/cuda/3d/cone_bp.cu
index 024c791..6b2c8a1 100644
--- a/cuda/3d/cone_bp.cu
+++ b/cuda/3d/cone_bp.cu
@@ -28,11 +28,6 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
 #include "astra/cuda/3d/util3d.h"
 #include "astra/cuda/3d/dims3d.h"
 
-#ifdef STANDALONE
-#include "astra/cuda/3d/cone_fp.h"
-#include "testutil.h"
-#endif
-
 #include <cstdio>
 #include <cassert>
 #include <iostream>
@@ -380,168 +375,3 @@ bool ConeBP(cudaPitchedPtr D_volumeData,
 
 
 }
-
-#ifdef STANDALONE
-int main()
-{
-	astraCUDA3d::SDimensions3D dims;
-	dims.iVolX = 512;
-	dims.iVolY = 512;
-	dims.iVolZ = 512;
-	dims.iProjAngles = 496;
-	dims.iProjU = 512;
-	dims.iProjV = 512;
-	dims.iRaysPerDetDim = 1;
-	dims.iRaysPerVoxelDim = 1;
-
-	cudaExtent extentV;
-	extentV.width = dims.iVolX*sizeof(float);
-	extentV.height = dims.iVolY;
-	extentV.depth = dims.iVolZ;
-
-	cudaPitchedPtr volData; // pitch, ptr, xsize, ysize
-
-	cudaMalloc3D(&volData, extentV);
-
-	cudaExtent extentP;
-	extentP.width = dims.iProjU*sizeof(float);
-	extentP.height = dims.iProjAngles;
-	extentP.depth = dims.iProjV;
-
-	cudaPitchedPtr projData; // pitch, ptr, xsize, ysize
-
-	cudaMalloc3D(&projData, extentP);
-	cudaMemset3D(projData, 0, extentP);
-
-#if 0
-	float* slice = new float[256*256];
-	cudaPitchedPtr ptr;
-	ptr.ptr = slice;
-	ptr.pitch = 256*sizeof(float);
-	ptr.xsize = 256*sizeof(float);
-	ptr.ysize = 256;
-
-	for (unsigned int i = 0; i < 256*256; ++i)
-		slice[i] = 1.0f;
-	for (unsigned int i = 0; i < 256; ++i) {
-		cudaExtent extentS;
-		extentS.width = dims.iVolX*sizeof(float);
-		extentS.height = dims.iVolY;
-		extentS.depth = 1;
-		cudaPos sp = { 0, 0, 0 };
-		cudaPos dp = { 0, 0, i };
-		cudaMemcpy3DParms p;
-		p.srcArray = 0;
-		p.srcPos = sp;
-		p.srcPtr = ptr;
-		p.dstArray = 0;
-		p.dstPos = dp;
-		p.dstPtr = volData;
-		p.extent = extentS;
-		p.kind = cudaMemcpyHostToDevice;
-		cudaMemcpy3D(&p);
-#if 0
-		if (i == 128) {
-			for (unsigned int j = 0; j < 256*256; ++j)
-				slice[j] = 0.0f;
-		}
-#endif 
-	}
-#endif
-
-
-	astraCUDA3d::SConeProjection angle[512];
-	angle[0].fSrcX = -5120;
-	angle[0].fSrcY = 0;
-	angle[0].fSrcZ = 0;
-
-	angle[0].fDetSX = 512;
-	angle[0].fDetSY = -256;
-	angle[0].fDetSZ = -256;
-
-	angle[0].fDetUX = 0;
-	angle[0].fDetUY = 1;
-	angle[0].fDetUZ = 0;
-
-	angle[0].fDetVX = 0;
-	angle[0].fDetVY = 0;
-	angle[0].fDetVZ = 1;
-
-#define ROTATE0(name,i,alpha) do { angle[i].f##name##X = angle[0].f##name##X * cos(alpha) - angle[0].f##name##Y * sin(alpha); angle[i].f##name##Y = angle[0].f##name##X * sin(alpha) + angle[0].f##name##Y * cos(alpha); } while(0)
-	for (int i = 1; i < 512; ++i) {
-		angle[i] = angle[0];
-		ROTATE0(Src, i, i*2*M_PI/512);
-		ROTATE0(DetS, i, i*2*M_PI/512);
-		ROTATE0(DetU, i, i*2*M_PI/512);
-		ROTATE0(DetV, i, i*2*M_PI/512);
-	}
-#undef ROTATE0
-
-#if 0
-	astraCUDA3d::ConeFP(volData, projData, dims, angle, 1.0f);
-#endif
-#if 0
-	float* bufs = new float[180*512];
-
-	for (int i = 0; i < 512; ++i) {
-		cudaMemcpy(bufs, ((float*)projData.ptr)+180*512*i, 180*512*sizeof(float), cudaMemcpyDeviceToHost);
-
-		printf("%d %d %d\n", projData.pitch, projData.xsize, projData.ysize);
-
-		char fname[20];
-		sprintf(fname, "sino%03d.png", i);
-		saveImage(fname, 180, 512, bufs);
-	}
-
-	float* bufp = new float[512*512];
-
-	for (int i = 0; i < 180; ++i) {
-		for (int j = 0; j < 512; ++j) {
-			cudaMemcpy(bufp+512*j, ((float*)projData.ptr)+180*512*j+512*i, 512*sizeof(float), cudaMemcpyDeviceToHost);
-		}
-
-		char fname[20];
-		sprintf(fname, "proj%03d.png", i);
-		saveImage(fname, 512, 512, bufp);
-	}
-#endif		
-#if 0
-	for (unsigned int i = 0; i < 256*256; ++i)
-		slice[i] = 0.0f;
-	for (unsigned int i = 0; i < 256; ++i) {
-		cudaExtent extentS;
-		extentS.width = dims.iVolX*sizeof(float);
-		extentS.height = dims.iVolY;
-		extentS.depth = 1;
-		cudaPos sp = { 0, 0, 0 };
-		cudaPos dp = { 0, 0, i };
-		cudaMemcpy3DParms p;
-		p.srcArray = 0;
-		p.srcPos = sp;
-		p.srcPtr = ptr;
-		p.dstArray = 0;
-		p.dstPos = dp;
-		p.dstPtr = volData;
-		p.extent = extentS;
-		p.kind = cudaMemcpyHostToDevice;
-		cudaMemcpy3D(&p);
-	}
-#endif
-
-	astraCUDA3d::ConeBP(volData, projData, dims, angle, 1.0f);
-#if 0
-	float* buf = new float[256*256];
-
-	for (int i = 0; i < 256; ++i) {
-		cudaMemcpy(buf, ((float*)volData.ptr)+256*256*i, 256*256*sizeof(float), cudaMemcpyDeviceToHost);
-
-		printf("%d %d %d\n", volData.pitch, volData.xsize, volData.ysize);
-
-		char fname[20];
-		sprintf(fname, "vol%03d.png", i);
-		saveImage(fname, 256, 256, buf);
-	}
-#endif
-
-}
-#endif
diff --git a/cuda/3d/cone_fp.cu b/cuda/3d/cone_fp.cu
index 418f8fd..bd607fa 100644
--- a/cuda/3d/cone_fp.cu
+++ b/cuda/3d/cone_fp.cu
@@ -28,10 +28,6 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
 #include "astra/cuda/3d/util3d.h"
 #include "astra/cuda/3d/dims3d.h"
 
-#ifdef STANDALONE
-#include "testutil.h"
-#endif
-
 #include <cstdio>
 #include <cassert>
 #include <iostream>
@@ -498,105 +494,3 @@ bool ConeFP(cudaPitchedPtr D_volumeData,
 
 
 }
-
-#ifdef STANDALONE
-int main()
-{
-	SDimensions3D dims;
-	dims.iVolX = 256;
-	dims.iVolY = 256;
-	dims.iVolZ = 256;
-	dims.iProjAngles = 32;
-	dims.iProjU = 512;
-	dims.iProjV = 512;
-	dims.iRaysPerDet = 1;
-
-	cudaExtent extentV;
-	extentV.width = dims.iVolX*sizeof(float);
-	extentV.height = dims.iVolY;
-	extentV.depth = dims.iVolZ;
-
-	cudaPitchedPtr volData; // pitch, ptr, xsize, ysize
-
-	cudaMalloc3D(&volData, extentV);
-
-	cudaExtent extentP;
-	extentP.width = dims.iProjU*sizeof(float);
-	extentP.height = dims.iProjV;
-	extentP.depth = dims.iProjAngles;
-
-	cudaPitchedPtr projData; // pitch, ptr, xsize, ysize
-
-	cudaMalloc3D(&projData, extentP);
-	cudaMemset3D(projData, 0, extentP);
-
-	float* slice = new float[256*256];
-	cudaPitchedPtr ptr;
-	ptr.ptr = slice;
-	ptr.pitch = 256*sizeof(float);
-	ptr.xsize = 256*sizeof(float);
-	ptr.ysize = 256;
-
-	for (unsigned int i = 0; i < 256*256; ++i)
-		slice[i] = 1.0f;
-	for (unsigned int i = 0; i < 256; ++i) {
-		cudaExtent extentS;
-		extentS.width = dims.iVolX*sizeof(float);
-		extentS.height = dims.iVolY;
-		extentS.depth = 1;
-		cudaPos sp = { 0, 0, 0 };
-		cudaPos dp = { 0, 0, i };
-		cudaMemcpy3DParms p;
-		p.srcArray = 0;
-		p.srcPos = sp;
-		p.srcPtr = ptr;
-		p.dstArray = 0;
-		p.dstPos = dp;
-		p.dstPtr = volData;
-		p.extent = extentS;
-		p.kind = cudaMemcpyHostToDevice;
-		cudaError err = cudaMemcpy3D(&p);
-		assert(!err);
-	}
-
-
-	SConeProjection angle[32];
-	angle[0].fSrcX = -1536;
-	angle[0].fSrcY = 0;
-	angle[0].fSrcZ = 200;
-
-	angle[0].fDetSX = 512;
-	angle[0].fDetSY = -256;
-	angle[0].fDetSZ = -256;
-
-	angle[0].fDetUX = 0;
-	angle[0].fDetUY = 1;
-	angle[0].fDetUZ = 0;
-
-	angle[0].fDetVX = 0;
-	angle[0].fDetVY = 0;
-	angle[0].fDetVZ = 1;
-
-#define ROTATE0(name,i,alpha) do { angle[i].f##name##X = angle[0].f##name##X * cos(alpha) - angle[0].f##name##Y * sin(alpha); angle[i].f##name##Y = angle[0].f##name##X * sin(alpha) + angle[0].f##name##Y * cos(alpha); } while(0)
-	for (int i = 1; i < 32; ++i) {
-		angle[i] = angle[0];
-		ROTATE0(Src, i, i*1*M_PI/180);
-		ROTATE0(DetS, i, i*1*M_PI/180);
-		ROTATE0(DetU, i, i*1*M_PI/180);
-		ROTATE0(DetV, i, i*1*M_PI/180);
-	}
-#undef ROTATE0
-
-	astraCUDA3d::ConeFP(volData, projData, dims, angle, 1.0f);
-
-	float* buf = new float[512*512];
-
-	cudaMemcpy(buf, ((float*)projData.ptr)+512*512*8, 512*512*sizeof(float), cudaMemcpyDeviceToHost);
-
-	printf("%d %d %d\n", projData.pitch, projData.xsize, projData.ysize);
-
-	saveImage("proj.png", 512, 512, buf);
-	
-
-}
-#endif
diff --git a/cuda/3d/fdk.cu b/cuda/3d/fdk.cu
index af95b6b..456694f 100644
--- a/cuda/3d/fdk.cu
+++ b/cuda/3d/fdk.cu
@@ -32,11 +32,6 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
 
 #include "astra/cuda/2d/fft.h"
 
-#ifdef STANDALONE
-#include "astra/cuda/3d/cone_fp.h"
-#include "testutil.h"
-#endif
-
 #include "astra/Logging.h"
 
 #include <cstdio>
@@ -377,220 +372,3 @@ bool FDK(cudaPitchedPtr D_volumeData,
 
 
 }
-
-#ifdef STANDALONE
-void dumpVolume(const char* filespec, const cudaPitchedPtr& data, const SDimensions3D& dims, float fMin, float fMax)
-{
-	float* buf = new float[dims.iVolX*dims.iVolY];
-	unsigned int pitch = data.pitch / sizeof(float);
-
-	for (int i = 0; i < dims.iVolZ; ++i) {
-		cudaMemcpy2D(buf, dims.iVolX*sizeof(float), ((float*)data.ptr)+pitch*dims.iVolY*i, data.pitch, dims.iVolX*sizeof(float), dims.iVolY, cudaMemcpyDeviceToHost);
-
-		char fname[512];
-		sprintf(fname, filespec, dims.iVolZ-i-1);
-		saveImage(fname, dims.iVolY, dims.iVolX, buf, fMin, fMax);
-	}
-}
-
-void dumpSinograms(const char* filespec, const cudaPitchedPtr& data, const SDimensions3D& dims, float fMin, float fMax)
-{
-	float* bufs = new float[dims.iProjAngles*dims.iProjU];
-	unsigned int pitch = data.pitch / sizeof(float);
-
-	for (int i = 0; i < dims.iProjV; ++i) {
-		cudaMemcpy2D(bufs, dims.iProjU*sizeof(float), ((float*)data.ptr)+pitch*dims.iProjAngles*i, data.pitch, dims.iProjU*sizeof(float), dims.iProjAngles, cudaMemcpyDeviceToHost);
-
-		char fname[512];
-		sprintf(fname, filespec, i);
-		saveImage(fname, dims.iProjAngles, dims.iProjU, bufs, fMin, fMax);
-	}
-}
-
-void dumpProjections(const char* filespec, const cudaPitchedPtr& data, const SDimensions3D& dims, float fMin, float fMax)
-{
-	float* bufp = new float[dims.iProjV*dims.iProjU];
-	unsigned int pitch = data.pitch / sizeof(float);
-
-	for (int i = 0; i < dims.iProjAngles; ++i) {
-		for (int j = 0; j < dims.iProjV; ++j) {
-			cudaMemcpy(bufp+dims.iProjU*j, ((float*)data.ptr)+pitch*dims.iProjAngles*j+pitch*i, dims.iProjU*sizeof(float), cudaMemcpyDeviceToHost);
-		}
-
-		char fname[512];
-		sprintf(fname, filespec, i);
-		saveImage(fname, dims.iProjV, dims.iProjU, bufp, fMin, fMax);
-	}
-}
-
-
-
-
-int main()
-{
-#if 0
-	SDimensions3D dims;
-	dims.iVolX = 512;
-	dims.iVolY = 512;
-	dims.iVolZ = 512;
-	dims.iProjAngles = 180;
-	dims.iProjU = 1024;
-	dims.iProjV = 1024;
-	dims.iRaysPerDet = 1;
-
-	cudaExtent extentV;
-	extentV.width = dims.iVolX*sizeof(float);
-	extentV.height = dims.iVolY;
-	extentV.depth = dims.iVolZ;
-
-	cudaPitchedPtr volData; // pitch, ptr, xsize, ysize
-
-	cudaMalloc3D(&volData, extentV);
-
-	cudaExtent extentP;
-	extentP.width = dims.iProjU*sizeof(float);
-	extentP.height = dims.iProjAngles;
-	extentP.depth = dims.iProjV;
-
-	cudaPitchedPtr projData; // pitch, ptr, xsize, ysize
-
-	cudaMalloc3D(&projData, extentP);
-	cudaMemset3D(projData, 0, extentP);
-
-#if 0
-	float* slice = new float[256*256];
-	cudaPitchedPtr ptr;
-	ptr.ptr = slice;
-	ptr.pitch = 256*sizeof(float);
-	ptr.xsize = 256*sizeof(float);
-	ptr.ysize = 256;
-
-	for (unsigned int i = 0; i < 256*256; ++i)
-		slice[i] = 1.0f;
-	for (unsigned int i = 0; i < 256; ++i) {
-		cudaExtent extentS;
-		extentS.width = dims.iVolX*sizeof(float);
-		extentS.height = dims.iVolY;
-		extentS.depth = 1;
-		cudaPos sp = { 0, 0, 0 };
-		cudaPos dp = { 0, 0, i };
-		cudaMemcpy3DParms p;
-		p.srcArray = 0;
-		p.srcPos = sp;
-		p.srcPtr = ptr;
-		p.dstArray = 0;
-		p.dstPos = dp;
-		p.dstPtr = volData;
-		p.extent = extentS;
-		p.kind = cudaMemcpyHostToDevice;
-		cudaMemcpy3D(&p);
-#if 0
-		if (i == 128) {
-			for (unsigned int j = 0; j < 256*256; ++j)
-				slice[j] = 0.0f;
-		}
-#endif 
-	}
-#endif
-
-	SConeProjection angle[180];
-	angle[0].fSrcX = -1536;
-	angle[0].fSrcY = 0;
-	angle[0].fSrcZ = 0;
-
-	angle[0].fDetSX = 1024;
-	angle[0].fDetSY = -512;
-	angle[0].fDetSZ = 512;
-
-	angle[0].fDetUX = 0;
-	angle[0].fDetUY = 1;
-	angle[0].fDetUZ = 0;
-
-	angle[0].fDetVX = 0;
-	angle[0].fDetVY = 0;
-	angle[0].fDetVZ = -1;
-
-#define ROTATE0(name,i,alpha) do { angle[i].f##name##X = angle[0].f##name##X * cos(alpha) - angle[0].f##name##Y * sin(alpha); angle[i].f##name##Y = angle[0].f##name##X * sin(alpha) + angle[0].f##name##Y * cos(alpha); } while(0)
-	for (int i = 1; i < 180; ++i) {
-		angle[i] = angle[0];
-		ROTATE0(Src, i, i*2*M_PI/180);
-		ROTATE0(DetS, i, i*2*M_PI/180);
-		ROTATE0(DetU, i, i*2*M_PI/180);
-		ROTATE0(DetV, i, i*2*M_PI/180);
-	}
-#undef ROTATE0
-
-	astraCUDA3d::ConeFP(volData, projData, dims, angle, 1.0f);
-
-	//dumpSinograms("sino%03d.png", projData, dims, 0, 512);
-	//dumpProjections("proj%03d.png", projData, dims, 0, 512);
-
-	astraCUDA3d::zeroVolumeData(volData, dims);
-
-	float* angles = new float[dims.iProjAngles];
-	for (int i = 0; i < 180; ++i)
-		angles[i] = i*2*M_PI/180;
-
-	astraCUDA3d::FDK(volData, projData, 1536, 512, 0, 0, dims, angles);
-
-	dumpVolume("vol%03d.png", volData, dims, -20, 100);
-
-
-#else
-
-	SDimensions3D dims;
-	dims.iVolX = 1000;
-	dims.iVolY = 999;
-	dims.iVolZ = 500;
-	dims.iProjAngles = 376;
-	dims.iProjU = 1024;
-	dims.iProjV = 524;
-	dims.iRaysPerDet = 1;
-
-	float* angles = new float[dims.iProjAngles];
-	for (int i = 0; i < dims.iProjAngles; ++i)
-		angles[i] = -i*(M_PI)/360;
-
-	cudaPitchedPtr volData = astraCUDA3d::allocateVolumeData(dims);
-	cudaPitchedPtr projData = astraCUDA3d::allocateProjectionData(dims);
-	astraCUDA3d::zeroProjectionData(projData, dims);
-	astraCUDA3d::zeroVolumeData(volData, dims);
-
-	timeval t;
-	tic(t);
-
-	for (int i = 0; i < dims.iProjAngles; ++i) {
-		char fname[256];
-		sprintf(fname, "/home/wpalenst/tmp/Elke/proj%04d.png", i);
-		unsigned int w,h;
-		float* bufp = loadImage(fname, w,h);
-
-		int pitch = projData.pitch / sizeof(float);
-		for (int j = 0; j < dims.iProjV; ++j) {
-			cudaMemcpy(((float*)projData.ptr)+dims.iProjAngles*pitch*j+pitch*i, bufp+dims.iProjU*j, dims.iProjU*sizeof(float), cudaMemcpyHostToDevice);
-		}
-
-		delete[] bufp;
-	}
-	printf("Load time: %f\n", toc(t));
-
-	//dumpSinograms("sino%03d.png", projData, dims, -8.0f, 256.0f);
-	//astraCUDA3d::FDK(volData, projData, 7350, 62355, 0, 10, dims, angles);
-	//astraCUDA3d::FDK(volData, projData, 7350, -380, 0, 10, dims, angles);
-
-	tic(t);
-
-	astraCUDA3d::FDK(volData, projData, 7383.29867, 0, 0, 10, dims, angles);
-
-	printf("FDK time: %f\n", toc(t));
-	tic(t);
-
-	dumpVolume("vol%03d.png", volData, dims, -65.9f, 200.0f);
-	//dumpVolume("vol%03d.png", volData, dims, 0.0f, 256.0f);
-	printf("Save time: %f\n", toc(t));
-
-#endif
-
-
-}
-#endif
diff --git a/cuda/3d/par3d_bp.cu b/cuda/3d/par3d_bp.cu
index 3673fa8..602f209 100644
--- a/cuda/3d/par3d_bp.cu
+++ b/cuda/3d/par3d_bp.cu
@@ -28,11 +28,6 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
 #include "astra/cuda/3d/util3d.h"
 #include "astra/cuda/3d/dims3d.h"
 
-#ifdef STANDALONE
-#include "astra/cuda/3d/par3d_fp.h"
-#include "testutil.h"
-#endif
-
 #include <cstdio>
 #include <cassert>
 #include <iostream>
@@ -317,161 +312,3 @@ bool Par3DBP(cudaPitchedPtr D_volumeData,
 
 
 }
-
-#ifdef STANDALONE
-int main()
-{
-	SDimensions3D dims;
-	dims.iVolX = 256;
-	dims.iVolY = 256;
-	dims.iVolZ = 256;
-	dims.iProjAngles = 180;
-	dims.iProjU = 512;
-	dims.iProjV = 512;
-	dims.iRaysPerDet = 1;
-
-	cudaExtent extentV;
-	extentV.width = dims.iVolX*sizeof(float);
-	extentV.height = dims.iVolY;
-	extentV.depth = dims.iVolZ;
-
-	cudaPitchedPtr volData; // pitch, ptr, xsize, ysize
-
-	cudaMalloc3D(&volData, extentV);
-
-	cudaExtent extentP;
-	extentP.width = dims.iProjU*sizeof(float);
-	extentP.height = dims.iProjAngles;
-	extentP.depth = dims.iProjV;
-
-	cudaPitchedPtr projData; // pitch, ptr, xsize, ysize
-
-	cudaMalloc3D(&projData, extentP);
-	cudaMemset3D(projData, 0, extentP);
-
-	float* slice = new float[256*256];
-	cudaPitchedPtr ptr;
-	ptr.ptr = slice;
-	ptr.pitch = 256*sizeof(float);
-	ptr.xsize = 256*sizeof(float);
-	ptr.ysize = 256;
-
-	for (unsigned int i = 0; i < 256*256; ++i)
-		slice[i] = 1.0f;
-	for (unsigned int i = 0; i < 256; ++i) {
-		cudaExtent extentS;
-		extentS.width = dims.iVolX*sizeof(float);
-		extentS.height = dims.iVolY;
-		extentS.depth = 1;
-		cudaPos sp = { 0, 0, 0 };
-		cudaPos dp = { 0, 0, i };
-		cudaMemcpy3DParms p;
-		p.srcArray = 0;
-		p.srcPos = sp;
-		p.srcPtr = ptr;
-		p.dstArray = 0;
-		p.dstPos = dp;
-		p.dstPtr = volData;
-		p.extent = extentS;
-		p.kind = cudaMemcpyHostToDevice;
-		cudaMemcpy3D(&p);
-#if 0
-		if (i == 128) {
-			for (unsigned int j = 0; j < 256*256; ++j)
-				slice[j] = 0.0f;
-		}
-#endif 
-	}
-
-
-	SPar3DProjection angle[180];
-	angle[0].fRayX = 1;
-	angle[0].fRayY = 0;
-	angle[0].fRayZ = 0;
-
-	angle[0].fDetSX = 512;
-	angle[0].fDetSY = -256;
-	angle[0].fDetSZ = -256;
-
-	angle[0].fDetUX = 0;
-	angle[0].fDetUY = 1;
-	angle[0].fDetUZ = 0;
-
-	angle[0].fDetVX = 0;
-	angle[0].fDetVY = 0;
-	angle[0].fDetVZ = 1;
-
-#define ROTATE0(name,i,alpha) do { angle[i].f##name##X = angle[0].f##name##X * cos(alpha) - angle[0].f##name##Y * sin(alpha); angle[i].f##name##Y = angle[0].f##name##X * sin(alpha) + angle[0].f##name##Y * cos(alpha); } while(0)
-	for (int i = 1; i < 180; ++i) {
-		angle[i] = angle[0];
-		ROTATE0(Ray, i, i*2*M_PI/180);
-		ROTATE0(DetS, i, i*2*M_PI/180);
-		ROTATE0(DetU, i, i*2*M_PI/180);
-		ROTATE0(DetV, i, i*2*M_PI/180);
-	}
-#undef ROTATE0
-
-	astraCUDA3d::Par3DFP(volData, projData, dims, angle, 1.0f);
-#if 1
-	float* bufs = new float[180*512];
-
-	for (int i = 0; i < 512; ++i) {
-		cudaMemcpy(bufs, ((float*)projData.ptr)+180*512*i, 180*512*sizeof(float), cudaMemcpyDeviceToHost);
-
-		printf("%d %d %d\n", projData.pitch, projData.xsize, projData.ysize);
-
-		char fname[20];
-		sprintf(fname, "sino%03d.png", i);
-		saveImage(fname, 180, 512, bufs, 0, 512);
-	}
-
-	float* bufp = new float[512*512];
-
-	for (int i = 0; i < 180; ++i) {
-		for (int j = 0; j < 512; ++j) {
-			cudaMemcpy(bufp+512*j, ((float*)projData.ptr)+180*512*j+512*i, 512*sizeof(float), cudaMemcpyDeviceToHost);
-		}
-
-		char fname[20];
-		sprintf(fname, "proj%03d.png", i);
-		saveImage(fname, 512, 512, bufp, 0, 512);
-	}
-#endif		
-	for (unsigned int i = 0; i < 256*256; ++i)
-		slice[i] = 0.0f;
-	for (unsigned int i = 0; i < 256; ++i) {
-		cudaExtent extentS;
-		extentS.width = dims.iVolX*sizeof(float);
-		extentS.height = dims.iVolY;
-		extentS.depth = 1;
-		cudaPos sp = { 0, 0, 0 };
-		cudaPos dp = { 0, 0, i };
-		cudaMemcpy3DParms p;
-		p.srcArray = 0;
-		p.srcPos = sp;
-		p.srcPtr = ptr;
-		p.dstArray = 0;
-		p.dstPos = dp;
-		p.dstPtr = volData;
-		p.extent = extentS;
-		p.kind = cudaMemcpyHostToDevice;
-		cudaMemcpy3D(&p);
-	}
-
-	astraCUDA3d::Par3DBP(volData, projData, dims, angle, 1.0f);
-#if 1
-	float* buf = new float[256*256];
-
-	for (int i = 0; i < 256; ++i) {
-		cudaMemcpy(buf, ((float*)volData.ptr)+256*256*i, 256*256*sizeof(float), cudaMemcpyDeviceToHost);
-
-		printf("%d %d %d\n", volData.pitch, volData.xsize, volData.ysize);
-
-		char fname[20];
-		sprintf(fname, "vol%03d.png", i);
-		saveImage(fname, 256, 256, buf, 0, 60000);
-	}
-#endif
-
-}
-#endif
diff --git a/cuda/3d/par3d_fp.cu b/cuda/3d/par3d_fp.cu
index 515b1ba..0a4a5cc 100644
--- a/cuda/3d/par3d_fp.cu
+++ b/cuda/3d/par3d_fp.cu
@@ -28,11 +28,6 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
 #include "astra/cuda/3d/util3d.h"
 #include "astra/cuda/3d/dims3d.h"
 
-#ifdef STANDALONE
-#include "testutil.h"
-#endif
-
-
 #include <cstdio>
 #include <cassert>
 #include <iostream>
@@ -751,166 +746,3 @@ bool Par3DFP_SumSqW(cudaPitchedPtr D_volumeData,
 
 
 }
-
-#ifdef STANDALONE
-
-using namespace astraCUDA3d;
-
-int main()
-{
-	cudaSetDevice(1);
-
-
-	SDimensions3D dims;
-	dims.iVolX = 500;
-	dims.iVolY = 500;
-	dims.iVolZ = 81;
-	dims.iProjAngles = 241;
-	dims.iProjU = 600;
-	dims.iProjV = 100;
-	dims.iRaysPerDet = 1;
-
-	SPar3DProjection base;
-	base.fRayX = 1.0f;
-	base.fRayY = 0.0f;
-	base.fRayZ = 0.1f;
-
-	base.fDetSX = 0.0f;
-	base.fDetSY = -300.0f;
-	base.fDetSZ = -50.0f;
-
-	base.fDetUX = 0.0f;
-	base.fDetUY = 1.0f;
-	base.fDetUZ = 0.0f;
-
-	base.fDetVX = 0.0f;
-	base.fDetVY = 0.0f;
-	base.fDetVZ = 1.0f;
-
-	SPar3DProjection angle[dims.iProjAngles];
-
-	cudaPitchedPtr volData; // pitch, ptr, xsize, ysize
-
-	volData = allocateVolumeData(dims);
-
-	cudaPitchedPtr projData; // pitch, ptr, xsize, ysize
-
-	projData = allocateProjectionData(dims);
-
-	unsigned int ix = 500,iy = 500;
-
-	float* buf = new float[dims.iProjU*dims.iProjV];
-
-	float* slice = new float[dims.iVolX*dims.iVolY];
-	for (int i = 0; i < dims.iVolX*dims.iVolY; ++i)
-		slice[i] = 1.0f;
-
-	for (unsigned int a = 0; a < 241; a += dims.iProjAngles) {
-
-		zeroProjectionData(projData, dims);
-
-		for (int y = 0; y < iy; y += dims.iVolY) {
-			for (int x = 0; x < ix; x += dims.iVolX) { 
-
-				timeval st;
-				tic(st);
-
-				for (int z = 0; z < dims.iVolZ; ++z) {
-//					char sfn[256];
-//					sprintf(sfn, "/home/wpalenst/projects/cone_simulation/phantom_4096/mouse_fem_phantom_%04d.png", 30+z);
-//					float* slice = loadSubImage(sfn, x, y, dims.iVolX, dims.iVolY);
-
-					cudaPitchedPtr ptr;
-					ptr.ptr = slice;
-					ptr.pitch = dims.iVolX*sizeof(float);
-					ptr.xsize = dims.iVolX*sizeof(float);
-					ptr.ysize = dims.iVolY;
-					cudaExtent extentS;
-					extentS.width = dims.iVolX*sizeof(float);
-					extentS.height = dims.iVolY;
-					extentS.depth = 1;
-
-					cudaPos sp = { 0, 0, 0 };
-					cudaPos dp = { 0, 0, z };
-					cudaMemcpy3DParms p;
-					p.srcArray = 0;
-					p.srcPos = sp;
-					p.srcPtr = ptr;
-					p.dstArray = 0;
-					p.dstPos = dp;
-					p.dstPtr = volData;
-					p.extent = extentS;
-					p.kind = cudaMemcpyHostToDevice;
-					cudaError err = cudaMemcpy3D(&p);
-					assert(!err);
-//					delete[] slice;
-				}
-
-				printf("Load: %f\n", toc(st));
-
-#if 0
-
-	cudaPos zp = { 0, 0, 0 };
-
-	cudaPitchedPtr t;
-	t.ptr = new float[1024*1024];
-	t.pitch = 1024*4;
-	t.xsize = 1024*4;
-	t.ysize = 1024;
-
-	cudaMemcpy3DParms p;
-	p.srcArray = 0;
-	p.srcPos = zp;
-	p.srcPtr = volData;
-	p.extent = extentS;
-	p.dstArray = 0;
-	p.dstPtr = t;
-	p.dstPos = zp;
-	p.kind = cudaMemcpyDeviceToHost;
-	cudaError err = cudaMemcpy3D(&p);
-	assert(!err);
-
-	char fn[32];
-	sprintf(fn, "t%d%d.png", x / dims.iVolX, y / dims.iVolY);
-	saveImage(fn, 1024, 1024, (float*)t.ptr);
-	saveImage("s.png", 4096, 4096, slice);
-	delete[] (float*)t.ptr;
-#endif
-
-
-#define ROTATE0(name,i,alpha) do { angle[i].f##name##X = base.f##name##X * cos(alpha) - base.f##name##Y * sin(alpha); angle[i].f##name##Y = base.f##name##X * sin(alpha) + base.f##name##Y * cos(alpha); angle[i].f##name##Z = base.f##name##Z; } while(0)
-#define SHIFT(name,i,x,y) do { angle[i].f##name##X += x; angle[i].f##name##Y += y; } while(0)
-				for (int i = 0; i < dims.iProjAngles; ++i) {
-					ROTATE0(Ray, i, (a+i)*.8*M_PI/180);
-					ROTATE0(DetS, i, (a+i)*.8*M_PI/180);
-					ROTATE0(DetU, i, (a+i)*.8*M_PI/180);
-					ROTATE0(DetV, i, (a+i)*.8*M_PI/180);
-
-
-//					SHIFT(Src, i, (-x+1536), (-y+1536));
-//					SHIFT(DetS, i, (-x+1536), (-y+1536));
-				}
-#undef ROTATE0
-#undef SHIFT
-				tic(st);
-
-				astraCUDA3d::Par3DFP(volData, projData, dims, angle, 1.0f);
-
-				printf("FP: %f\n", toc(st));
-
-			}
-		}
-		for (unsigned int aa = 0; aa < dims.iProjAngles; ++aa) {
-			for (unsigned int v = 0; v < dims.iProjV; ++v)
-				cudaMemcpy(buf+v*dims.iProjU, ((float*)projData.ptr)+(v*dims.iProjAngles+aa)*(projData.pitch/sizeof(float)), dims.iProjU*sizeof(float), cudaMemcpyDeviceToHost);
-
-			char fname[32];
-			sprintf(fname, "proj%03d.png", a+aa);
-			saveImage(fname, dims.iProjV, dims.iProjU, buf, 0.0f, 1000.0f);
-		}
-	}
-
-	delete[] buf;
-
-}
-#endif
diff --git a/cuda/3d/sirt3d.cu b/cuda/3d/sirt3d.cu
index 869b2fd..e68bde8 100644
--- a/cuda/3d/sirt3d.cu
+++ b/cuda/3d/sirt3d.cu
@@ -30,10 +30,6 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
 #include "astra/cuda/3d/arith3d.h"
 #include "astra/cuda/3d/cone_fp.h"
 
-#ifdef STANDALONE
-#include "testutil.h"
-#endif
-
 #include <cstdio>
 #include <cassert>
 
@@ -375,160 +371,3 @@ bool doSIRT(cudaPitchedPtr& D_volumeData,
 
 }
 
-#ifdef STANDALONE
-
-using namespace astraCUDA3d;
-
-int main()
-{
-	SDimensions3D dims;
-	dims.iVolX = 256;
-	dims.iVolY = 256;
-	dims.iVolZ = 256;
-	dims.iProjAngles = 100;
-	dims.iProjU = 512;
-	dims.iProjV = 512;
-	dims.iRaysPerDet = 1;
-
-	SConeProjection angle[100];
-	angle[0].fSrcX = -2905.6;
-	angle[0].fSrcY = 0;
-	angle[0].fSrcZ = 0;
-
-	angle[0].fDetSX = 694.4;
-	angle[0].fDetSY = -122.4704;
-	angle[0].fDetSZ = -122.4704;
-
-	angle[0].fDetUX = 0;
-	angle[0].fDetUY = .4784;
-	//angle[0].fDetUY = .5;
-	angle[0].fDetUZ = 0;
-
-	angle[0].fDetVX = 0;
-	angle[0].fDetVY = 0;
-	angle[0].fDetVZ = .4784;
-
-#define ROTATE0(name,i,alpha) do { angle[i].f##name##X = angle[0].f##name##X * cos(alpha) - angle[0].f##name##Y * sin(alpha); angle[i].f##name##Y = angle[0].f##name##X * sin(alpha) + angle[0].f##name##Y * cos(alpha); } while(0)
-	for (int i = 1; i < 100; ++i) {
-		angle[i] = angle[0];
-		ROTATE0(Src, i, i*2*M_PI/100);
-		ROTATE0(DetS, i, i*2*M_PI/100);
-		ROTATE0(DetU, i, i*2*M_PI/100);
-		ROTATE0(DetV, i, i*2*M_PI/100);
-	}
-#undef ROTATE0
-
-
-	cudaPitchedPtr volData = allocateVolumeData(dims);
-	cudaPitchedPtr projData = allocateProjectionData(dims);
-	zeroProjectionData(projData, dims);
-
-	float* pbuf = new float[100*512*512];
-	copyProjectionsFromDevice(pbuf, projData, dims);
-	copyProjectionsToDevice(pbuf, projData, dims);
-	delete[] pbuf;
-
-#if 0
-	float* slice = new float[256*256];
-	cudaPitchedPtr ptr;
-	ptr.ptr = slice;
-	ptr.pitch = 256*sizeof(float);
-	ptr.xsize = 256*sizeof(float);
-	ptr.ysize = 256;
-
-	for (unsigned int i = 0; i < 256; ++i) {
-		for (unsigned int y = 0; y < 256; ++y)
-			for (unsigned int x = 0; x < 256; ++x)
-				slice[y*256+x] = (i-127.5)*(i-127.5)+(y-127.5)*(y-127.5)+(x-127.5)*(x-127.5) < 4900 ? 1.0f : 0.0f;
-
-		cudaExtent extentS;
-		extentS.width = dims.iVolX*sizeof(float);
-		extentS.height = dims.iVolY;
-		extentS.depth = 1;
-		cudaPos sp = { 0, 0, 0 };
-		cudaPos dp = { 0, 0, i };
-		cudaMemcpy3DParms p;
-		p.srcArray = 0;
-		p.srcPos = sp;
-		p.srcPtr = ptr;
-		p.dstArray = 0;
-		p.dstPos = dp;
-		p.dstPtr = volData;
-		p.extent = extentS;
-		p.kind = cudaMemcpyHostToDevice;
-		cudaMemcpy3D(&p);
-	}
-	astraCUDA3d::ConeFP(volData, projData, dims, angle, 1.0f);
-
-#else
-
-	for (int i = 0; i < 100; ++i) {
-		char fname[32];
-		sprintf(fname, "Tiffs/%04d.png", 4*i);
-		unsigned int w,h;
-		float* bufp = loadImage(fname, w,h);
-
-		for (int j = 0; j < 512*512; ++j) {
-			float v = bufp[j];
-			if (v > 236.0f) v = 236.0f;
-			v = logf(236.0f / v);
-			bufp[j] = 256*v;
-		}
-
-		for (int j = 0; j < 512; ++j) {
-			cudaMemcpy(((float*)projData.ptr)+100*512*j+512*i, bufp+512*j, 512*sizeof(float), cudaMemcpyHostToDevice);
-		}
-
-		delete[] bufp;
-
-	}
-#endif
-
-#if 0
-	float* bufs = new float[100*512];
-
-	for (int i = 0; i < 512; ++i) {
-		cudaMemcpy(bufs, ((float*)projData.ptr)+100*512*i, 100*512*sizeof(float), cudaMemcpyDeviceToHost);
-
-		printf("%d %d %d\n", projData.pitch, projData.xsize, projData.ysize);
-
-		char fname[20];
-		sprintf(fname, "sino%03d.png", i);
-		saveImage(fname, 100, 512, bufs);
-	}
-
-	float* bufp = new float[512*512];
-
-	for (int i = 0; i < 100; ++i) {
-		for (int j = 0; j < 512; ++j) {
-			cudaMemcpy(bufp+512*j, ((float*)projData.ptr)+100*512*j+512*i, 512*sizeof(float), cudaMemcpyDeviceToHost);
-		}
-
-		char fname[20];
-		sprintf(fname, "proj%03d.png", i);
-		saveImage(fname, 512, 512, bufp);
-	}
-#endif
-
-	zeroVolumeData(volData, dims);
-
-	cudaPitchedPtr maskData;
-	maskData.ptr = 0;
-
-	astraCUDA3d::doSIRT(volData, projData, maskData, dims, angle, 50);
-#if 1
-	float* buf = new float[256*256];
-
-	for (int i = 0; i < 256; ++i) {
-		cudaMemcpy(buf, ((float*)volData.ptr)+256*256*i, 256*256*sizeof(float), cudaMemcpyDeviceToHost);
-
-		char fname[20];
-		sprintf(fname, "vol%03d.png", i);
-		saveImage(fname, 256, 256, buf);
-	}
-#endif
-
-	return 0;
-}
-#endif
-