1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
|
# CCPi-Regularisation Toolkit (CCPi-RGL)
**Iterative image reconstruction (IIR) methods normally require regularisation to stabilise the convergence and make the reconstruction problem more well-posed.
CCPi-RGL software consist of 2D/3D regularisation modules for single-channel and multi-channel reconstruction problems. The modules especially suited for IIR, however,
can also be used as image denoising iterative filters. The core modules are written in C-OMP and CUDA languages and wrappers for Matlab and Python are provided.**
## Prerequisites:
* MATLAB (www.mathworks.com/products/matlab/) OR
* Python (tested ver. 3.5); Cython
* C compilers
* nvcc (CUDA SDK) compilers
## Package modules (regularisers):
### Single-channel
1. Rudin-Osher-Fatemi (ROF) Total Variation (explicit PDE minimisation scheme) [2D/3D GPU/CPU]; (Ref. 1)
2. Fast-Gradient-Projection (FGP) Total Variation [2D/3D GPU/CPU]; (Ref. 2)
### Multi-channel
## Installation:
### Python (conda-build)
```
export CIL_VERSION=0.9.2
conda build recipes/regularisers --numpy 1.12 --python 3.5
conda install cil_regulariser=0.9.2 --use-local --force
cd Wrappers/Python
conda build conda-recipe --numpy 1.12 --python 3.5
conda install ccpi-regulariser=0.9.2 --use-local --force
cd demos/
python demo_cpu_regularisers.py.py # to run CPU demo
```
### Matlab
```
cd /Wrappers/Matlab/mex_compile
compileCPU_mex.m % to compile CPU modules
compileGPU_mex.m % to compile GPU modules (see instructions in the file)
```
### References:
1. Rudin, L.I., Osher, S. and Fatemi, E., 1992. Nonlinear total variation based noise removal algorithms. Physica D: nonlinear phenomena, 60(1-4), pp.259-268.
2. Beck, A. and Teboulle, M., 2009. Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems. IEEE Transactions on Image Processing, 18(11), pp.2419-2434.
3. Lysaker, M., Lundervold, A. and Tai, X.C., 2003. Noise removal using fourth-order partial differential equation with applications to medical magnetic resonance images in space and time. IEEE Transactions on image processing, 12(12), pp.1579-1590.
### License:
[Apache License, Version 2.0](http://www.apache.org/licenses/LICENSE-2.0)
### Acknowledgments:
CCPi-RGL software is a product of the [CCPi](https://www.ccpi.ac.uk/) group and STFC SCD software developers. Any relevant questions/comments can be e-mailed to Daniil Kazantsev at dkazanc@hotmail.com
|
