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Diffstat (limited to 'sci-biology/imagej/imagej-1.51k-r1.ebuild')
| -rw-r--r-- | sci-biology/imagej/imagej-1.51k-r1.ebuild | 132 |
1 files changed, 132 insertions, 0 deletions
diff --git a/sci-biology/imagej/imagej-1.51k-r1.ebuild b/sci-biology/imagej/imagej-1.51k-r1.ebuild new file mode 100644 index 0000000..931aef0 --- /dev/null +++ b/sci-biology/imagej/imagej-1.51k-r1.ebuild @@ -0,0 +1,132 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit java-pkg-2 java-ant-2 eutils versionator + +MY_PN="ij" +MY_PV=$(delete_all_version_separators) + +# NOTE: +# as plugins are regularly lagging behind, we use the pack released for previous +# version instead. Change to present version locally if you are sure proper +# version has been released. +# see https://bugs.gentoo.org/show_bug.cgi?id=112275 +# https://github.com/imagej/imagej1/issues/28 +IJ_PV=$((${MY_PV::3}-1)) + +DESCRIPTION="Image Processing and Analysis in Java" +HOMEPAGE="http://rsb.info.nih.gov/ij/" + +SRC_URI="http://imagej.nih.gov/ij/download/src/${MY_PN}${MY_PV}-src.zip + http://rsb.info.nih.gov/ij/images/ImageJ.png + plugins? ( http://wsr.imagej.net/distros/cross-platform/${MY_PN}${IJ_PV}.zip )" +# plugins are under a different licenses and can be installed into user's $IJ_HOME/plugins +# plugins? ( http://rsb.info.nih.gov/ij/download/zips/${MY_PN}${IJ_PV}.zip )" + +RESTRICT="" +LICENSE="public-domain" # http://imagej.net/disclaimer.html +SLOT="0" + +KEYWORDS="" + +IUSE="doc plugins debug" + +RDEPEND=">=virtual/jre-1.6:* + dev-java/java-config + dev-java/jython" +DEPEND=">=virtual/jdk-1.6:* + dev-java/ant-core + ${RDEPEND}" + +S=${WORKDIR}/source +IJ_S=${WORKDIR}/ImageJ + +src_prepare() { + cp "${DISTDIR}"/ImageJ.png "${WORKDIR}/${PN}.png" || die + + if ! use debug ; then + sed -i 's: debug="on">: debug="off">:' "${S}"/build.xml || die + fi + epatch "${FILESDIR}"/AutoThresholder.java.patch + eapply_user +} + +# in src_compile we get: !!! ERROR: Package jython was not found! +# TODO: overwrite calls to jython ? See +# ij/plugin/frame/Editor.java +# plugin/PlugInInterpreter.java +# plugin/Macro_Runner.java + +src_compile() { + local antflags="build" + use doc && antflags="${antflags} javadocs" + + ant ${antflags} || die "ant build failed" + + # Max memory usage depends on available memory and CPU type + MEM=$(grep MemTotal /proc/meminfo | cut -d':' -f2 | grep -o [0-9]*) + IJ_MAX_MEM=$(expr ${MEM} / 1024) + if use x86 && $IJ_MAX_MEM -gt 2048 ; then + IJ_MAX_MEM=2048 + fi + # build finished, generate startup wrapper + cat <<EOF > "${T}/${PN}" +#!${EPREFIX}/bin/bash +IJ_LIB=${EPREFIX}/usr/share/${PN}/lib +if !([ "\${IJ_HOME}" ]) ; then + IJ_HOME=\${HOME}/.imagej +fi +if [ -d \${IJ_HOME}/plugins ] ; then + IJ_PLG=\${IJ_HOME} +else + IJ_PLG=${EPREFIX}/usr/share/${PN}/lib +fi +if !([ "\$IJ_MEM" ]) ; then + IJ_MEM=${IJ_MAX_MEM} +fi +if !([ "\$IJ_CP" ]) ; then + IJ_CP=\$(java-config -p imagej):\$(java-config -O)/lib/tools.jar +else + IJ_CP=\$(java-config -p imagej):\$(java-config -O)/lib/tools.jar:\${IJ_CP} +fi +\$(java-config --java) \\ + -Xmx\${IJ_MEM}m -Dswing.aatext=true \\ + -Dawt.useSystemAAFontSettings=on\\ + -cp \${IJ_CP} \\ + -Duser.home=\${IJ_HOME} \\ + -Dplugins.dir=\${IJ_PLG} \\ + ij.ImageJ "\$@" +EOF +} + +src_install() { + java-pkg_dojar *.jar + dobin "${T}/${PN}" + + if use plugins ; then + cp -R "${IJ_S}"/plugins "${ED}"/usr/share/"${PN}"/lib/ + cp -R "${IJ_S}"/macros "${ED}"/usr/share/"${PN}"/lib/ + fi + + use doc && java-pkg_dohtml -r "${WORKDIR}"/api + + insinto /usr/share/pixmaps + doins "${WORKDIR}/${PN}".png + make_desktop_entry "${PN}" ImageJ "${PN}".png Graphics +} + +pkg_postinst() { + einfo "" + einfo "You can configure the path of a folder, which contains \"plugins\" directory and IJ_Prefs.txt," + einfo "by setting the environmental variable, \$IJ_HOME." + einfo "Default setting is \$IJ_HOME=\${HOME}/.imagej, i.e. \${HOME}/.imagej/plugins and \${HOME}/.imagej/IJ_Prefs.txt." + einfo "" + einfo "You can also configure the memory size by setting the environmental variable, \$IJ_MEM," + einfo "and the class path by setting the environmental variable, \$IJ_CP." + einfo "" + einfo "If you want to use much more plugins, please see http://rsb.info.nih.gov/ij/plugins/index.html" + einfo "and add *.class files to \$IJ_HOME/plugins folder" + einfo "" +} |