diff options
Diffstat (limited to 'src')
-rw-r--r-- | src/Python/CMakeLists.txt | 16 | ||||
-rw-r--r-- | src/Python/fista-recipe/build.sh | 10 | ||||
-rw-r--r-- | src/Python/fista-recipe/meta.yaml | 28 | ||||
-rw-r--r-- | src/Python/setup-fista.py.in | 27 | ||||
-rw-r--r-- | src/Python/setup.py.in | 4 |
5 files changed, 83 insertions, 2 deletions
diff --git a/src/Python/CMakeLists.txt b/src/Python/CMakeLists.txt index fd74ee7..33ebc08 100644 --- a/src/Python/CMakeLists.txt +++ b/src/Python/CMakeLists.txt @@ -63,12 +63,19 @@ message("Python found Minor " ${PYTHON_VERSION_MINOR}) findPythonPackagesPath() message("PYTHON_PACKAGES_FOUND " ${PYTHON_PACKAGES_PATH}) -# copy the Pyhon files of the package +######### CONFIGURE REGULARIZER ############# + +# copy the Pyhon files of the package regularizer file(MAKE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/ccpi/imaging/) file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/ccpi/__init__.py DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/ccpi) +# regularizers file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/ccpi/imaging/__init__.py DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/ccpi/imaging) file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/ccpi/imaging/Regularizer.py DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/ccpi/imaging) +# fista reconstructor +file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/ccpi/reconstruction/FISTAReconstructor.py DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/ccpi/reconstruction) +#file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/ccpi/reconstruction/__init__.py DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/ccpi/reconstruction) + if (WIN32) #set (CONDA_ENVIRONMENT_PATH "C:\\Apps\\Miniconda2\\envs\\${CONDA_ENVIRONMENT}" CACHE PATH "Main environment directory") set (CONDA_ENVIRONMENT_PREFIX "${CONDA_ENVIRONMENT_PATH}\\Library" CACHE PATH "env dir") @@ -84,9 +91,16 @@ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/setup.py.in ${CMAKE_CURRENT_BINARY_DI file(MAKE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/conda-recipe) file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/conda-recipe/meta.yaml DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/conda-recipe) +configure_file(${CMAKE_CURRENT_SOURCE_DIR}/setup-fista.py.in ${CMAKE_CURRENT_BINARY_DIR}/setup-fista.py) +file(MAKE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/fista-recipe) +file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/fista-recipe/meta.yaml DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/fista-recipe) + if (WIN32) file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/conda-recipe/bld.bat DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/conda-recipe/) configure_file(${CMAKE_CURRENT_SOURCE_DIR}/compile.bat.in ${CMAKE_CURRENT_BINARY_DIR}/compile.bat) + + file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/fista-recipe/bld.bat DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/fista-recipe/) + configure_file(${CMAKE_CURRENT_SOURCE_DIR}/compile.bat.in ${CMAKE_CURRENT_BINARY_DIR}/compile.bat) elseif(UNIX) message ("We are on UNIX") file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/conda-recipe/build.sh DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/conda-recipe/) diff --git a/src/Python/fista-recipe/build.sh b/src/Python/fista-recipe/build.sh new file mode 100644 index 0000000..e3f3552 --- /dev/null +++ b/src/Python/fista-recipe/build.sh @@ -0,0 +1,10 @@ +if [ -z "$CIL_VERSION" ]; then + echo "Need to set CIL_VERSION" + exit 1 +fi +mkdir "$SRC_DIR/ccpifista" +cp -r "$RECIPE_DIR/.." "$SRC_DIR/ccpifista" + +cd $SRC_DIR/ccpifista + +$PYTHON setup-fista.py install diff --git a/src/Python/fista-recipe/meta.yaml b/src/Python/fista-recipe/meta.yaml new file mode 100644 index 0000000..64c9b5d --- /dev/null +++ b/src/Python/fista-recipe/meta.yaml @@ -0,0 +1,28 @@ +package: + name: ccpi-fista + version: {{ environ['CIL_VERSION'] }} + + +build: + preserve_egg_dir: False + script_env: + - CIL_VERSION +# number: 0 + +requirements: + build: + - python + - numpy + - setuptools + + run: + - python + - numpy + - astra + + + +about: + home: http://www.ccpi.ac.uk + license: Apache v.2.0 license + summary: 'CCPi Core Imaging Library (Viewer)' diff --git a/src/Python/setup-fista.py.in b/src/Python/setup-fista.py.in new file mode 100644 index 0000000..c5c9f4d --- /dev/null +++ b/src/Python/setup-fista.py.in @@ -0,0 +1,27 @@ +from distutils.core import setup +#from setuptools import setup, find_packages +import os + +cil_version=os.environ['CIL_VERSION'] +if cil_version == '': + print("Please set the environmental variable CIL_VERSION") + sys.exit(1) + +setup( + name="ccpi-fista", + version=cil_version, + packages=['ccpi','ccpi.reconstruction'], + install_requires=['numpy'], + + zip_safe = False, + + # metadata for upload to PyPI + author="Edoardo Pasca", + author_email="edo.paskino@gmail.com", + description='CCPi Core Imaging Library - FISTA Reconstructor module', + license="Apache v2.0", + keywords="tomography interative reconstruction", + url="http://www.ccpi.ac.uk", # project home page, if any + + # could also include long_description, download_url, classifiers, etc. +) diff --git a/src/Python/setup.py.in b/src/Python/setup.py.in index 0a1f4ad..12e8af1 100644 --- a/src/Python/setup.py.in +++ b/src/Python/setup.py.in @@ -44,7 +44,7 @@ else: setup( name='ccpi', - description='CCPi Core Imaging Library - FISTA Reconstruction Module', + description='CCPi Core Imaging Library - Image Regularizers', version=cil_version, cmdclass = {'build_ext': build_ext}, ext_modules = [Extension("ccpi.imaging.cpu_regularizers", @@ -65,3 +65,5 @@ setup( zip_safe = False, packages = {'ccpi','ccpi.imaging'}, ) + + |