Merge pull request #104 from vais-ral/newdirstructure

New directory structure, Merged other changes. The build script checks old and new structure.

3 files changed, 156 insertions, 0 deletions

diff --git a/test/lena_gray_512.tif b/test/lena_gray_512.tif
new file mode 100644
index 0000000..f80cafc
--- /dev/null
+++ b/test/lena_gray_512.tif
diff --git a/test/test_CPU_regularisers.py b/test/test_CPU_regularisers.py
new file mode 100644
index 0000000..379b989
--- /dev/null
+++ b/test/test_CPU_regularisers.py
@@ -0,0 +1,119 @@
+import unittest
+import math
+import os
+import timeit
+import numpy as np
+from ccpi.filters.regularisers import FGP_TV, SB_TV, TGV, LLT_ROF, FGP_dTV, NDF, Diff4th, ROF_TV
+from testroutines import *
+
+###############################################################################
+
+class TestRegularisers(unittest.TestCase):
+
+    def getPars(self):
+        filename = os.path.join("lena_gray_512.tif")
+        plt = TiffReader()
+        # read image
+        Im = plt.imread(filename)
+        Im = np.asarray(Im, dtype='float32')
+        Im = Im / 255
+        perc = 0.05
+        u0 = Im + np.random.normal(loc=0,
+                                   scale=perc * Im,
+                                   size=np.shape(Im))
+        u_ref = Im + np.random.normal(loc=0,
+                                      scale=0.01 * Im,
+                                      size=np.shape(Im))
+        u0 = u0.astype('float32')
+        u_ref = u_ref.astype('float32')
+        return Im,u0,u_ref
+
+
+    def test_FGP_TV_CPU(self):
+        Im,input,ref = self.getPars()
+
+        fgp_cpu = FGP_TV(input,0.04,1200,1e-5,0,0,0,'cpu');
+
+        rms = rmse(Im, fgp_cpu)
+
+        self.assertAlmostEqual(rms,0.02,delta=0.01)
+
+    def test_TV_ROF_CPU(self):
+        # set parameters
+        Im, input,ref = self.getPars()
+        # call routine
+        fgp_cpu = ROF_TV(input,0.04,1200,2e-5, 'cpu')
+
+        rms = rmse(Im, fgp_cpu)
+
+        # now test that it generates some expected output
+        self.assertAlmostEqual(rms,0.02,delta=0.01)
+
+    def test_SB_TV_CPU(self):
+        # set parameters
+        Im, input,ref = self.getPars()
+        # call routine
+        sb_cpu = SB_TV(input,0.04,150,1e-5,0,0,'cpu')
+
+        rms = rmse(Im, sb_cpu)
+
+        # now test that it generates some expected output
+        self.assertAlmostEqual(rms,0.02,delta=0.01)
+
+    def test_TGV_CPU(self):
+        # set parameters
+        Im, input,ref = self.getPars()
+        # call routine
+        sb_cpu = TGV(input,0.04,1.0,2.0,250,12,'cpu')
+
+        rms = rmse(Im, sb_cpu)
+
+        # now test that it generates some expected output
+        self.assertAlmostEqual(rms,0.02,delta=0.01)
+
+    def test_LLT_ROF_CPU(self):
+        # set parameters
+        Im, input,ref = self.getPars()
+        # call routine
+        sb_cpu = LLT_ROF(input,0.04,0.01,1000,1e-4,'cpu')
+
+        rms = rmse(Im, sb_cpu)
+
+        # now test that it generates some expected output
+        self.assertAlmostEqual(rms,0.02,delta=0.01)
+
+    def test_NDF_CPU(self):
+        # set parameters
+        Im, input,ref = self.getPars()
+        # call routine
+        sb_cpu = NDF(input, 0.06, 0.04,1000,0.025,1, 'cpu')
+
+        rms = rmse(Im, sb_cpu)
+
+        # now test that it generates some expected output
+        self.assertAlmostEqual(rms, 0.02, delta=0.01)
+
+    def test_Diff4th_CPU(self):
+        # set parameters
+        Im, input,ref = self.getPars()
+        # call routine
+        sb_cpu = Diff4th(input, 3.5,0.02,500,0.001, 'cpu')
+
+        rms = rmse(Im, sb_cpu)
+
+        # now test that it generates some expected output
+        self.assertAlmostEqual(rms, 0.02, delta=0.01)
+
+    def test_FGP_dTV_CPU(self):
+        # set parameters
+        Im, input,ref = self.getPars()
+        # call routine
+        sb_cpu = FGP_dTV(input,ref,0.04,1000,1e-7,0.2,0,0,0, 'cpu')
+
+        rms = rmse(Im, sb_cpu)
+
+        # now test that it generates some expected output
+        self.assertAlmostEqual(rms, 0.02, delta=0.01)
+
+if __name__ == '__main__':
+    unittest.main()
diff --git a/test/testroutines.py b/test/testroutines.py
new file mode 100644
index 0000000..8da5c5e
--- /dev/null
+++ b/test/testroutines.py
@@ -0,0 +1,37 @@
+import numpy as np
+from PIL import Image
+
+class TiffReader(object):
+    def imread(self, filename):
+        return np.asarray(Image.open(filename))
+
+
+###############################################################################
+def printParametersToString(pars):
+    txt = r''
+    for key, value in pars.items():
+        if key == 'algorithm':
+            txt += "{0} = {1}".format(key, value.__name__)
+        elif key == 'input':
+            txt += "{0} = {1}".format(key, np.shape(value))
+        elif key == 'refdata':
+            txt += "{0} = {1}".format(key, np.shape(value))
+        else:
+            txt += "{0} = {1}".format(key, value)
+        txt += '\n'
+    return txt
+
+
+def nrmse(im1, im2):
+    rmse = np.sqrt(np.sum((im2 - im1) ** 2) / float(im1.size))
+    max_val = max(np.max(im1), np.max(im2))
+    min_val = min(np.min(im1), np.min(im2))
+    return 1 - (rmse / (max_val - min_val))
+
+
+def rmse(im1, im2):
+    rmse = np.sqrt(np.sum((im1 - im2) ** 2) / float(im1.size))
+    return rmse
+
+
+###############################################################################