Initial import

5 files changed, 68 insertions, 0 deletions

diff --git a/django/Dockerfile b/django/Dockerfile
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+++ b/django/Dockerfile
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+FROM ubuntu:16.04
+MAINTAINER Suren A. Chilingaryan <csa@suren.me>
+
+# Install Devel & Python
+RUN apt-get update -qq \
+ && apt-get install --no-install-recommends -y \
+    gcc git pkg-config netcat \
+    telnet iputils-ping dnsutils \
+    python python-dev python-pip python-setuptools python-virtualenv python-wheel python-numpy python-scipy python-h5py python-yaml python-pydot python-matplotlib libopenblas-base \
+    mysql-client libmysqlclient-dev
+
+# upgrade pip
+RUN pip --no-cache-dir install --upgrade pip
+
+# install dependencies from python packages
+RUN pip --no-cache-dir install \
+    setuptools==39.1.0 numpy==1.14.5 tifffile==0.14.0 SimpleParse==2.1.1 redis==2.10.6 rq==0.12 \
+    scipy weave scikit-image opencv-python h5py pydicom Pillow django MySQL
+
+COPY *-entrypoint.sh /
+COPY run*.sh /
+ENTRYPOINT ["/docker-entrypoint.sh"]
+CMD ["/run.sh"]
diff --git a/django/Makefile b/django/Makefile
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+all: build
+#install: push
+
+.PHONY: rebuild build push start stop restart bash
+
+build: Dockerfile
+	docker build --tag chsa/biomedisa-django:latest .
+
+rebuild: Dockerfile
+	docker build --no-cache --tag chsa/biomedisa-django:latest .
+
+#push: build
+#	docker push chsa/biomedisa:latest
+
+bash: build
+	docker run -it chsa/biomedisa-django /bin/bash
diff --git a/django/docker-entrypoint.sh b/django/docker-entrypoint.sh
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+#! /bin/bash
+
+set -e
+
+export PYTHONPATH=/biomedisa:${PYTHONPATH}
+export DJANGO_SETTINGS_MODULE=biomedisa.settings
+
+if ! whoami &> /dev/null; then
+  if [ -w /etc/passwd ]; then
+      echo "${USER_NAME:-default}:x:$(id -u):0:${USER_NAME:-default} user:${HOME}:/sbin/nologin" >> /etc/passwd
+  fi
+fi
+
+until nc -z -v -w30 $MYSQL_HOST 3306; do
+  echo "Waiting for database connection..."
+  sleep 1
+done
+
+cd /biomedisa
+echo "Running: $@"
+exec "$@"
diff --git a/django/run-bootstrap.sh b/django/run-bootstrap.sh
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+++ b/django/run-bootstrap.sh
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+#! /bin/bash
+
+python manage.py makemigrations
+python manage.py migrate
+python manage.py createsuperuser
diff --git a/django/run.sh b/django/run.sh
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+++ b/django/run.sh
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+#! /bin/bash
+
+python manage.py runserver 0.0.0.0:8000