From cc3a464ec587e95ddfd421cd3836a7677dfb9744 Mon Sep 17 00:00:00 2001 From: Edoardo Pasca Date: Wed, 23 Aug 2017 16:51:18 +0100 Subject: export/import data from hdf5 Added file to export the data from DemoRD2.m to HDF5 to pass it to Python. Added file to import the data from DemoRD2.m from HDF5. --- src/Python/test/readhd5.py | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 src/Python/test/readhd5.py (limited to 'src') diff --git a/src/Python/test/readhd5.py b/src/Python/test/readhd5.py new file mode 100644 index 0000000..1e19e14 --- /dev/null +++ b/src/Python/test/readhd5.py @@ -0,0 +1,28 @@ +# -*- coding: utf-8 -*- +""" +Created on Wed Aug 23 16:34:49 2017 + +@author: ofn77899 +""" + +import h5py +import numpy + +def getEntry(nx, location): + for item in nx[location].keys(): + print (item) + +filename = r'C:\Users\ofn77899\Documents\GitHub\CCPi-FISTA_reconstruction\Demos\DendrData.h5' +nx = h5py.File(filename, "r") +#getEntry(nx, '/') +# I have exported the entries as children of / +entries = [entry for entry in nx['/'].keys()] +print (entries) + +Sino3D = numpy.asarray(nx.get('/Sino3D')) +Weights3D = numpy.asarray(nx.get('/Weights3D')) +angSize = numpy.asarray(nx.get('/angSize'), dtype=int)[0] +angles_rad = numpy.asarray(nx.get('/angles_rad')) +recon_size = numpy.asarray(nx.get('/recon_size'), dtype=int)[0] +size_det = numpy.asarray(nx.get('/size_det'), dtype=int)[0] +slices_tot = numpy.asarray(nx.get('/slices_tot'), dtype=int)[0] \ No newline at end of file -- cgit v1.2.3