diff options
Diffstat (limited to 'Wrappers/Python')
-rw-r--r-- | Wrappers/Python/ccpi/framework.py | 21 | ||||
-rw-r--r-- | Wrappers/Python/test/simple_demo.py | 82 |
2 files changed, 101 insertions, 2 deletions
diff --git a/Wrappers/Python/ccpi/framework.py b/Wrappers/Python/ccpi/framework.py index fc1aa21..b9dd964 100644 --- a/Wrappers/Python/ccpi/framework.py +++ b/Wrappers/Python/ccpi/framework.py @@ -310,6 +310,24 @@ class DataSet(object): # return self.callFieldMath(operation, None, self.mask, self.maskOnValue) # __abs__ + def abs(self): + out = numpy.abs(self.as_array() ) + return DataSet(out, + deep_copy=True, + dimension_labels=self.dimension_labels) + + def maximum(self,otherscalar): + out = numpy.maximum(self.as_array(),otherscalar) + return DataSet(out, + deep_copy=True, + dimension_labels=self.dimension_labels) + + def sign(self): + out = numpy.sign(self.as_array() ) + return DataSet(out, + deep_copy=True, + dimension_labels=self.dimension_labels) + # reverse operand def __radd__(self, other): return self + other @@ -344,8 +362,7 @@ class DataSet(object): # __rpow__ def sum(self): - return DataSet(self.as_array().sum(), - dimension_labels=self.dimension_labels) + return self.as_array().sum() # in-place arithmetic operators: # (+=, -=, *=, /= , //=, diff --git a/Wrappers/Python/test/simple_demo.py b/Wrappers/Python/test/simple_demo.py new file mode 100644 index 0000000..4b7e89e --- /dev/null +++ b/Wrappers/Python/test/simple_demo.py @@ -0,0 +1,82 @@ + +import sys + +sys.path.append("..") + +from ccpi.framework import * +from ccpi.reconstruction.algs import * +from ccpi.reconstruction.funcs import * +from ccpi.reconstruction.ops import * +from ccpi.reconstruction.astra_ops import * + +import numpy as np +import matplotlib.pyplot as plt + +# Set up phantom +N = 128 + +x = np.zeros((N,N)) +x[round(N/4):round(3*N/4),round(N/4):round(3*N/4)] = 1.0 +x[round(N/8):round(7*N/8),round(3*N/8):round(5*N/8)] = 2.0 + +plt.imshow(x) +plt.show() + +#vg = VolumeGeometry(grid=(N,N), domain=((-N/2,N/2),(-N/2,N/2))) + +#Phantom = VolumeData(x,geometry=vg) +Phantom = VolumeData(x) + +# Set up measurement geometry +angles_num = 20; # angles number +angles = np.linspace(0,np.pi,angles_num,endpoint=False) + +det_w = 1.0 +det_num = N + +SourceOrig = 500 +OrigDetec = 0 + +# Set up ASTRA projector +#Aop = AstraProjector(vg, angles, N,'gpu') +#Aop = AstraProjector(det_w, det_num, angles, projtype='parallel',device='gpu') + +Aop = AstraProjector(det_w, det_num, SourceOrig, + OrigDetec, angles, + N,'fanbeam','gpu') + + +# Try forward and backprojection +b = Aop.direct(Phantom) +out2 = Aop.adjoint(b) + +plt.imshow(b.array) +plt.show() + +plt.imshow(out2.array) +plt.show() + +# Create least squares object instance with projector and data. +f = Norm2sq(Aop,b,c=0.5) + +# Initial guess +x_init = VolumeData(np.zeros(x.shape)) + +# Run FISTA for least squares without regularization +x_fista0, it0, timing0, criter0 = FISTA(x_init, f, None) + +plt.imshow(x_fista0.array) +plt.show() + +# Now least squares plus 1-norm regularization +lam = 0.1 +g0 = Norm1(lam) + +# Run FISTA for least squares plus 1-norm function. +x_fista1, it1, timing1, criter1 = FISTA(x_init, f, g0) + +plt.imshow(x_fista1.array) +plt.show() + +# Delete projector +#Aop.delete() |