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authorDaniil Kazantsev <dkazanc@hotmail.com>2018-05-30 10:08:01 +0100
committerDaniil Kazantsev <dkazanc@hotmail.com>2018-05-30 10:08:01 +0100
commit4992d79f8d10749f8e9c32c6dae33bfddd239fbc (patch)
treed327d19f48c8dd96a52ec4f028947e8227efb204 /Wrappers/Python/src
parent44f1bf583985a173ef8ac7a0ed4aa95dc07f2f7a (diff)
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LLT-ROF model added
Diffstat (limited to 'Wrappers/Python/src')
-rw-r--r--Wrappers/Python/src/cpu_regularisers.pyx45
-rw-r--r--Wrappers/Python/src/gpu_regularisers.pyx47
2 files changed, 92 insertions, 0 deletions
diff --git a/Wrappers/Python/src/cpu_regularisers.pyx b/Wrappers/Python/src/cpu_regularisers.pyx
index cf81bec..bf9c861 100644
--- a/Wrappers/Python/src/cpu_regularisers.pyx
+++ b/Wrappers/Python/src/cpu_regularisers.pyx
@@ -21,6 +21,7 @@ cimport numpy as np
cdef extern float TV_ROF_CPU_main(float *Input, float *Output, float lambdaPar, int iterationsNumb, float tau, int dimX, int dimY, int dimZ);
cdef extern float TV_FGP_CPU_main(float *Input, float *Output, float lambdaPar, int iterationsNumb, float epsil, int methodTV, int nonneg, int printM, int dimX, int dimY, int dimZ);
cdef extern float SB_TV_CPU_main(float *Input, float *Output, float lambdaPar, int iterationsNumb, float epsil, int methodTV, int printM, int dimX, int dimY, int dimZ);
+cdef extern float LLT_ROF_CPU_main(float *Input, float *Output, float lambdaROF, float lambdaLLT, int iterationsNumb, float tau, int dimX, int dimY, int dimZ);
cdef extern float TGV_main(float *Input, float *Output, float lambdaPar, float alpha1, float alpha0, int iterationsNumb, float L2, int dimX, int dimY);
cdef extern float Diffusion_CPU_main(float *Input, float *Output, float lambdaPar, float sigmaPar, int iterationsNumb, float tau, int penaltytype, int dimX, int dimY, int dimZ);
cdef extern float Diffus4th_CPU_main(float *Input, float *Output, float lambdaPar, float sigmaPar, int iterationsNumb, float tau, int dimX, int dimY, int dimZ);
@@ -222,7 +223,51 @@ def TGV_2D(np.ndarray[np.float32_t, ndim=2, mode="c"] inputData,
LipshitzConst,
dims[1],dims[0])
return outputData
+
+#***************************************************************#
+#******************* ROF - LLT regularisation ******************#
+#***************************************************************#
+def LLT_ROF_CPU(inputData, regularisation_parameterROF, regularisation_parameterLLT, iterations, time_marching_parameter):
+ if inputData.ndim == 2:
+ return LLT_ROF_2D(inputData, regularisation_parameterROF, regularisation_parameterLLT, iterations, time_marching_parameter)
+ elif inputData.ndim == 3:
+ return LLT_ROF_3D(inputData, regularisation_parameterROF, regularisation_parameterLLT, iterations, time_marching_parameter)
+
+def LLT_ROF_2D(np.ndarray[np.float32_t, ndim=2, mode="c"] inputData,
+ float regularisation_parameterROF,
+ float regularisation_parameterLLT,
+ int iterations,
+ float time_marching_parameter):
+
+ cdef long dims[2]
+ dims[0] = inputData.shape[0]
+ dims[1] = inputData.shape[1]
+
+ cdef np.ndarray[np.float32_t, ndim=2, mode="c"] outputData = \
+ np.zeros([dims[0],dims[1]], dtype='float32')
+
+ #/* Run ROF-LLT iterations for 2D data */
+ LLT_ROF_CPU_main(&inputData[0,0], &outputData[0,0], regularisation_parameterROF, regularisation_parameterLLT, iterations, time_marching_parameter, dims[1],dims[0],1)
+ return outputData
+
+def LLT_ROF_3D(np.ndarray[np.float32_t, ndim=3, mode="c"] inputData,
+ float regularisation_parameterROF,
+ float regularisation_parameterLLT,
+ int iterations,
+ float time_marching_parameter):
+
+ cdef long dims[3]
+ dims[0] = inputData.shape[0]
+ dims[1] = inputData.shape[1]
+ dims[2] = inputData.shape[2]
+ cdef np.ndarray[np.float32_t, ndim=3, mode="c"] outputData = \
+ np.zeros([dims[0], dims[1], dims[2]], dtype='float32')
+
+ #/* Run ROF-LLT iterations for 3D data */
+ LLT_ROF_CPU_main(&inputData[0,0,0], &outputData[0,0,0], regularisation_parameterROF, regularisation_parameterLLT, iterations, time_marching_parameter, dims[2], dims[1], dims[0])
+ return outputData
+
#****************************************************************#
#**************Directional Total-variation FGP ******************#
#****************************************************************#
diff --git a/Wrappers/Python/src/gpu_regularisers.pyx b/Wrappers/Python/src/gpu_regularisers.pyx
index 4a202d7..82d3e01 100644
--- a/Wrappers/Python/src/gpu_regularisers.pyx
+++ b/Wrappers/Python/src/gpu_regularisers.pyx
@@ -22,6 +22,7 @@ cdef extern void TV_ROF_GPU_main(float* Input, float* Output, float lambdaPar, i
cdef extern void TV_FGP_GPU_main(float *Input, float *Output, float lambdaPar, int iter, float epsil, int methodTV, int nonneg, int printM, int N, int M, int Z);
cdef extern void TV_SB_GPU_main(float *Input, float *Output, float lambdaPar, int iter, float epsil, int methodTV, int printM, int N, int M, int Z);
cdef extern void TGV_GPU_main(float *Input, float *Output, float lambdaPar, float alpha1, float alpha0, int iterationsNumb, float L2, int dimX, int dimY);
+cdef extern void LLT_ROF_GPU_main(float *Input, float *Output, float lambdaROF, float lambdaLLT, int iterationsNumb, float tau, int N, int M, int Z);
cdef extern void NonlDiff_GPU_main(float *Input, float *Output, float lambdaPar, float sigmaPar, int iterationsNumb, float tau, int penaltytype, int N, int M, int Z);
cdef extern void dTV_FGP_GPU_main(float *Input, float *InputRef, float *Output, float lambdaPar, int iterationsNumb, float epsil, float eta, int methodTV, int nonneg, int printM, int N, int M, int Z);
cdef extern void Diffus4th_GPU_main(float *Input, float *Output, float lambdaPar, float sigmaPar, int iterationsNumb, float tau, int N, int M, int Z);
@@ -87,6 +88,12 @@ def TV_SB_GPU(inputData,
tolerance_param,
methodTV,
printM)
+# LLT-ROF model
+def LLT_ROF_GPU(inputData, regularisation_parameterROF, regularisation_parameterLLT, iterations, time_marching_parameter):
+ if inputData.ndim == 2:
+ return LLT_ROF_GPU2D(inputData, regularisation_parameterROF, regularisation_parameterLLT, iterations, time_marching_parameter)
+ elif inputData.ndim == 3:
+ return LLT_ROF_GPU3D(inputData, regularisation_parameterROF, regularisation_parameterLLT, iterations, time_marching_parameter)
# Total Generilised Variation (TGV)
def TGV_GPU(inputData, regularisation_parameter, alpha1, alpha0, iterations, LipshitzConst):
if inputData.ndim == 2:
@@ -324,6 +331,46 @@ def SBTV3D(np.ndarray[np.float32_t, ndim=3, mode="c"] inputData,
return outputData
#***************************************************************#
+#************************ LLT-ROF model ************************#
+#***************************************************************#
+#************Joint LLT-ROF model for higher order **************#
+def LLT_ROF_GPU2D(np.ndarray[np.float32_t, ndim=2, mode="c"] inputData,
+ float regularisation_parameterROF,
+ float regularisation_parameterLLT,
+ int iterations,
+ float time_marching_parameter):
+
+ cdef long dims[2]
+ dims[0] = inputData.shape[0]
+ dims[1] = inputData.shape[1]
+
+ cdef np.ndarray[np.float32_t, ndim=2, mode="c"] outputData = \
+ np.zeros([dims[0],dims[1]], dtype='float32')
+
+ # Running CUDA code here
+ LLT_ROF_GPU_main(&inputData[0,0], &outputData[0,0],regularisation_parameterROF, regularisation_parameterLLT, iterations, time_marching_parameter, dims[1],dims[0],1);
+ return outputData
+
+def LLT_ROF_GPU3D(np.ndarray[np.float32_t, ndim=3, mode="c"] inputData,
+ float regularisation_parameterROF,
+ float regularisation_parameterLLT,
+ int iterations,
+ float time_marching_parameter):
+
+ cdef long dims[3]
+ dims[0] = inputData.shape[0]
+ dims[1] = inputData.shape[1]
+ dims[2] = inputData.shape[2]
+
+ cdef np.ndarray[np.float32_t, ndim=3, mode="c"] outputData = \
+ np.zeros([dims[0],dims[1],dims[2]], dtype='float32')
+
+ # Running CUDA code here
+ LLT_ROF_GPU_main(&inputData[0,0,0], &outputData[0,0,0], regularisation_parameterROF, regularisation_parameterLLT, iterations, time_marching_parameter, dims[2], dims[1], dims[0]);
+ return outputData
+
+
+#***************************************************************#
#***************** Total Generalised Variation *****************#
#***************************************************************#
def TGV2D(np.ndarray[np.float32_t, ndim=2, mode="c"] inputData,