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| author | jakobsj <jakobsj@users.noreply.github.com> | 2019-02-14 16:31:06 +0000 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2019-02-14 16:31:06 +0000 |
| commit | aecb2e7a494e53d6ef78daf0c158be385e29f03a (patch) | |
| tree | 30a06a23e8f0f7e42548106f3b1dcb35b1266fe5 | |
| parent | 06232063fb183bdd67eb3cb153b8b62c3c511a6f (diff) | |
| parent | bc728075361f0cd978a223e8f328cb11b2b99d60 (diff) | |
| download | framework-aecb2e7a494e53d6ef78daf0c158be385e29f03a.tar.gz framework-aecb2e7a494e53d6ef78daf0c158be385e29f03a.tar.bz2 framework-aecb2e7a494e53d6ef78daf0c158be385e29f03a.tar.xz framework-aecb2e7a494e53d6ef78daf0c158be385e29f03a.zip | |
Merge pull request #186 from vais-ral/colourbay_initial_demo
Colourbay initial demo
| -rw-r--r-- | Wrappers/Python/wip/demo_imat_multichan_RGLTK.py | 6 | ||||
| -rw-r--r-- | Wrappers/Python/wip/demo_imat_whitebeam.py | 8 |
2 files changed, 7 insertions, 7 deletions
diff --git a/Wrappers/Python/wip/demo_imat_multichan_RGLTK.py b/Wrappers/Python/wip/demo_imat_multichan_RGLTK.py index 0ec116f..8370c78 100644 --- a/Wrappers/Python/wip/demo_imat_multichan_RGLTK.py +++ b/Wrappers/Python/wip/demo_imat_multichan_RGLTK.py @@ -32,8 +32,8 @@ ProjAngleChannels = np.zeros((totalAngles,totChannels,n,n),dtype='float32') ######################################################################### print ("Loading the data...") -MainPath = '/media/algol/336F96987817D4B4/DATA/IMAT_DATA/' # path to data -pathname0 = '{!s}{!s}'.format(MainPath,'PSI_DATA/DATA/Sample/') +MainPath = '/media/jakob/050d8d45-fab3-4285-935f-260e6c5f162c1/Data/neutrondata/' # path to data +pathname0 = '{!s}{!s}'.format(MainPath,'PSI_phantom_IMAT/DATA/Sample/') counterFileName = 4675 # A main loop over all available angles for ll in range(0,totalAngles,1): @@ -66,7 +66,7 @@ for ll in range(0,totalAngles,1): counterFileName += 1 ######################################################################### -flat1 = read_fits('{!s}{!s}{!s}'.format(MainPath,'PSI_DATA/DATA/','OpenBeam_aft1/IMAT00004932_Tomo_test_000_SummedImg.fits')) +flat1 = read_fits('{!s}{!s}{!s}'.format(MainPath,'PSI_phantom_IMAT/DATA/','OpenBeam_aft1/IMAT00004932_Tomo_test_000_SummedImg.fits')) nonzero = flat1 > 0 # Apply flat field and take negative log for ll in range(0,totalAngles,1): diff --git a/Wrappers/Python/wip/demo_imat_whitebeam.py b/Wrappers/Python/wip/demo_imat_whitebeam.py index 482c1ae..e0d213e 100644 --- a/Wrappers/Python/wip/demo_imat_whitebeam.py +++ b/Wrappers/Python/wip/demo_imat_whitebeam.py @@ -21,18 +21,18 @@ from ccpi.optimisation.algs import CGLS, FISTA from ccpi.optimisation.funcs import Norm2sq, Norm1 # Load and display a couple of summed projection as examples -pathname0 = '/media/algol/HD-LXU3/DATA_DANIIL/PSI_DATA/DATA/Sample/angle0/' +pathname0 = '/media/newhd/shared/Data/neutrondata/PSI_phantom_IMAT/DATA/Sample/angle0/' filename0 = 'IMAT00004675_Tomo_test_000_SummedImg.fits' data0 = read_fits(pathname0 + filename0) -pathname10 = '/media/algol/HD-LXU3/DATA_DANIIL/PSI_DATA/DATA/Sample/angle10/' +pathname10 = '/media/newhd/shared/Data/neutrondata/PSI_phantom_IMAT/DATA/Sample/angle10/' filename10 = 'IMAT00004685_Tomo_test_000_SummedImg.fits' data10 = read_fits(pathname10 + filename10) # Load a flat field (more are available, should we average over them?) -flat1 = read_fits('/media/algol/HD-LXU3/DATA_DANIIL/PSI_DATA/DATA/OpenBeam_aft1/IMAT00004932_Tomo_test_000_SummedImg.fits') +flat1 = read_fits('/media/newhd/shared/Data/neutrondata/PSI_phantom_IMAT/DATA/OpenBeam_aft1/IMAT00004932_Tomo_test_000_SummedImg.fits') # Apply flat field and display after flat-field correction and negative log data0_rel = numpy.zeros(numpy.shape(flat1), dtype = float) @@ -58,7 +58,7 @@ plt.colorbar() plt.show() # Set up for loading all summed images at 250 angles. -pathname = '/media/algol/HD-LXU3/DATA_DANIIL/PSI_DATA/DATA/Sample/angle{}/' +pathname = '/media/newhd/shared/Data/neutrondata/PSI_phantom_IMAT/DATA/Sample/angle{}/' filename = 'IMAT0000{}_Tomo_test_000_SummedImg.fits' # Dimensions |