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#!/usr/bin/env bash
# define CIL_VERSION if not defined by calling environment
if [[ -n ${CIL_VERSION} ]]
then
echo Using defined version: $CIL_VERSION
else
export CIL_VERSION=0.10.4
echo Defining version: $CIL_VERSION
fi
# install miniconda if it is not already present
if hash conda 2>/dev/null; then
echo using preinstalled conda
else
if [ ! -f Miniconda3-latest-Linux-x86_64.sh ]; then
wget -q https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
fi
./Miniconda3-latest-Linux-x86_64.sh -u -b -p .
PATH=$PATH:./bin
fi
# presume that git clone is done before this script is launched, if not, uncomment
# git clone https://github.com/vais-ral/CCPi-Regularisation-Toolkit
conda install -y conda-build
# need to call first build
conda build Wrappers/Python/conda-recipe -c conda-forge -c ccpi
# then need to call the same with --output
export REG_FILES=`conda build Wrappers/Python/conda-recipe --output`
# REG_FILES variable should contain output files
echo files created: $REG_FILES
#upload to anaconda
if [[ -n ${CCPI_CONDA_TOKEN} ]]
then
conda install anaconda-client
while read -r outfile; do
anaconda -v -t ${CCPI_CONDA_TOKEN} upload $outfile --force --label dev
done <<< "$REG_FILES"
else
echo CCPI_CONDA_TOKEN not defined, will not upload to anaconda.
fi
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