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| author | Suren A. Chilingaryan <csa@suren.me> | 2018-12-13 00:05:49 +0100 |
|---|---|---|
| committer | Suren A. Chilingaryan <csa@suren.me> | 2018-12-13 00:05:49 +0100 |
| commit | 9c3d5c48694db1018d50aa85acad434f47e5ed0b (patch) | |
| tree | bee24b887c12d1abaa4d942525a6c1d304dd200d /biomedisa/Dockerfile | |
| download | biomedisa-9c3d5c48694db1018d50aa85acad434f47e5ed0b.tar.gz biomedisa-9c3d5c48694db1018d50aa85acad434f47e5ed0b.tar.bz2 biomedisa-9c3d5c48694db1018d50aa85acad434f47e5ed0b.tar.xz biomedisa-9c3d5c48694db1018d50aa85acad434f47e5ed0b.zip | |
Initial import
Diffstat (limited to 'biomedisa/Dockerfile')
| -rw-r--r-- | biomedisa/Dockerfile | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/biomedisa/Dockerfile b/biomedisa/Dockerfile new file mode 100644 index 0000000..6666be7 --- /dev/null +++ b/biomedisa/Dockerfile @@ -0,0 +1,49 @@ +#FROM nvidia/cuda:10.0-cudnn7-devel-ubuntu18.04 +FROM nvidia/cuda:9.0-cudnn7-devel-ubuntu16.04 +MAINTAINER Suren A. Chilingaryan <csa@suren.me> + +# Install Devel & Python +RUN apt-get update -qq \ + && apt-get install --no-install-recommends -y \ + git pkg-config netcat supervisor \ + telnet iputils-ping dnsutils \ + python python-dev python-pip python-setuptools python-virtualenv python-wheel python-numpy python-scipy python-h5py python-yaml python-pydot python-matplotlib libopenblas-base + +# Install Keras + Tensor Flow +ARG TENSORFLOW_VERSION=1.12.0 +ARG TENSORFLOW_DEVICE=gpu +ARG TENSORFLOW_APPEND=_gpu + +ARG KERAS_VERSION=2.2.4 +ENV KERAS_BACKEND=tensorflow + +RUN pip --no-cache-dir install \ + https://storage.googleapis.com/tensorflow/linux/${TENSORFLOW_DEVICE}/tensorflow${TENSORFLOW_APPEND}-${TENSORFLOW_VERSION}-cp27-none-linux_x86_64.whl + +RUN pip --no-cache-dir install --no-dependencies \ + git+https://github.com/fchollet/keras.git@${KERAS_VERSION} + +ADD tests/ /root/tests + +# install dependencies from debian packages +RUN apt-get install --no-install-recommends -y \ + mc \ + libsm6 libxrender-dev \ + openmpi-bin openmpi-doc libopenmpi-dev \ + python-gdcm python-mysqldb + +# upgrade pip +RUN pip --no-cache-dir install --upgrade pip + +# install dependencies from python packages +RUN pip --no-cache-dir install \ + setuptools==39.1.0 numpy==1.14.5 tifffile==0.14.0 SimpleParse==2.1.1 redis==2.10.6 rq==0.12 \ + scipy weave scikit-image opencv-python h5py pydicom Pillow django mpi4py pycuda + +COPY supervisor/*.conf /etc/ +COPY *-entrypoint.sh / +COPY run-*.sh / +ENTRYPOINT ["/docker-entrypoint.sh"] + +ENV BIOMEDISA_DEVICE=${TENSORFLOW_DEVICE} +CMD /usr/bin/supervisord -c /etc/supervisord-${BIOMEDISA_DEVICE}.conf |